Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_14020

Experiment: Cobalt chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_14015 and AO353_14020 are separated by 259 nucleotidesAO353_14020 and AO353_14025 are separated by 280 nucleotides AO353_14015: AO353_14015 - C4-dicarboxylate ABC transporter, at 3,111,778 to 3,113,091 _14015 AO353_14020: AO353_14020 - serine hydroxymethyltransferase, at 3,113,351 to 3,114,604 _14020 AO353_14025: AO353_14025 - diguanylate phosphodiesterase, at 3,114,885 to 3,118,733 _14025 Position (kb) 3113 3114 3115Strain fitness (log2 ratio) -1 0 1 2at 3112.409 kb on + strand, within AO353_14015at 3112.409 kb on + strand, within AO353_14015at 3112.410 kb on - strand, within AO353_14015at 3112.410 kb on - strand, within AO353_14015at 3112.410 kb on - strand, within AO353_14015at 3112.410 kb on - strand, within AO353_14015at 3112.410 kb on - strand, within AO353_14015at 3112.410 kb on - strand, within AO353_14015at 3112.457 kb on + strand, within AO353_14015at 3112.458 kb on - strand, within AO353_14015at 3112.458 kb on - strand, within AO353_14015at 3112.458 kb on - strand, within AO353_14015at 3112.458 kb on - strand, within AO353_14015at 3112.458 kb on - strand, within AO353_14015at 3112.853 kb on + strand, within AO353_14015at 3112.853 kb on + strand, within AO353_14015at 3112.853 kb on + strand, within AO353_14015at 3112.853 kb on + strand, within AO353_14015at 3112.853 kb on + strand, within AO353_14015at 3112.853 kb on + strand, within AO353_14015at 3112.853 kb on + strand, within AO353_14015at 3112.854 kb on - strand, within AO353_14015at 3112.854 kb on - strand, within AO353_14015at 3112.854 kb on - strand, within AO353_14015at 3112.854 kb on - strand, within AO353_14015at 3112.854 kb on - strand, within AO353_14015at 3112.911 kb on + strand, within AO353_14015at 3112.911 kb on + strand, within AO353_14015at 3112.911 kb on + strand, within AO353_14015at 3112.991 kb on - strandat 3112.991 kb on - strandat 3112.991 kb on - strandat 3112.991 kb on - strandat 3112.991 kb on - strandat 3112.991 kb on - strandat 3112.991 kb on - strandat 3112.991 kb on - strandat 3113.004 kb on - strandat 3113.151 kb on + strandat 3113.151 kb on + strandat 3113.151 kb on + strandat 3113.151 kb on + strandat 3113.151 kb on + strandat 3113.151 kb on + strandat 3113.151 kb on + strandat 3113.151 kb on + strandat 3113.151 kb on + strandat 3113.151 kb on + strandat 3113.152 kb on - strandat 3113.152 kb on - strandat 3113.152 kb on - strandat 3113.152 kb on - strandat 3113.194 kb on + strandat 3113.195 kb on - strandat 3113.352 kb on + strandat 3114.492 kb on + strandat 3114.648 kb on - strandat 3114.648 kb on - strandat 3114.671 kb on + strandat 3114.671 kb on + strandat 3114.671 kb on + strandat 3114.671 kb on + strandat 3114.672 kb on - strandat 3114.672 kb on - strandat 3114.672 kb on - strandat 3114.672 kb on - strandat 3114.729 kb on - strandat 3114.962 kb on - strandat 3115.165 kb on + strandat 3115.165 kb on + strandat 3115.165 kb on + strandat 3115.165 kb on + strandat 3115.166 kb on - strandat 3115.166 kb on - strandat 3115.166 kb on - strandat 3115.166 kb on - strandat 3115.166 kb on - strandat 3115.166 kb on - strandat 3115.166 kb on - strandat 3115.166 kb on - strandat 3115.166 kb on - strandat 3115.166 kb on - strandat 3115.181 kb on - strandat 3115.274 kb on + strand, within AO353_14025at 3115.274 kb on + strand, within AO353_14025at 3115.581 kb on - strand, within AO353_14025

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.32 mM
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3,112,409 + AO353_14015 0.48 +0.8
3,112,409 + AO353_14015 0.48 +0.7
3,112,410 - AO353_14015 0.48 -0.4
3,112,410 - AO353_14015 0.48 +0.8
3,112,410 - AO353_14015 0.48 +0.2
3,112,410 - AO353_14015 0.48 -0.8
3,112,410 - AO353_14015 0.48 +0.3
3,112,410 - AO353_14015 0.48 +0.7
3,112,457 + AO353_14015 0.52 +0.3
3,112,458 - AO353_14015 0.52 -0.4
3,112,458 - AO353_14015 0.52 -1.0
3,112,458 - AO353_14015 0.52 +1.2
3,112,458 - AO353_14015 0.52 +0.1
3,112,458 - AO353_14015 0.52 -0.8
3,112,853 + AO353_14015 0.82 +1.4
3,112,853 + AO353_14015 0.82 -1.1
3,112,853 + AO353_14015 0.82 +0.4
3,112,853 + AO353_14015 0.82 -0.2
3,112,853 + AO353_14015 0.82 +1.4
3,112,853 + AO353_14015 0.82 +1.6
3,112,853 + AO353_14015 0.82 +0.4
3,112,854 - AO353_14015 0.82 -0.4
3,112,854 - AO353_14015 0.82 -0.6
3,112,854 - AO353_14015 0.82 +1.8
3,112,854 - AO353_14015 0.82 -1.4
3,112,854 - AO353_14015 0.82 -0.3
3,112,911 + AO353_14015 0.86 +0.2
3,112,911 + AO353_14015 0.86 -1.4
3,112,911 + AO353_14015 0.86 -1.1
3,112,991 - -1.7
3,112,991 - +0.6
3,112,991 - +0.4
3,112,991 - -0.9
3,112,991 - -0.6
3,112,991 - -1.2
3,112,991 - +1.1
3,112,991 - -1.3
3,113,004 - -0.3
3,113,151 + +0.6
3,113,151 + +0.6
3,113,151 + +0.8
3,113,151 + +0.6
3,113,151 + +0.8
3,113,151 + -1.3
3,113,151 + +1.3
3,113,151 + -1.2
3,113,151 + +1.7
3,113,151 + -0.8
3,113,152 - -0.1
3,113,152 - -0.5
3,113,152 - +1.0
3,113,152 - -0.3
3,113,194 + +1.1
3,113,195 - +1.1
3,113,352 + -1.7
3,114,492 + -0.3
3,114,648 - +0.7
3,114,648 - -0.8
3,114,671 + -1.7
3,114,671 + +1.1
3,114,671 + -1.0
3,114,671 + +1.0
3,114,672 - +0.8
3,114,672 - +0.1
3,114,672 - +0.3
3,114,672 - -1.2
3,114,729 - +1.0
3,114,962 - +0.5
3,115,165 + -0.8
3,115,165 + -1.0
3,115,165 + -0.9
3,115,165 + -1.1
3,115,166 - -1.5
3,115,166 - +0.5
3,115,166 - -0.5
3,115,166 - -0.9
3,115,166 - -1.2
3,115,166 - +0.2
3,115,166 - +0.6
3,115,166 - +1.1
3,115,166 - -0.0
3,115,166 - -0.7
3,115,181 - +0.4
3,115,274 + AO353_14025 0.10 -0.4
3,115,274 + AO353_14025 0.10 -0.5
3,115,581 - AO353_14025 0.18 -1.1

Or see this region's nucleotide sequence