Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_09885

Experiment: Cobalt chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_09880 and AO353_09885 are separated by 180 nucleotidesAO353_09885 and AO353_09890 are separated by 74 nucleotides AO353_09880: AO353_09880 - chemotaxis protein CheY, at 2,156,599 to 2,157,549 _09880 AO353_09885: AO353_09885 - transcriptional regulator PhoU, at 2,157,730 to 2,158,491 _09885 AO353_09890: AO353_09890 - phosphate ABC transporter ATP-binding protein, at 2,158,566 to 2,159,399 _09890 Position (kb) 2157 2158 2159Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2156.753 kb on + strand, within AO353_09880at 2156.753 kb on + strand, within AO353_09880at 2156.753 kb on + strand, within AO353_09880at 2156.898 kb on + strand, within AO353_09880at 2156.898 kb on + strand, within AO353_09880at 2156.899 kb on - strand, within AO353_09880at 2156.899 kb on - strand, within AO353_09880at 2156.914 kb on + strand, within AO353_09880at 2156.914 kb on + strand, within AO353_09880at 2156.914 kb on + strand, within AO353_09880at 2156.914 kb on + strand, within AO353_09880at 2156.914 kb on + strand, within AO353_09880at 2156.914 kb on + strand, within AO353_09880at 2156.914 kb on + strand, within AO353_09880at 2156.914 kb on + strand, within AO353_09880at 2156.914 kb on + strand, within AO353_09880at 2156.914 kb on + strand, within AO353_09880at 2156.914 kb on + strand, within AO353_09880at 2156.915 kb on - strand, within AO353_09880at 2156.915 kb on - strand, within AO353_09880at 2156.915 kb on - strand, within AO353_09880at 2156.915 kb on - strand, within AO353_09880at 2156.915 kb on - strand, within AO353_09880at 2157.236 kb on + strand, within AO353_09880at 2157.236 kb on + strand, within AO353_09880at 2157.237 kb on - strand, within AO353_09880at 2157.237 kb on - strand, within AO353_09880at 2157.237 kb on - strand, within AO353_09880at 2157.237 kb on - strand, within AO353_09880at 2157.295 kb on - strand, within AO353_09880at 2157.473 kb on + strandat 2157.473 kb on + strandat 2157.473 kb on + strandat 2157.473 kb on + strandat 2157.473 kb on + strandat 2157.473 kb on + strandat 2157.473 kb on + strandat 2157.473 kb on + strandat 2157.473 kb on + strandat 2157.473 kb on + strandat 2157.473 kb on + strandat 2157.474 kb on - strandat 2157.474 kb on - strandat 2157.474 kb on - strandat 2157.474 kb on - strandat 2157.474 kb on - strandat 2157.474 kb on - strandat 2157.507 kb on + strandat 2157.508 kb on - strandat 2157.560 kb on + strandat 2157.561 kb on - strandat 2157.562 kb on + strandat 2157.562 kb on + strandat 2157.562 kb on + strandat 2157.562 kb on + strandat 2157.562 kb on + strandat 2157.562 kb on + strandat 2157.562 kb on + strandat 2157.562 kb on + strandat 2157.562 kb on + strandat 2157.562 kb on + strandat 2157.562 kb on + strandat 2157.562 kb on + strandat 2157.562 kb on + strandat 2157.562 kb on + strandat 2157.563 kb on - strandat 2157.563 kb on - strandat 2157.563 kb on - strandat 2157.563 kb on - strandat 2157.563 kb on - strandat 2157.563 kb on - strandat 2157.563 kb on - strandat 2157.563 kb on - strandat 2157.563 kb on - strandat 2157.580 kb on + strandat 2157.580 kb on + strandat 2157.580 kb on + strandat 2157.581 kb on - strandat 2157.717 kb on + strandat 2157.717 kb on + strandat 2157.717 kb on + strandat 2157.717 kb on + strandat 2157.717 kb on + strandat 2157.717 kb on + strandat 2157.717 kb on + strandat 2157.718 kb on - strandat 2157.718 kb on - strandat 2157.718 kb on - strandat 2157.718 kb on - strandat 2157.731 kb on + strandat 2157.731 kb on + strandat 2157.731 kb on + strandat 2157.731 kb on + strandat 2157.731 kb on + strandat 2157.731 kb on + strandat 2157.731 kb on + strandat 2157.731 kb on + strandat 2157.731 kb on + strandat 2157.731 kb on + strandat 2157.731 kb on + strandat 2157.731 kb on + strandat 2157.731 kb on + strandat 2157.731 kb on + strandat 2157.731 kb on + strandat 2157.731 kb on + strandat 2157.732 kb on - strandat 2157.732 kb on - strandat 2157.732 kb on - strandat 2157.732 kb on - strandat 2157.732 kb on - strandat 2157.732 kb on - strandat 2157.732 kb on - strandat 2157.732 kb on - strandat 2157.732 kb on - strandat 2157.732 kb on - strandat 2157.732 kb on - strandat 2157.732 kb on - strandat 2157.732 kb on - strandat 2157.732 kb on - strandat 2157.732 kb on - strandat 2157.732 kb on - strandat 2157.732 kb on - strandat 2157.732 kb on - strandat 2157.732 kb on - strandat 2157.732 kb on - strandat 2157.732 kb on - strandat 2157.735 kb on + strandat 2157.735 kb on + strandat 2157.735 kb on + strandat 2157.735 kb on + strandat 2157.736 kb on - strandat 2157.736 kb on - strandat 2157.736 kb on - strandat 2157.736 kb on - strandat 2157.736 kb on - strandat 2157.736 kb on - strandat 2157.736 kb on - strandat 2157.759 kb on + strandat 2157.842 kb on + strand, within AO353_09885at 2157.842 kb on + strand, within AO353_09885at 2157.842 kb on + strand, within AO353_09885at 2157.842 kb on + strand, within AO353_09885at 2157.843 kb on - strand, within AO353_09885at 2157.843 kb on - strandat 2157.953 kb on + strand, within AO353_09885at 2157.983 kb on + strand, within AO353_09885at 2158.567 kb on + strandat 2158.567 kb on + strandat 2158.567 kb on + strandat 2158.567 kb on + strandat 2158.568 kb on - strandat 2158.568 kb on - strandat 2158.568 kb on - strandat 2158.663 kb on + strand, within AO353_09890at 2158.663 kb on + strand, within AO353_09890at 2158.663 kb on + strand, within AO353_09890at 2158.663 kb on + strand, within AO353_09890at 2158.663 kb on + strand, within AO353_09890at 2158.663 kb on + strand, within AO353_09890at 2158.663 kb on + strand, within AO353_09890at 2158.663 kb on + strand, within AO353_09890at 2158.663 kb on + strand, within AO353_09890at 2158.664 kb on - strand, within AO353_09890at 2158.664 kb on - strand, within AO353_09890at 2158.664 kb on - strand, within AO353_09890at 2158.664 kb on - strand, within AO353_09890at 2158.751 kb on - strand, within AO353_09890at 2158.841 kb on + strand, within AO353_09890at 2158.841 kb on + strand, within AO353_09890at 2158.842 kb on - strand, within AO353_09890at 2158.842 kb on - strand, within AO353_09890at 2159.003 kb on - strand, within AO353_09890at 2159.017 kb on + strand, within AO353_09890at 2159.101 kb on + strand, within AO353_09890at 2159.281 kb on + strand, within AO353_09890at 2159.281 kb on + strand, within AO353_09890at 2159.417 kb on - strandat 2159.457 kb on + strandat 2159.471 kb on + strandat 2159.471 kb on + strandat 2159.471 kb on + strandat 2159.472 kb on - strandat 2159.472 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.32 mM
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2,156,753 + AO353_09880 0.16 +0.1
2,156,753 + AO353_09880 0.16 -1.5
2,156,753 + AO353_09880 0.16 +0.0
2,156,898 + AO353_09880 0.31 +0.0
2,156,898 + AO353_09880 0.31 -1.3
2,156,899 - AO353_09880 0.32 -1.3
2,156,899 - AO353_09880 0.32 +0.3
2,156,914 + AO353_09880 0.33 -0.9
2,156,914 + AO353_09880 0.33 +1.2
2,156,914 + AO353_09880 0.33 -0.4
2,156,914 + AO353_09880 0.33 +1.1
2,156,914 + AO353_09880 0.33 -0.7
2,156,914 + AO353_09880 0.33 -0.8
2,156,914 + AO353_09880 0.33 +0.3
2,156,914 + AO353_09880 0.33 -0.8
2,156,914 + AO353_09880 0.33 -0.9
2,156,914 + AO353_09880 0.33 -0.7
2,156,914 + AO353_09880 0.33 +0.2
2,156,915 - AO353_09880 0.33 -0.7
2,156,915 - AO353_09880 0.33 +1.0
2,156,915 - AO353_09880 0.33 -0.2
2,156,915 - AO353_09880 0.33 -1.2
2,156,915 - AO353_09880 0.33 -1.2
2,157,236 + AO353_09880 0.67 -0.4
2,157,236 + AO353_09880 0.67 +0.5
2,157,237 - AO353_09880 0.67 +1.1
2,157,237 - AO353_09880 0.67 -1.4
2,157,237 - AO353_09880 0.67 -0.0
2,157,237 - AO353_09880 0.67 +0.3
2,157,295 - AO353_09880 0.73 +0.3
2,157,473 + +0.5
2,157,473 + -0.7
2,157,473 + +0.2
2,157,473 + -0.5
2,157,473 + +1.5
2,157,473 + +0.1
2,157,473 + +1.0
2,157,473 + +1.5
2,157,473 + +0.5
2,157,473 + -2.0
2,157,473 + -1.9
2,157,474 - +0.1
2,157,474 - +1.9
2,157,474 - +0.8
2,157,474 - -1.5
2,157,474 - -0.8
2,157,474 - -0.1
2,157,507 + -0.3
2,157,508 - -0.7
2,157,560 + -0.1
2,157,561 - -0.7
2,157,562 + -1.4
2,157,562 + +1.4
2,157,562 + +0.7
2,157,562 + +0.2
2,157,562 + +0.3
2,157,562 + -1.0
2,157,562 + +0.2
2,157,562 + +1.1
2,157,562 + -0.9
2,157,562 + -3.2
2,157,562 + -1.4
2,157,562 + +1.7
2,157,562 + -0.9
2,157,562 + +0.7
2,157,563 - -1.1
2,157,563 - -0.4
2,157,563 - +1.3
2,157,563 - +0.6
2,157,563 - -0.9
2,157,563 - +0.9
2,157,563 - -0.4
2,157,563 - +1.0
2,157,563 - -0.1
2,157,580 + +0.1
2,157,580 + -1.4
2,157,580 + -0.8
2,157,581 - +1.0
2,157,717 + -1.7
2,157,717 + -0.1
2,157,717 + -1.4
2,157,717 + +0.3
2,157,717 + +0.1
2,157,717 + +1.0
2,157,717 + +0.1
2,157,718 - -0.4
2,157,718 - +0.2
2,157,718 - +0.3
2,157,718 - +0.2
2,157,731 + +2.2
2,157,731 + +0.4
2,157,731 + -0.6
2,157,731 + -1.7
2,157,731 + -1.5
2,157,731 + +0.6
2,157,731 + -0.3
2,157,731 + +0.2
2,157,731 + -1.0
2,157,731 + -1.4
2,157,731 + -0.3
2,157,731 + -1.4
2,157,731 + -0.7
2,157,731 + -0.5
2,157,731 + -0.6
2,157,731 + -1.3
2,157,732 - +1.2
2,157,732 - +1.5
2,157,732 - -0.1
2,157,732 - -0.1
2,157,732 - +1.0
2,157,732 - -0.1
2,157,732 - +0.4
2,157,732 - +1.3
2,157,732 - +0.3
2,157,732 - +1.4
2,157,732 - +0.2
2,157,732 - -0.2
2,157,732 - -1.3
2,157,732 - -0.2
2,157,732 - -1.0
2,157,732 - -0.9
2,157,732 - +1.6
2,157,732 - -0.2
2,157,732 - +0.2
2,157,732 - -0.8
2,157,732 - +1.7
2,157,735 + -1.1
2,157,735 + +1.0
2,157,735 + -0.1
2,157,735 + -2.2
2,157,736 - -0.9
2,157,736 - +0.4
2,157,736 - +0.7
2,157,736 - -0.2
2,157,736 - -0.2
2,157,736 - +0.7
2,157,736 - +1.6
2,157,759 + +0.6
2,157,842 + AO353_09885 0.15 -1.6
2,157,842 + AO353_09885 0.15 -0.9
2,157,842 + AO353_09885 0.15 -1.7
2,157,842 + AO353_09885 0.15 -0.6
2,157,843 - AO353_09885 0.15 -1.5
2,157,843 - +0.3
2,157,953 + AO353_09885 0.29 +1.2
2,157,983 + AO353_09885 0.33 -0.4
2,158,567 + -1.2
2,158,567 + +0.4
2,158,567 + -0.2
2,158,567 + -0.6
2,158,568 - +0.5
2,158,568 - +0.4
2,158,568 - +1.2
2,158,663 + AO353_09890 0.12 -1.4
2,158,663 + AO353_09890 0.12 -1.1
2,158,663 + AO353_09890 0.12 -0.1
2,158,663 + AO353_09890 0.12 -1.2
2,158,663 + AO353_09890 0.12 -1.5
2,158,663 + AO353_09890 0.12 -0.6
2,158,663 + AO353_09890 0.12 -0.3
2,158,663 + AO353_09890 0.12 +0.4
2,158,663 + AO353_09890 0.12 -1.1
2,158,664 - AO353_09890 0.12 -1.4
2,158,664 - AO353_09890 0.12 +0.5
2,158,664 - AO353_09890 0.12 -0.1
2,158,664 - AO353_09890 0.12 +0.2
2,158,751 - AO353_09890 0.22 +0.2
2,158,841 + AO353_09890 0.33 +0.4
2,158,841 + AO353_09890 0.33 -0.8
2,158,842 - AO353_09890 0.33 -0.6
2,158,842 - AO353_09890 0.33 -1.2
2,159,003 - AO353_09890 0.52 -1.6
2,159,017 + AO353_09890 0.54 -0.6
2,159,101 + AO353_09890 0.64 +1.0
2,159,281 + AO353_09890 0.86 -1.7
2,159,281 + AO353_09890 0.86 -1.2
2,159,417 - +1.1
2,159,457 + -1.3
2,159,471 + -1.4
2,159,471 + +2.0
2,159,471 + -0.8
2,159,472 - +0.3
2,159,472 - -1.4

Or see this region's nucleotide sequence