Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_10635

Experiment: Cobalt chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_10630 and AO353_10635 overlap by 4 nucleotidesAO353_10635 and AO353_10640 are separated by 66 nucleotidesAO353_10640 and AO353_10645 are separated by 170 nucleotides AO353_10630: AO353_10630 - 16S rRNA methyltransferase, at 2,330,597 to 2,331,907 _10630 AO353_10635: AO353_10635 - methionyl-tRNA formyltransferase, at 2,331,904 to 2,332,863 _10635 AO353_10640: AO353_10640 - peptide deformylase, at 2,332,930 to 2,333,436 _10640 AO353_10645: AO353_10645 - peptidoglycan-binding protein, at 2,333,607 to 2,334,632 _10645 Position (kb) 2331 2332 2333Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2331.354 kb on + strand, within AO353_10630at 2331.354 kb on + strand, within AO353_10630at 2331.354 kb on + strand, within AO353_10630at 2331.354 kb on + strand, within AO353_10630at 2331.354 kb on + strand, within AO353_10630at 2331.651 kb on + strand, within AO353_10630at 2331.651 kb on + strand, within AO353_10630at 2331.651 kb on + strand, within AO353_10630at 2331.651 kb on + strand, within AO353_10630at 2331.651 kb on + strand, within AO353_10630at 2331.651 kb on + strand, within AO353_10630at 2331.651 kb on + strand, within AO353_10630at 2331.651 kb on + strand, within AO353_10630at 2331.651 kb on + strand, within AO353_10630at 2331.651 kb on + strand, within AO353_10630at 2331.652 kb on - strand, within AO353_10630at 2331.652 kb on - strand, within AO353_10630at 2331.652 kb on - strand, within AO353_10630at 2331.652 kb on - strand, within AO353_10630at 2331.652 kb on - strand, within AO353_10630at 2331.652 kb on - strand, within AO353_10630at 2331.663 kb on + strand, within AO353_10630at 2331.862 kb on + strandat 2331.928 kb on + strandat 2331.928 kb on + strandat 2331.928 kb on + strandat 2331.929 kb on - strandat 2331.929 kb on - strandat 2331.929 kb on - strandat 2331.929 kb on - strandat 2333.443 kb on - strandat 2333.443 kb on - strandat 2333.443 kb on - strandat 2333.443 kb on - strandat 2333.443 kb on - strandat 2333.463 kb on - strandat 2333.463 kb on - strandat 2333.520 kb on - strandat 2333.520 kb on - strandat 2333.520 kb on - strandat 2333.520 kb on - strandat 2333.520 kb on - strandat 2333.520 kb on - strandat 2333.520 kb on - strandat 2333.520 kb on - strandat 2333.538 kb on - strandat 2333.538 kb on - strandat 2333.538 kb on - strandat 2333.538 kb on - strandat 2333.538 kb on - strandat 2333.575 kb on - strandat 2333.575 kb on - strandat 2333.589 kb on - strandat 2333.589 kb on - strandat 2333.589 kb on - strandat 2333.589 kb on - strandat 2333.589 kb on - strandat 2333.589 kb on - strandat 2333.589 kb on - strandat 2333.589 kb on - strandat 2333.589 kb on - strandat 2333.589 kb on - strandat 2333.589 kb on - strandat 2333.589 kb on - strandat 2333.589 kb on - strandat 2333.589 kb on - strandat 2333.589 kb on - strandat 2333.589 kb on - strandat 2333.589 kb on - strandat 2333.589 kb on - strandat 2333.592 kb on - strandat 2333.592 kb on - strandat 2333.592 kb on - strandat 2333.592 kb on - strandat 2333.697 kb on + strandat 2333.697 kb on + strandat 2333.697 kb on + strandat 2333.697 kb on + strandat 2333.697 kb on + strandat 2333.697 kb on + strandat 2333.697 kb on + strandat 2333.697 kb on + strandat 2333.697 kb on + strandat 2333.697 kb on + strandat 2333.697 kb on + strandat 2333.698 kb on - strandat 2333.698 kb on - strandat 2333.698 kb on - strandat 2333.698 kb on - strandat 2333.698 kb on - strandat 2333.698 kb on - strandat 2333.698 kb on - strandat 2333.698 kb on - strandat 2333.698 kb on - strandat 2333.698 kb on - strandat 2333.698 kb on - strandat 2333.698 kb on - strandat 2333.698 kb on - strandat 2333.698 kb on - strandat 2333.698 kb on - strandat 2333.698 kb on - strandat 2333.698 kb on - strandat 2333.698 kb on - strandat 2333.698 kb on - strandat 2333.698 kb on - strandat 2333.698 kb on - strandat 2333.698 kb on - strandat 2333.742 kb on + strand, within AO353_10645at 2333.742 kb on + strand, within AO353_10645at 2333.742 kb on + strand, within AO353_10645at 2333.742 kb on + strand, within AO353_10645at 2333.742 kb on + strand, within AO353_10645at 2333.742 kb on + strand, within AO353_10645at 2333.743 kb on - strand, within AO353_10645at 2333.743 kb on - strand, within AO353_10645at 2333.743 kb on - strand, within AO353_10645at 2333.814 kb on + strand, within AO353_10645at 2333.814 kb on + strand, within AO353_10645at 2333.814 kb on + strand, within AO353_10645at 2333.815 kb on - strand, within AO353_10645at 2333.815 kb on - strand, within AO353_10645at 2333.815 kb on - strand, within AO353_10645at 2333.815 kb on - strand, within AO353_10645at 2333.815 kb on - strand, within AO353_10645at 2333.841 kb on + strand, within AO353_10645at 2333.841 kb on + strand, within AO353_10645at 2333.841 kb on + strand, within AO353_10645at 2333.841 kb on + strand, within AO353_10645at 2333.841 kb on + strand, within AO353_10645at 2333.841 kb on + strand, within AO353_10645at 2333.841 kb on + strand, within AO353_10645at 2333.841 kb on + strand, within AO353_10645at 2333.841 kb on + strand, within AO353_10645at 2333.841 kb on + strand, within AO353_10645at 2333.841 kb on + strand, within AO353_10645at 2333.841 kb on + strand, within AO353_10645at 2333.842 kb on - strand, within AO353_10645at 2333.842 kb on - strand, within AO353_10645at 2333.842 kb on - strand, within AO353_10645at 2333.842 kb on - strand, within AO353_10645at 2333.842 kb on - strand, within AO353_10645at 2333.842 kb on - strand, within AO353_10645at 2333.842 kb on - strand, within AO353_10645at 2333.842 kb on - strand, within AO353_10645at 2333.842 kb on - strand, within AO353_10645at 2333.842 kb on - strand, within AO353_10645at 2333.842 kb on - strand, within AO353_10645at 2333.842 kb on - strand, within AO353_10645

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.32 mM
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2,331,354 + AO353_10630 0.58 +0.8
2,331,354 + AO353_10630 0.58 +0.8
2,331,354 + AO353_10630 0.58 -0.2
2,331,354 + AO353_10630 0.58 +1.1
2,331,354 + AO353_10630 0.58 +0.5
2,331,651 + AO353_10630 0.80 +1.0
2,331,651 + AO353_10630 0.80 -0.6
2,331,651 + AO353_10630 0.80 -0.0
2,331,651 + AO353_10630 0.80 -0.6
2,331,651 + AO353_10630 0.80 -0.2
2,331,651 + AO353_10630 0.80 +0.1
2,331,651 + AO353_10630 0.80 +1.5
2,331,651 + AO353_10630 0.80 +0.1
2,331,651 + AO353_10630 0.80 +1.3
2,331,651 + AO353_10630 0.80 +1.0
2,331,652 - AO353_10630 0.80 -1.8
2,331,652 - AO353_10630 0.80 +1.3
2,331,652 - AO353_10630 0.80 -0.1
2,331,652 - AO353_10630 0.80 +0.1
2,331,652 - AO353_10630 0.80 +1.5
2,331,652 - AO353_10630 0.80 -1.2
2,331,663 + AO353_10630 0.81 +0.4
2,331,862 + -0.5
2,331,928 + -2.1
2,331,928 + -0.9
2,331,928 + +0.8
2,331,929 - -2.6
2,331,929 - +0.3
2,331,929 - +0.9
2,331,929 - +0.9
2,333,443 - -0.8
2,333,443 - -1.2
2,333,443 - +0.4
2,333,443 - -0.8
2,333,443 - -0.0
2,333,463 - -0.2
2,333,463 - -0.2
2,333,520 - +2.6
2,333,520 - +0.7
2,333,520 - +0.3
2,333,520 - -1.2
2,333,520 - -0.5
2,333,520 - -0.6
2,333,520 - -0.3
2,333,520 - +1.3
2,333,538 - -0.2
2,333,538 - -1.6
2,333,538 - +0.4
2,333,538 - +0.6
2,333,538 - -1.2
2,333,575 - -0.8
2,333,575 - +0.0
2,333,589 - -1.4
2,333,589 - -0.3
2,333,589 - +0.1
2,333,589 - -1.3
2,333,589 - +0.8
2,333,589 - -0.9
2,333,589 - -0.0
2,333,589 - -0.9
2,333,589 - +0.7
2,333,589 - -2.3
2,333,589 - +1.4
2,333,589 - -0.1
2,333,589 - -0.6
2,333,589 - +0.7
2,333,589 - -0.1
2,333,589 - -0.8
2,333,589 - -1.4
2,333,589 - -0.4
2,333,592 - -0.9
2,333,592 - -1.8
2,333,592 - +1.1
2,333,592 - -0.4
2,333,697 + +1.0
2,333,697 + +0.7
2,333,697 + +1.4
2,333,697 + +1.0
2,333,697 + -0.1
2,333,697 + -1.0
2,333,697 + -0.4
2,333,697 + +0.1
2,333,697 + +0.3
2,333,697 + +0.3
2,333,697 + +2.9
2,333,698 - +0.3
2,333,698 - +0.3
2,333,698 - +1.3
2,333,698 - +0.1
2,333,698 - -0.8
2,333,698 - -0.3
2,333,698 - +0.7
2,333,698 - +2.6
2,333,698 - -1.1
2,333,698 - +0.1
2,333,698 - +0.9
2,333,698 - -0.9
2,333,698 - -0.9
2,333,698 - +0.2
2,333,698 - -0.7
2,333,698 - +1.0
2,333,698 - -1.3
2,333,698 - -1.1
2,333,698 - +0.9
2,333,698 - -2.0
2,333,698 - -0.9
2,333,698 - +0.2
2,333,742 + AO353_10645 0.13 +1.1
2,333,742 + AO353_10645 0.13 +0.6
2,333,742 + AO353_10645 0.13 +0.1
2,333,742 + AO353_10645 0.13 +0.3
2,333,742 + AO353_10645 0.13 -0.0
2,333,742 + AO353_10645 0.13 +1.1
2,333,743 - AO353_10645 0.13 +0.2
2,333,743 - AO353_10645 0.13 -1.4
2,333,743 - AO353_10645 0.13 +0.3
2,333,814 + AO353_10645 0.20 +0.2
2,333,814 + AO353_10645 0.20 +0.6
2,333,814 + AO353_10645 0.20 -1.2
2,333,815 - AO353_10645 0.20 -0.2
2,333,815 - AO353_10645 0.20 +0.4
2,333,815 - AO353_10645 0.20 -0.0
2,333,815 - AO353_10645 0.20 -0.1
2,333,815 - AO353_10645 0.20 -0.3
2,333,841 + AO353_10645 0.23 +0.1
2,333,841 + AO353_10645 0.23 -2.0
2,333,841 + AO353_10645 0.23 +0.3
2,333,841 + AO353_10645 0.23 -0.2
2,333,841 + AO353_10645 0.23 +1.4
2,333,841 + AO353_10645 0.23 -0.8
2,333,841 + AO353_10645 0.23 -0.8
2,333,841 + AO353_10645 0.23 +2.2
2,333,841 + AO353_10645 0.23 +0.1
2,333,841 + AO353_10645 0.23 +0.3
2,333,841 + AO353_10645 0.23 +0.3
2,333,841 + AO353_10645 0.23 -0.1
2,333,842 - AO353_10645 0.23 -0.6
2,333,842 - AO353_10645 0.23 -0.4
2,333,842 - AO353_10645 0.23 +0.1
2,333,842 - AO353_10645 0.23 +1.8
2,333,842 - AO353_10645 0.23 +0.4
2,333,842 - AO353_10645 0.23 +0.6
2,333,842 - AO353_10645 0.23 +0.4
2,333,842 - AO353_10645 0.23 +1.0
2,333,842 - AO353_10645 0.23 -0.1
2,333,842 - AO353_10645 0.23 -0.6
2,333,842 - AO353_10645 0.23 -0.7
2,333,842 - AO353_10645 0.23 -0.0

Or see this region's nucleotide sequence