Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_12130

Experiment: Cobalt chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_12115 and AO353_12120 are separated by 151 nucleotidesAO353_12120 and AO353_12125 are separated by 1 nucleotidesAO353_12125 and AO353_12130 are separated by 56 nucleotidesAO353_12130 and AO353_12135 are separated by 230 nucleotidesAO353_12135 and AO353_12140 are separated by 76 nucleotides AO353_12115: AO353_12115 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, at 2,662,069 to 2,663,598 _12115 AO353_12120: AO353_12120 - sulfurtransferase, at 2,663,750 to 2,664,163 _12120 AO353_12125: AO353_12125 - glutaredoxin, at 2,664,165 to 2,664,419 _12125 AO353_12130: AO353_12130 - preprotein translocase subunit SecB, at 2,664,476 to 2,664,958 _12130 AO353_12135: AO353_12135 - rRNA methylase, at 2,665,189 to 2,665,644 _12135 AO353_12140: AO353_12140 - hypothetical protein, at 2,665,721 to 2,666,083 _12140 Position (kb) 2664 2665Strain fitness (log2 ratio) -2 -1 0 1 2at 2663.565 kb on + strandat 2663.592 kb on + strandat 2663.615 kb on + strandat 2663.616 kb on - strandat 2663.616 kb on - strandat 2663.616 kb on - strandat 2663.616 kb on - strandat 2663.616 kb on - strandat 2663.616 kb on - strandat 2663.621 kb on - strandat 2663.621 kb on - strandat 2663.621 kb on - strandat 2663.652 kb on + strandat 2663.653 kb on - strandat 2663.701 kb on + strandat 2663.701 kb on + strandat 2663.702 kb on - strandat 2663.702 kb on - strandat 2663.712 kb on + strandat 2663.712 kb on + strandat 2663.712 kb on + strandat 2663.712 kb on + strandat 2663.712 kb on + strandat 2663.712 kb on + strandat 2663.712 kb on + strandat 2663.712 kb on + strandat 2663.712 kb on + strandat 2663.712 kb on + strandat 2663.713 kb on - strandat 2663.713 kb on - strandat 2663.713 kb on - strandat 2663.714 kb on + strandat 2663.714 kb on + strandat 2663.714 kb on + strandat 2663.729 kb on + strandat 2663.729 kb on + strandat 2663.779 kb on + strandat 2663.779 kb on + strandat 2663.786 kb on + strandat 2663.787 kb on - strandat 2663.812 kb on - strand, within AO353_12120at 2664.098 kb on - strand, within AO353_12120at 2664.098 kb on - strand, within AO353_12120at 2664.165 kb on - strandat 2664.165 kb on - strandat 2664.165 kb on - strandat 2664.165 kb on - strandat 2664.183 kb on + strandat 2664.183 kb on + strandat 2664.184 kb on - strandat 2664.196 kb on - strand, within AO353_12125at 2664.205 kb on - strand, within AO353_12125at 2664.222 kb on + strand, within AO353_12125at 2664.222 kb on + strand, within AO353_12125at 2664.222 kb on + strand, within AO353_12125at 2664.222 kb on + strand, within AO353_12125at 2664.222 kb on + strand, within AO353_12125at 2664.222 kb on + strand, within AO353_12125at 2664.223 kb on - strand, within AO353_12125at 2664.223 kb on - strand, within AO353_12125at 2664.223 kb on - strand, within AO353_12125at 2664.223 kb on - strand, within AO353_12125at 2664.223 kb on - strand, within AO353_12125at 2664.244 kb on + strand, within AO353_12125at 2664.314 kb on + strand, within AO353_12125at 2664.314 kb on + strand, within AO353_12125at 2664.314 kb on + strand, within AO353_12125at 2664.314 kb on + strand, within AO353_12125at 2664.314 kb on + strand, within AO353_12125at 2664.314 kb on + strand, within AO353_12125at 2664.314 kb on + strand, within AO353_12125at 2664.314 kb on + strand, within AO353_12125at 2664.314 kb on + strand, within AO353_12125at 2664.315 kb on - strand, within AO353_12125at 2664.315 kb on - strand, within AO353_12125at 2664.315 kb on - strand, within AO353_12125at 2664.315 kb on - strand, within AO353_12125at 2664.315 kb on - strand, within AO353_12125at 2664.315 kb on - strand, within AO353_12125at 2664.315 kb on - strand, within AO353_12125at 2664.315 kb on - strand, within AO353_12125at 2664.315 kb on - strand, within AO353_12125at 2664.315 kb on - strand, within AO353_12125at 2664.315 kb on - strand, within AO353_12125at 2664.315 kb on - strand, within AO353_12125at 2664.315 kb on - strand, within AO353_12125at 2664.429 kb on + strandat 2664.429 kb on + strandat 2664.429 kb on + strandat 2664.429 kb on + strandat 2664.429 kb on + strandat 2664.445 kb on + strandat 2664.445 kb on + strandat 2664.445 kb on + strandat 2664.446 kb on - strandat 2664.446 kb on - strandat 2664.446 kb on - strandat 2664.446 kb on - strandat 2664.503 kb on - strandat 2664.545 kb on + strand, within AO353_12130at 2664.545 kb on + strand, within AO353_12130at 2664.545 kb on + strand, within AO353_12130at 2664.545 kb on + strand, within AO353_12130at 2664.545 kb on + strand, within AO353_12130at 2664.546 kb on - strand, within AO353_12130at 2664.546 kb on - strand, within AO353_12130at 2664.742 kb on + strand, within AO353_12130at 2664.742 kb on + strand, within AO353_12130at 2664.742 kb on + strand, within AO353_12130at 2664.743 kb on - strand, within AO353_12130at 2664.905 kb on + strand, within AO353_12130at 2664.906 kb on - strand, within AO353_12130at 2664.906 kb on - strand, within AO353_12130at 2664.956 kb on + strandat 2664.957 kb on - strandat 2665.008 kb on - strandat 2665.066 kb on + strandat 2665.175 kb on + strandat 2665.175 kb on + strandat 2665.190 kb on + strandat 2665.191 kb on - strandat 2665.191 kb on - strandat 2665.201 kb on + strandat 2665.201 kb on + strandat 2665.201 kb on + strandat 2665.201 kb on + strandat 2665.202 kb on - strandat 2665.202 kb on - strandat 2665.220 kb on + strandat 2665.484 kb on + strand, within AO353_12135at 2665.484 kb on + strand, within AO353_12135at 2665.484 kb on + strand, within AO353_12135at 2665.484 kb on + strand, within AO353_12135at 2665.484 kb on + strand, within AO353_12135at 2665.485 kb on - strand, within AO353_12135at 2665.485 kb on - strand, within AO353_12135at 2665.485 kb on - strand, within AO353_12135at 2665.493 kb on + strand, within AO353_12135at 2665.493 kb on + strand, within AO353_12135at 2665.494 kb on - strand, within AO353_12135at 2665.590 kb on + strand, within AO353_12135at 2665.660 kb on + strandat 2665.660 kb on + strandat 2665.660 kb on + strandat 2665.660 kb on + strandat 2665.660 kb on + strandat 2665.660 kb on + strandat 2665.661 kb on - strandat 2665.661 kb on - strandat 2665.661 kb on - strandat 2665.661 kb on - strandat 2665.678 kb on + strandat 2665.678 kb on + strandat 2665.678 kb on + strandat 2665.678 kb on + strandat 2665.678 kb on + strandat 2665.678 kb on + strandat 2665.679 kb on - strandat 2665.707 kb on + strandat 2665.707 kb on + strandat 2665.707 kb on + strandat 2665.707 kb on + strandat 2665.707 kb on + strandat 2665.707 kb on + strandat 2665.707 kb on + strandat 2665.708 kb on - strandat 2665.708 kb on - strandat 2665.708 kb on - strandat 2665.708 kb on - strandat 2665.708 kb on - strandat 2665.708 kb on - strandat 2665.708 kb on - strandat 2665.708 kb on - strandat 2665.708 kb on - strandat 2665.708 kb on - strandat 2665.708 kb on - strandat 2665.708 kb on - strandat 2665.708 kb on - strandat 2665.708 kb on - strandat 2665.789 kb on + strand, within AO353_12140at 2665.789 kb on + strand, within AO353_12140at 2665.790 kb on - strand, within AO353_12140at 2665.790 kb on - strand, within AO353_12140at 2665.790 kb on - strand, within AO353_12140at 2665.790 kb on - strand, within AO353_12140at 2665.790 kb on - strand, within AO353_12140at 2665.790 kb on - strand, within AO353_12140at 2665.794 kb on + strand, within AO353_12140at 2665.794 kb on + strand, within AO353_12140at 2665.794 kb on + strand, within AO353_12140at 2665.794 kb on + strand, within AO353_12140at 2665.794 kb on + strand, within AO353_12140at 2665.794 kb on + strand, within AO353_12140at 2665.794 kb on + strand, within AO353_12140at 2665.794 kb on + strand, within AO353_12140at 2665.795 kb on - strandat 2665.795 kb on - strand, within AO353_12140at 2665.795 kb on - strand, within AO353_12140at 2665.795 kb on - strand, within AO353_12140at 2665.795 kb on - strand, within AO353_12140at 2665.879 kb on + strand, within AO353_12140at 2665.879 kb on + strand, within AO353_12140

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.32 mM
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2,663,565 + -1.2
2,663,592 + +0.3
2,663,615 + -0.2
2,663,616 - -0.2
2,663,616 - -0.2
2,663,616 - -2.1
2,663,616 - -0.8
2,663,616 - -0.4
2,663,616 - -0.1
2,663,621 - -0.9
2,663,621 - -0.8
2,663,621 - -0.1
2,663,652 + -1.8
2,663,653 - -0.1
2,663,701 + +0.4
2,663,701 + -1.1
2,663,702 - -0.3
2,663,702 - +0.1
2,663,712 + -0.4
2,663,712 + -2.0
2,663,712 + -0.3
2,663,712 + +0.6
2,663,712 + +0.7
2,663,712 + +0.1
2,663,712 + +0.7
2,663,712 + -0.3
2,663,712 + +0.1
2,663,712 + +0.4
2,663,713 - -0.5
2,663,713 - +0.7
2,663,713 - +1.6
2,663,714 + +1.4
2,663,714 + -1.3
2,663,714 + -0.8
2,663,729 + -1.3
2,663,729 + +1.2
2,663,779 + +1.4
2,663,779 + -0.3
2,663,786 + -1.5
2,663,787 - +0.6
2,663,812 - AO353_12120 0.15 -0.1
2,664,098 - AO353_12120 0.84 -1.1
2,664,098 - AO353_12120 0.84 +0.2
2,664,165 - -1.4
2,664,165 - +0.4
2,664,165 - +1.0
2,664,165 - -0.6
2,664,183 + +0.4
2,664,183 + -0.5
2,664,184 - +1.7
2,664,196 - AO353_12125 0.12 -0.2
2,664,205 - AO353_12125 0.16 -0.5
2,664,222 + AO353_12125 0.22 -0.1
2,664,222 + AO353_12125 0.22 +0.6
2,664,222 + AO353_12125 0.22 +0.7
2,664,222 + AO353_12125 0.22 +0.4
2,664,222 + AO353_12125 0.22 -2.4
2,664,222 + AO353_12125 0.22 +0.5
2,664,223 - AO353_12125 0.23 -0.7
2,664,223 - AO353_12125 0.23 -0.3
2,664,223 - AO353_12125 0.23 +2.7
2,664,223 - AO353_12125 0.23 +0.4
2,664,223 - AO353_12125 0.23 -0.6
2,664,244 + AO353_12125 0.31 +0.9
2,664,314 + AO353_12125 0.58 +1.7
2,664,314 + AO353_12125 0.58 +1.2
2,664,314 + AO353_12125 0.58 +1.7
2,664,314 + AO353_12125 0.58 +0.7
2,664,314 + AO353_12125 0.58 +1.9
2,664,314 + AO353_12125 0.58 -0.2
2,664,314 + AO353_12125 0.58 +0.2
2,664,314 + AO353_12125 0.58 +1.0
2,664,314 + AO353_12125 0.58 -0.3
2,664,315 - AO353_12125 0.59 -1.9
2,664,315 - AO353_12125 0.59 +0.0
2,664,315 - AO353_12125 0.59 +1.2
2,664,315 - AO353_12125 0.59 -0.1
2,664,315 - AO353_12125 0.59 -1.6
2,664,315 - AO353_12125 0.59 -0.6
2,664,315 - AO353_12125 0.59 -0.6
2,664,315 - AO353_12125 0.59 -0.6
2,664,315 - AO353_12125 0.59 +0.2
2,664,315 - AO353_12125 0.59 +0.3
2,664,315 - AO353_12125 0.59 +0.5
2,664,315 - AO353_12125 0.59 -1.3
2,664,315 - AO353_12125 0.59 -0.2
2,664,429 + +1.3
2,664,429 + +0.2
2,664,429 + -0.3
2,664,429 + +1.6
2,664,429 + -0.1
2,664,445 + -0.6
2,664,445 + +0.7
2,664,445 + +1.4
2,664,446 - +1.0
2,664,446 - -1.1
2,664,446 - -1.2
2,664,446 - +0.7
2,664,503 - -1.5
2,664,545 + AO353_12130 0.14 -0.7
2,664,545 + AO353_12130 0.14 +0.2
2,664,545 + AO353_12130 0.14 -0.3
2,664,545 + AO353_12130 0.14 -0.6
2,664,545 + AO353_12130 0.14 -1.3
2,664,546 - AO353_12130 0.14 -1.2
2,664,546 - AO353_12130 0.14 -0.2
2,664,742 + AO353_12130 0.55 +0.6
2,664,742 + AO353_12130 0.55 -0.9
2,664,742 + AO353_12130 0.55 -1.4
2,664,743 - AO353_12130 0.55 -0.4
2,664,905 + AO353_12130 0.89 +0.7
2,664,906 - AO353_12130 0.89 -0.6
2,664,906 - AO353_12130 0.89 -1.5
2,664,956 + -2.6
2,664,957 - -0.1
2,665,008 - -1.9
2,665,066 + +0.2
2,665,175 + -0.5
2,665,175 + -0.3
2,665,190 + -0.7
2,665,191 - -1.0
2,665,191 - -0.0
2,665,201 + -1.5
2,665,201 + +1.0
2,665,201 + +0.3
2,665,201 + -0.2
2,665,202 - -1.2
2,665,202 - +0.5
2,665,220 + +0.7
2,665,484 + AO353_12135 0.65 +1.2
2,665,484 + AO353_12135 0.65 -0.4
2,665,484 + AO353_12135 0.65 +0.9
2,665,484 + AO353_12135 0.65 +1.0
2,665,484 + AO353_12135 0.65 +0.6
2,665,485 - AO353_12135 0.65 +0.7
2,665,485 - AO353_12135 0.65 -0.1
2,665,485 - AO353_12135 0.65 -0.6
2,665,493 + AO353_12135 0.67 +0.4
2,665,493 + AO353_12135 0.67 -0.2
2,665,494 - AO353_12135 0.67 +1.4
2,665,590 + AO353_12135 0.88 +0.7
2,665,660 + +1.4
2,665,660 + -0.2
2,665,660 + -0.7
2,665,660 + +2.0
2,665,660 + +0.7
2,665,660 + -1.3
2,665,661 - -0.2
2,665,661 - -0.6
2,665,661 - -1.1
2,665,661 - +0.2
2,665,678 + -0.3
2,665,678 + +0.7
2,665,678 + -0.3
2,665,678 + +0.2
2,665,678 + +1.3
2,665,678 + +1.3
2,665,679 - -0.1
2,665,707 + +0.7
2,665,707 + -0.3
2,665,707 + +0.4
2,665,707 + +0.9
2,665,707 + -0.7
2,665,707 + +0.1
2,665,707 + -0.6
2,665,708 - +0.1
2,665,708 - +0.7
2,665,708 - -0.5
2,665,708 - -1.4
2,665,708 - +0.2
2,665,708 - -0.8
2,665,708 - -0.9
2,665,708 - -0.5
2,665,708 - +1.1
2,665,708 - -0.5
2,665,708 - -0.5
2,665,708 - +1.6
2,665,708 - +0.8
2,665,708 - +0.6
2,665,789 + AO353_12140 0.19 +0.6
2,665,789 + AO353_12140 0.19 +0.6
2,665,790 - AO353_12140 0.19 -2.0
2,665,790 - AO353_12140 0.19 -0.2
2,665,790 - AO353_12140 0.19 +2.0
2,665,790 - AO353_12140 0.19 +1.0
2,665,790 - AO353_12140 0.19 -1.5
2,665,790 - AO353_12140 0.19 -1.0
2,665,794 + AO353_12140 0.20 +0.6
2,665,794 + AO353_12140 0.20 -0.4
2,665,794 + AO353_12140 0.20 +0.3
2,665,794 + AO353_12140 0.20 -0.1
2,665,794 + AO353_12140 0.20 -2.1
2,665,794 + AO353_12140 0.20 -0.4
2,665,794 + AO353_12140 0.20 +0.4
2,665,794 + AO353_12140 0.20 -0.3
2,665,795 - +1.2
2,665,795 - AO353_12140 0.20 -0.2
2,665,795 - AO353_12140 0.20 -0.2
2,665,795 - AO353_12140 0.20 -1.0
2,665,795 - AO353_12140 0.20 +1.1
2,665,879 + AO353_12140 0.44 +1.1
2,665,879 + AO353_12140 0.44 -2.1

Or see this region's nucleotide sequence