Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_13905

Experiment: Cobalt chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_13900 and AO353_13905 are separated by 55 nucleotidesAO353_13905 and AO353_13910 overlap by 4 nucleotides AO353_13900: AO353_13900 - kinase, at 3,089,009 to 3,089,902 _13900 AO353_13905: AO353_13905 - tRNA (uracil-5-)-methyltransferase, at 3,089,958 to 3,091,037 _13905 AO353_13910: AO353_13910 - guanine permease, at 3,091,034 to 3,092,329 _13910 Position (kb) 3089 3090 3091 3092Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3088.983 kb on + strandat 3088.984 kb on - strandat 3088.984 kb on - strandat 3088.984 kb on - strandat 3088.986 kb on + strandat 3088.986 kb on + strandat 3088.987 kb on - strandat 3088.987 kb on - strandat 3088.987 kb on - strandat 3088.987 kb on - strandat 3088.987 kb on - strandat 3089.000 kb on + strandat 3089.000 kb on + strandat 3089.000 kb on + strandat 3089.000 kb on + strandat 3089.000 kb on + strandat 3089.000 kb on + strandat 3089.000 kb on + strandat 3089.001 kb on - strandat 3089.001 kb on - strandat 3089.001 kb on - strandat 3089.001 kb on - strandat 3089.001 kb on - strandat 3089.001 kb on - strandat 3089.001 kb on - strandat 3089.086 kb on + strandat 3089.102 kb on + strand, within AO353_13900at 3089.102 kb on + strand, within AO353_13900at 3089.102 kb on + strand, within AO353_13900at 3089.102 kb on + strand, within AO353_13900at 3089.103 kb on - strand, within AO353_13900at 3089.103 kb on - strand, within AO353_13900at 3089.103 kb on - strand, within AO353_13900at 3089.103 kb on - strand, within AO353_13900at 3089.103 kb on - strand, within AO353_13900at 3089.127 kb on + strand, within AO353_13900at 3089.127 kb on + strand, within AO353_13900at 3089.127 kb on + strand, within AO353_13900at 3089.127 kb on + strand, within AO353_13900at 3089.127 kb on + strand, within AO353_13900at 3089.127 kb on + strand, within AO353_13900at 3089.128 kb on - strand, within AO353_13900at 3089.128 kb on - strand, within AO353_13900at 3089.144 kb on + strand, within AO353_13900at 3089.144 kb on + strand, within AO353_13900at 3089.144 kb on + strand, within AO353_13900at 3089.144 kb on + strand, within AO353_13900at 3089.144 kb on + strand, within AO353_13900at 3089.144 kb on + strand, within AO353_13900at 3089.145 kb on - strand, within AO353_13900at 3089.145 kb on - strand, within AO353_13900at 3089.145 kb on - strand, within AO353_13900at 3089.145 kb on - strand, within AO353_13900at 3089.145 kb on - strand, within AO353_13900at 3089.158 kb on + strand, within AO353_13900at 3089.159 kb on - strand, within AO353_13900at 3089.187 kb on - strand, within AO353_13900at 3089.390 kb on + strand, within AO353_13900at 3089.450 kb on + strand, within AO353_13900at 3089.450 kb on + strand, within AO353_13900at 3089.451 kb on - strand, within AO353_13900at 3089.451 kb on - strand, within AO353_13900at 3089.451 kb on - strand, within AO353_13900at 3089.491 kb on + strand, within AO353_13900at 3089.529 kb on + strand, within AO353_13900at 3089.529 kb on + strand, within AO353_13900at 3089.529 kb on + strand, within AO353_13900at 3089.529 kb on + strand, within AO353_13900at 3089.529 kb on + strand, within AO353_13900at 3089.529 kb on + strand, within AO353_13900at 3089.529 kb on + strand, within AO353_13900at 3089.530 kb on - strand, within AO353_13900at 3089.530 kb on - strand, within AO353_13900at 3089.530 kb on - strand, within AO353_13900at 3089.530 kb on - strand, within AO353_13900at 3089.530 kb on - strand, within AO353_13900at 3089.530 kb on - strand, within AO353_13900at 3089.530 kb on - strand, within AO353_13900at 3089.642 kb on + strand, within AO353_13900at 3089.642 kb on + strand, within AO353_13900at 3089.642 kb on + strand, within AO353_13900at 3089.643 kb on + strand, within AO353_13900at 3089.643 kb on - strand, within AO353_13900at 3089.643 kb on - strand, within AO353_13900at 3089.643 kb on - strand, within AO353_13900at 3089.681 kb on + strand, within AO353_13900at 3089.682 kb on - strand, within AO353_13900at 3089.682 kb on - strand, within AO353_13900at 3089.682 kb on - strand, within AO353_13900at 3089.682 kb on - strand, within AO353_13900at 3089.705 kb on + strand, within AO353_13900at 3089.705 kb on + strand, within AO353_13900at 3089.705 kb on + strand, within AO353_13900at 3089.706 kb on - strand, within AO353_13900at 3089.706 kb on - strand, within AO353_13900at 3089.706 kb on - strand, within AO353_13900at 3089.706 kb on - strand, within AO353_13900at 3089.866 kb on + strandat 3089.866 kb on + strandat 3090.097 kb on + strand, within AO353_13905at 3090.097 kb on + strand, within AO353_13905at 3090.097 kb on + strand, within AO353_13905at 3090.097 kb on + strand, within AO353_13905at 3090.097 kb on + strand, within AO353_13905at 3090.097 kb on + strand, within AO353_13905at 3090.097 kb on + strand, within AO353_13905at 3090.097 kb on + strand, within AO353_13905at 3090.097 kb on + strand, within AO353_13905at 3090.098 kb on - strand, within AO353_13905at 3090.098 kb on - strand, within AO353_13905at 3090.098 kb on - strand, within AO353_13905at 3090.098 kb on - strand, within AO353_13905at 3090.098 kb on - strand, within AO353_13905at 3090.098 kb on - strand, within AO353_13905at 3090.098 kb on - strand, within AO353_13905at 3090.098 kb on - strand, within AO353_13905at 3090.187 kb on + strand, within AO353_13905at 3090.188 kb on - strand, within AO353_13905at 3090.188 kb on - strand, within AO353_13905at 3090.188 kb on - strand, within AO353_13905at 3090.188 kb on - strand, within AO353_13905at 3090.406 kb on + strand, within AO353_13905at 3090.406 kb on + strand, within AO353_13905at 3090.406 kb on + strand, within AO353_13905at 3090.406 kb on + strand, within AO353_13905at 3090.406 kb on + strand, within AO353_13905at 3090.406 kb on + strand, within AO353_13905at 3090.406 kb on + strand, within AO353_13905at 3090.407 kb on - strand, within AO353_13905at 3090.407 kb on - strand, within AO353_13905at 3090.407 kb on - strand, within AO353_13905at 3090.448 kb on + strand, within AO353_13905at 3090.448 kb on + strand, within AO353_13905at 3090.449 kb on - strand, within AO353_13905at 3090.449 kb on - strand, within AO353_13905at 3090.449 kb on - strand, within AO353_13905at 3090.518 kb on - strand, within AO353_13905at 3090.559 kb on + strand, within AO353_13905at 3090.559 kb on + strand, within AO353_13905at 3090.559 kb on + strand, within AO353_13905at 3090.559 kb on + strand, within AO353_13905at 3090.559 kb on + strand, within AO353_13905at 3090.559 kb on + strand, within AO353_13905at 3090.559 kb on + strand, within AO353_13905at 3090.559 kb on + strand, within AO353_13905at 3090.559 kb on + strand, within AO353_13905at 3090.559 kb on + strand, within AO353_13905at 3090.559 kb on + strand, within AO353_13905at 3090.559 kb on + strand, within AO353_13905at 3090.559 kb on + strand, within AO353_13905at 3090.559 kb on + strand, within AO353_13905at 3090.559 kb on + strand, within AO353_13905at 3090.559 kb on + strand, within AO353_13905at 3090.559 kb on + strand, within AO353_13905at 3090.559 kb on + strand, within AO353_13905at 3090.559 kb on + strand, within AO353_13905at 3090.559 kb on + strand, within AO353_13905at 3090.559 kb on + strand, within AO353_13905at 3090.560 kb on - strand, within AO353_13905at 3090.560 kb on - strand, within AO353_13905at 3090.560 kb on - strand, within AO353_13905at 3090.560 kb on - strand, within AO353_13905at 3090.560 kb on - strand, within AO353_13905at 3090.560 kb on - strand, within AO353_13905at 3090.560 kb on - strand, within AO353_13905at 3090.560 kb on - strand, within AO353_13905at 3090.560 kb on - strand, within AO353_13905at 3090.560 kb on - strand, within AO353_13905at 3090.560 kb on - strand, within AO353_13905at 3090.560 kb on - strand, within AO353_13905at 3090.560 kb on - strand, within AO353_13905at 3090.560 kb on - strand, within AO353_13905at 3090.560 kb on - strand, within AO353_13905at 3090.560 kb on - strand, within AO353_13905at 3090.560 kb on - strand, within AO353_13905at 3090.560 kb on - strand, within AO353_13905at 3090.560 kb on - strand, within AO353_13905at 3090.603 kb on + strand, within AO353_13905at 3090.673 kb on + strand, within AO353_13905at 3090.673 kb on + strand, within AO353_13905at 3090.865 kb on + strand, within AO353_13905at 3090.866 kb on - strand, within AO353_13905at 3091.015 kb on + strandat 3091.015 kb on + strandat 3091.015 kb on + strandat 3091.015 kb on + strandat 3091.015 kb on + strandat 3091.015 kb on + strandat 3091.015 kb on + strandat 3091.016 kb on - strandat 3091.016 kb on - strandat 3091.016 kb on - strandat 3091.016 kb on - strandat 3091.176 kb on + strand, within AO353_13910at 3091.176 kb on + strand, within AO353_13910at 3091.176 kb on + strand, within AO353_13910at 3091.176 kb on + strand, within AO353_13910at 3091.177 kb on - strand, within AO353_13910at 3091.177 kb on - strand, within AO353_13910at 3091.177 kb on - strand, within AO353_13910at 3091.177 kb on - strand, within AO353_13910at 3091.177 kb on - strand, within AO353_13910at 3091.177 kb on - strand, within AO353_13910at 3091.177 kb on - strand, within AO353_13910at 3091.177 kb on - strand, within AO353_13910at 3091.241 kb on + strand, within AO353_13910at 3091.241 kb on + strand, within AO353_13910at 3091.241 kb on + strand, within AO353_13910at 3091.241 kb on + strand, within AO353_13910at 3091.242 kb on - strand, within AO353_13910at 3091.242 kb on - strand, within AO353_13910at 3091.422 kb on + strand, within AO353_13910at 3091.422 kb on + strand, within AO353_13910at 3091.422 kb on + strand, within AO353_13910at 3091.422 kb on + strand, within AO353_13910at 3091.422 kb on + strand, within AO353_13910at 3091.422 kb on + strand, within AO353_13910at 3091.422 kb on + strand, within AO353_13910at 3091.423 kb on - strand, within AO353_13910at 3091.423 kb on - strand, within AO353_13910at 3091.568 kb on - strand, within AO353_13910at 3091.568 kb on - strand, within AO353_13910

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.32 mM
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3,088,983 + +2.2
3,088,984 - +1.1
3,088,984 - +0.8
3,088,984 - -0.6
3,088,986 + -0.3
3,088,986 + -0.5
3,088,987 - +0.4
3,088,987 - -1.1
3,088,987 - -0.6
3,088,987 - -0.0
3,088,987 - -1.2
3,089,000 + -1.7
3,089,000 + -0.2
3,089,000 + -0.5
3,089,000 + -1.1
3,089,000 + -1.5
3,089,000 + +0.9
3,089,000 + -2.6
3,089,001 - -0.2
3,089,001 - -0.4
3,089,001 - -1.8
3,089,001 - -0.7
3,089,001 - -0.2
3,089,001 - +1.8
3,089,001 - +0.8
3,089,086 + -0.2
3,089,102 + AO353_13900 0.10 -0.2
3,089,102 + AO353_13900 0.10 +0.2
3,089,102 + AO353_13900 0.10 -0.6
3,089,102 + AO353_13900 0.10 +0.5
3,089,103 - AO353_13900 0.11 -1.4
3,089,103 - AO353_13900 0.11 -1.4
3,089,103 - AO353_13900 0.11 +1.8
3,089,103 - AO353_13900 0.11 -1.1
3,089,103 - AO353_13900 0.11 -0.1
3,089,127 + AO353_13900 0.13 -0.9
3,089,127 + AO353_13900 0.13 -0.5
3,089,127 + AO353_13900 0.13 -0.9
3,089,127 + AO353_13900 0.13 +0.6
3,089,127 + AO353_13900 0.13 -0.6
3,089,127 + AO353_13900 0.13 -0.3
3,089,128 - AO353_13900 0.13 +1.1
3,089,128 - AO353_13900 0.13 +1.2
3,089,144 + AO353_13900 0.15 -0.4
3,089,144 + AO353_13900 0.15 +0.8
3,089,144 + AO353_13900 0.15 +2.1
3,089,144 + AO353_13900 0.15 +1.0
3,089,144 + AO353_13900 0.15 +2.4
3,089,144 + AO353_13900 0.15 +1.4
3,089,145 - AO353_13900 0.15 -0.6
3,089,145 - AO353_13900 0.15 -0.1
3,089,145 - AO353_13900 0.15 +0.2
3,089,145 - AO353_13900 0.15 -0.2
3,089,145 - AO353_13900 0.15 -1.0
3,089,158 + AO353_13900 0.17 -0.9
3,089,159 - AO353_13900 0.17 +0.3
3,089,187 - AO353_13900 0.20 +1.0
3,089,390 + AO353_13900 0.43 -0.2
3,089,450 + AO353_13900 0.49 +1.9
3,089,450 + AO353_13900 0.49 +1.3
3,089,451 - AO353_13900 0.49 -0.2
3,089,451 - AO353_13900 0.49 -0.0
3,089,451 - AO353_13900 0.49 -0.0
3,089,491 + AO353_13900 0.54 -1.3
3,089,529 + AO353_13900 0.58 +1.6
3,089,529 + AO353_13900 0.58 +0.4
3,089,529 + AO353_13900 0.58 -0.7
3,089,529 + AO353_13900 0.58 -2.1
3,089,529 + AO353_13900 0.58 -0.2
3,089,529 + AO353_13900 0.58 -1.6
3,089,529 + AO353_13900 0.58 -2.0
3,089,530 - AO353_13900 0.58 +0.7
3,089,530 - AO353_13900 0.58 -0.4
3,089,530 - AO353_13900 0.58 -1.3
3,089,530 - AO353_13900 0.58 +0.2
3,089,530 - AO353_13900 0.58 -1.4
3,089,530 - AO353_13900 0.58 +0.3
3,089,530 - AO353_13900 0.58 +1.4
3,089,642 + AO353_13900 0.71 +0.6
3,089,642 + AO353_13900 0.71 -0.0
3,089,642 + AO353_13900 0.71 -0.6
3,089,643 + AO353_13900 0.71 -0.1
3,089,643 - AO353_13900 0.71 +0.6
3,089,643 - AO353_13900 0.71 +0.2
3,089,643 - AO353_13900 0.71 +0.1
3,089,681 + AO353_13900 0.75 -0.2
3,089,682 - AO353_13900 0.75 -1.5
3,089,682 - AO353_13900 0.75 +0.9
3,089,682 - AO353_13900 0.75 -1.9
3,089,682 - AO353_13900 0.75 +0.3
3,089,705 + AO353_13900 0.78 +0.3
3,089,705 + AO353_13900 0.78 +0.4
3,089,705 + AO353_13900 0.78 +0.1
3,089,706 - AO353_13900 0.78 -1.6
3,089,706 - AO353_13900 0.78 -0.4
3,089,706 - AO353_13900 0.78 -1.0
3,089,706 - AO353_13900 0.78 +1.0
3,089,866 + -2.2
3,089,866 + -2.2
3,090,097 + AO353_13905 0.13 -0.9
3,090,097 + AO353_13905 0.13 -0.2
3,090,097 + AO353_13905 0.13 -1.1
3,090,097 + AO353_13905 0.13 +1.6
3,090,097 + AO353_13905 0.13 -2.7
3,090,097 + AO353_13905 0.13 -1.7
3,090,097 + AO353_13905 0.13 -0.5
3,090,097 + AO353_13905 0.13 +0.2
3,090,097 + AO353_13905 0.13 -0.9
3,090,098 - AO353_13905 0.13 -2.4
3,090,098 - AO353_13905 0.13 +0.8
3,090,098 - AO353_13905 0.13 -0.5
3,090,098 - AO353_13905 0.13 -1.2
3,090,098 - AO353_13905 0.13 -1.3
3,090,098 - AO353_13905 0.13 +1.2
3,090,098 - AO353_13905 0.13 -0.9
3,090,098 - AO353_13905 0.13 +0.1
3,090,187 + AO353_13905 0.21 -1.1
3,090,188 - AO353_13905 0.21 -0.9
3,090,188 - AO353_13905 0.21 -0.6
3,090,188 - AO353_13905 0.21 -2.0
3,090,188 - AO353_13905 0.21 +0.2
3,090,406 + AO353_13905 0.41 -0.6
3,090,406 + AO353_13905 0.41 -0.9
3,090,406 + AO353_13905 0.41 +0.2
3,090,406 + AO353_13905 0.41 -1.9
3,090,406 + AO353_13905 0.41 -1.1
3,090,406 + AO353_13905 0.41 -2.1
3,090,406 + AO353_13905 0.41 -0.2
3,090,407 - AO353_13905 0.42 -2.4
3,090,407 - AO353_13905 0.42 -1.2
3,090,407 - AO353_13905 0.42 -2.4
3,090,448 + AO353_13905 0.45 -1.1
3,090,448 + AO353_13905 0.45 +0.8
3,090,449 - AO353_13905 0.45 +1.2
3,090,449 - AO353_13905 0.45 -1.0
3,090,449 - AO353_13905 0.45 -0.6
3,090,518 - AO353_13905 0.52 -0.4
3,090,559 + AO353_13905 0.56 -1.3
3,090,559 + AO353_13905 0.56 +0.2
3,090,559 + AO353_13905 0.56 -1.4
3,090,559 + AO353_13905 0.56 -1.7
3,090,559 + AO353_13905 0.56 -1.4
3,090,559 + AO353_13905 0.56 +1.0
3,090,559 + AO353_13905 0.56 -0.4
3,090,559 + AO353_13905 0.56 -0.4
3,090,559 + AO353_13905 0.56 -2.8
3,090,559 + AO353_13905 0.56 -1.0
3,090,559 + AO353_13905 0.56 -0.9
3,090,559 + AO353_13905 0.56 -1.0
3,090,559 + AO353_13905 0.56 -0.8
3,090,559 + AO353_13905 0.56 +1.0
3,090,559 + AO353_13905 0.56 -1.8
3,090,559 + AO353_13905 0.56 -2.3
3,090,559 + AO353_13905 0.56 -0.6
3,090,559 + AO353_13905 0.56 -0.6
3,090,559 + AO353_13905 0.56 +0.8
3,090,559 + AO353_13905 0.56 -1.6
3,090,559 + AO353_13905 0.56 -1.3
3,090,560 - AO353_13905 0.56 -1.6
3,090,560 - AO353_13905 0.56 +1.8
3,090,560 - AO353_13905 0.56 -0.1
3,090,560 - AO353_13905 0.56 -0.6
3,090,560 - AO353_13905 0.56 -1.2
3,090,560 - AO353_13905 0.56 -0.6
3,090,560 - AO353_13905 0.56 -2.6
3,090,560 - AO353_13905 0.56 +1.6
3,090,560 - AO353_13905 0.56 -0.8
3,090,560 - AO353_13905 0.56 -2.0
3,090,560 - AO353_13905 0.56 -2.6
3,090,560 - AO353_13905 0.56 -2.8
3,090,560 - AO353_13905 0.56 -1.3
3,090,560 - AO353_13905 0.56 -0.0
3,090,560 - AO353_13905 0.56 -0.9
3,090,560 - AO353_13905 0.56 -2.7
3,090,560 - AO353_13905 0.56 -2.7
3,090,560 - AO353_13905 0.56 -1.9
3,090,560 - AO353_13905 0.56 -0.8
3,090,603 + AO353_13905 0.60 -2.1
3,090,673 + AO353_13905 0.66 -2.1
3,090,673 + AO353_13905 0.66 +0.8
3,090,865 + AO353_13905 0.84 +0.2
3,090,866 - AO353_13905 0.84 +1.6
3,091,015 + -0.4
3,091,015 + -0.3
3,091,015 + -0.8
3,091,015 + -1.3
3,091,015 + -2.5
3,091,015 + -1.8
3,091,015 + +0.4
3,091,016 - -1.0
3,091,016 - +0.6
3,091,016 - +0.4
3,091,016 - -0.4
3,091,176 + AO353_13910 0.11 -0.6
3,091,176 + AO353_13910 0.11 -0.0
3,091,176 + AO353_13910 0.11 -0.3
3,091,176 + AO353_13910 0.11 +1.8
3,091,177 - AO353_13910 0.11 -1.1
3,091,177 - AO353_13910 0.11 -1.6
3,091,177 - AO353_13910 0.11 +0.7
3,091,177 - AO353_13910 0.11 -0.3
3,091,177 - AO353_13910 0.11 +0.3
3,091,177 - AO353_13910 0.11 -1.3
3,091,177 - AO353_13910 0.11 -2.9
3,091,177 - AO353_13910 0.11 -1.6
3,091,241 + AO353_13910 0.16 -1.8
3,091,241 + AO353_13910 0.16 -2.3
3,091,241 + AO353_13910 0.16 -2.2
3,091,241 + AO353_13910 0.16 -0.3
3,091,242 - AO353_13910 0.16 -0.2
3,091,242 - AO353_13910 0.16 -1.5
3,091,422 + AO353_13910 0.30 +0.1
3,091,422 + AO353_13910 0.30 -0.6
3,091,422 + AO353_13910 0.30 +0.7
3,091,422 + AO353_13910 0.30 -0.9
3,091,422 + AO353_13910 0.30 +0.7
3,091,422 + AO353_13910 0.30 -0.3
3,091,422 + AO353_13910 0.30 -1.5
3,091,423 - AO353_13910 0.30 -0.7
3,091,423 - AO353_13910 0.30 +0.8
3,091,568 - AO353_13910 0.41 +0.6
3,091,568 - AO353_13910 0.41 -0.6

Or see this region's nucleotide sequence