Experiment: Cobalt chloride 0.32 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_09105 and AO353_09110 are separated by 152 nucleotides AO353_09110 and AO353_09115 are separated by 98 nucleotides
AO353_09105: AO353_09105 - LysR family transcriptional regulator, at 1,998,555 to 1,999,475
_09105
AO353_09110: AO353_09110 - MATE family efflux transporter, at 1,999,628 to 2,001,034
_09110
AO353_09115: AO353_09115 - diguanylate cyclase, at 2,001,133 to 2,002,797
_09115
Position (kb)
1999
2000
2001
2002 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1998.667 kb on + strand, within AO353_09105 at 1998.667 kb on + strand, within AO353_09105 at 1998.668 kb on - strand, within AO353_09105 at 1998.668 kb on - strand, within AO353_09105 at 1998.668 kb on - strand, within AO353_09105 at 1998.670 kb on + strand, within AO353_09105 at 1998.670 kb on + strand, within AO353_09105 at 1998.671 kb on - strand, within AO353_09105 at 1998.671 kb on - strand, within AO353_09105 at 1998.671 kb on - strand, within AO353_09105 at 1998.671 kb on - strand, within AO353_09105 at 1998.671 kb on - strand, within AO353_09105 at 1998.671 kb on - strand, within AO353_09105 at 1998.671 kb on - strand, within AO353_09105 at 1998.671 kb on - strand, within AO353_09105 at 1998.806 kb on + strand, within AO353_09105 at 1998.806 kb on + strand, within AO353_09105 at 1998.854 kb on + strand, within AO353_09105 at 1998.854 kb on + strand, within AO353_09105 at 1998.854 kb on + strand, within AO353_09105 at 1998.854 kb on + strand, within AO353_09105 at 1998.854 kb on + strand, within AO353_09105 at 1998.855 kb on - strand, within AO353_09105 at 1998.855 kb on - strand, within AO353_09105 at 1998.855 kb on - strand, within AO353_09105 at 1998.855 kb on - strand, within AO353_09105 at 1998.855 kb on - strand, within AO353_09105 at 1998.855 kb on - strand, within AO353_09105 at 1998.911 kb on + strand, within AO353_09105 at 1998.912 kb on - strand, within AO353_09105 at 1998.994 kb on + strand, within AO353_09105 at 1998.994 kb on + strand, within AO353_09105 at 1998.994 kb on + strand, within AO353_09105 at 1998.995 kb on - strand, within AO353_09105 at 1998.995 kb on - strand, within AO353_09105 at 1998.995 kb on - strand, within AO353_09105 at 1998.995 kb on - strand, within AO353_09105 at 1998.995 kb on - strand, within AO353_09105 at 1998.995 kb on - strand, within AO353_09105 at 1998.995 kb on - strand, within AO353_09105 at 1998.995 kb on - strand, within AO353_09105 at 1998.995 kb on - strand, within AO353_09105 at 1998.995 kb on - strand, within AO353_09105 at 1999.220 kb on + strand, within AO353_09105 at 1999.220 kb on + strand, within AO353_09105 at 1999.220 kb on + strand, within AO353_09105 at 1999.220 kb on + strand, within AO353_09105 at 1999.221 kb on - strand, within AO353_09105 at 1999.221 kb on - strand, within AO353_09105 at 1999.221 kb on - strand, within AO353_09105 at 1999.221 kb on - strand, within AO353_09105 at 1999.221 kb on - strand, within AO353_09105 at 1999.221 kb on - strand, within AO353_09105 at 1999.221 kb on - strand, within AO353_09105 at 1999.221 kb on - strand, within AO353_09105 at 1999.221 kb on - strand, within AO353_09105 at 1999.221 kb on - strand, within AO353_09105 at 1999.221 kb on - strand, within AO353_09105 at 1999.221 kb on - strand, within AO353_09105 at 1999.349 kb on + strand, within AO353_09105 at 1999.350 kb on - strand, within AO353_09105 at 1999.350 kb on - strand, within AO353_09105 at 1999.406 kb on + strand at 1999.450 kb on + strand at 1999.450 kb on + strand at 1999.450 kb on + strand at 1999.451 kb on - strand at 1999.451 kb on - strand at 1999.451 kb on - strand at 1999.451 kb on - strand at 1999.451 kb on - strand at 1999.451 kb on - strand at 1999.451 kb on - strand at 1999.451 kb on - strand at 1999.451 kb on - strand at 1999.451 kb on - strand at 1999.488 kb on + strand at 1999.488 kb on + strand at 1999.488 kb on + strand at 1999.488 kb on + strand at 1999.488 kb on + strand at 1999.488 kb on + strand at 1999.488 kb on + strand at 1999.488 kb on + strand at 1999.488 kb on + strand at 1999.488 kb on + strand at 1999.488 kb on + strand at 1999.489 kb on - strand at 1999.489 kb on - strand at 1999.489 kb on - strand at 1999.490 kb on + strand at 1999.510 kb on - strand at 1999.535 kb on + strand at 1999.535 kb on + strand at 1999.652 kb on - strand at 1999.796 kb on + strand, within AO353_09110 at 1999.796 kb on + strand, within AO353_09110 at 1999.796 kb on + strand, within AO353_09110 at 1999.797 kb on - strand, within AO353_09110 at 1999.797 kb on - strand, within AO353_09110 at 1999.797 kb on - strand, within AO353_09110 at 1999.797 kb on - strand, within AO353_09110 at 2000.083 kb on + strand, within AO353_09110 at 2000.084 kb on - strand, within AO353_09110 at 2000.084 kb on - strand, within AO353_09110 at 2000.159 kb on + strand, within AO353_09110 at 2000.159 kb on + strand, within AO353_09110 at 2000.159 kb on + strand, within AO353_09110 at 2000.159 kb on + strand, within AO353_09110 at 2000.159 kb on + strand, within AO353_09110 at 2000.159 kb on + strand, within AO353_09110 at 2000.159 kb on + strand, within AO353_09110 at 2000.159 kb on + strand, within AO353_09110 at 2000.159 kb on + strand, within AO353_09110 at 2000.160 kb on - strand, within AO353_09110 at 2000.160 kb on - strand, within AO353_09110 at 2000.160 kb on - strand, within AO353_09110 at 2000.160 kb on - strand, within AO353_09110 at 2000.160 kb on - strand, within AO353_09110 at 2000.160 kb on - strand, within AO353_09110 at 2000.160 kb on - strand, within AO353_09110 at 2000.160 kb on - strand, within AO353_09110 at 2000.160 kb on - strand, within AO353_09110 at 2000.160 kb on - strand, within AO353_09110 at 2000.160 kb on - strand, within AO353_09110 at 2000.160 kb on - strand, within AO353_09110 at 2000.266 kb on + strand, within AO353_09110 at 2000.334 kb on - strand, within AO353_09110 at 2000.334 kb on - strand, within AO353_09110 at 2000.346 kb on + strand, within AO353_09110 at 2000.346 kb on + strand, within AO353_09110 at 2000.346 kb on + strand, within AO353_09110 at 2000.346 kb on + strand, within AO353_09110 at 2000.346 kb on + strand, within AO353_09110 at 2000.346 kb on + strand, within AO353_09110 at 2000.346 kb on + strand, within AO353_09110 at 2000.347 kb on - strand, within AO353_09110 at 2000.347 kb on - strand, within AO353_09110 at 2000.347 kb on - strand, within AO353_09110 at 2000.347 kb on - strand, within AO353_09110 at 2000.347 kb on - strand, within AO353_09110 at 2000.378 kb on + strand, within AO353_09110 at 2000.378 kb on + strand, within AO353_09110 at 2000.378 kb on + strand, within AO353_09110 at 2000.378 kb on + strand, within AO353_09110 at 2000.379 kb on - strand, within AO353_09110 at 2000.385 kb on + strand, within AO353_09110 at 2000.437 kb on + strand, within AO353_09110 at 2000.438 kb on - strand, within AO353_09110 at 2000.510 kb on + strand, within AO353_09110 at 2000.510 kb on + strand, within AO353_09110 at 2000.510 kb on + strand, within AO353_09110 at 2000.511 kb on - strand, within AO353_09110 at 2000.511 kb on - strand, within AO353_09110 at 2000.511 kb on - strand, within AO353_09110 at 2000.511 kb on - strand, within AO353_09110 at 2000.675 kb on - strand, within AO353_09110 at 2000.779 kb on + strand, within AO353_09110 at 2000.779 kb on + strand, within AO353_09110 at 2000.780 kb on - strand, within AO353_09110 at 2000.780 kb on - strand, within AO353_09110 at 2000.806 kb on + strand, within AO353_09110 at 2000.806 kb on + strand, within AO353_09110 at 2000.807 kb on - strand, within AO353_09110 at 2000.807 kb on - strand, within AO353_09110 at 2000.807 kb on - strand, within AO353_09110 at 2000.831 kb on + strand, within AO353_09110 at 2000.831 kb on + strand, within AO353_09110 at 2000.832 kb on - strand, within AO353_09110 at 2000.832 kb on - strand, within AO353_09110 at 2001.011 kb on + strand at 2001.011 kb on + strand at 2001.011 kb on + strand at 2001.012 kb on - strand at 2001.012 kb on - strand at 2001.012 kb on - strand at 2001.012 kb on - strand at 2001.039 kb on + strand at 2001.061 kb on + strand at 2001.061 kb on + strand at 2001.061 kb on + strand at 2001.061 kb on + strand at 2001.061 kb on + strand at 2001.061 kb on + strand at 2001.061 kb on + strand at 2001.061 kb on + strand at 2001.062 kb on - strand at 2001.062 kb on - strand at 2001.062 kb on - strand at 2001.062 kb on - strand at 2001.062 kb on - strand at 2001.062 kb on - strand at 2001.062 kb on - strand at 2001.062 kb on - strand at 2001.062 kb on - strand at 2001.062 kb on - strand at 2001.065 kb on + strand at 2001.065 kb on + strand at 2001.065 kb on + strand at 2001.065 kb on + strand at 2001.065 kb on + strand at 2001.065 kb on + strand at 2001.066 kb on - strand at 2001.066 kb on - strand at 2001.066 kb on - strand at 2001.066 kb on - strand at 2001.066 kb on - strand at 2001.066 kb on - strand at 2001.066 kb on - strand at 2001.066 kb on - strand at 2001.066 kb on - strand at 2001.066 kb on - strand at 2001.066 kb on - strand at 2001.066 kb on - strand at 2001.066 kb on - strand at 2001.077 kb on + strand at 2001.077 kb on + strand at 2001.077 kb on + strand at 2001.078 kb on - strand at 2001.078 kb on - strand at 2001.078 kb on - strand at 2001.078 kb on - strand at 2001.078 kb on - strand at 2001.084 kb on + strand at 2001.084 kb on + strand at 2001.084 kb on + strand at 2001.084 kb on + strand at 2001.084 kb on + strand at 2001.085 kb on - strand at 2001.085 kb on - strand at 2001.085 kb on - strand at 2001.085 kb on - strand at 2001.085 kb on - strand at 2001.173 kb on + strand at 2001.173 kb on + strand at 2001.174 kb on - strand at 2001.174 kb on - strand at 2001.174 kb on - strand at 2001.174 kb on - strand at 2001.174 kb on - strand at 2001.216 kb on - strand at 2001.709 kb on + strand, within AO353_09115 at 2001.709 kb on + strand, within AO353_09115 at 2001.842 kb on - strand, within AO353_09115 at 2001.861 kb on - strand, within AO353_09115 at 2001.957 kb on + strand, within AO353_09115 at 2001.957 kb on + strand, within AO353_09115 at 2001.957 kb on + strand, within AO353_09115 at 2001.957 kb on + strand, within AO353_09115 at 2001.957 kb on + strand, within AO353_09115 at 2001.958 kb on - strand, within AO353_09115 at 2001.958 kb on - strand, within AO353_09115 at 2001.958 kb on - strand, within AO353_09115
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.32 mM remove 1,998,667 + AO353_09105 0.12 +0.7 1,998,667 + AO353_09105 0.12 +1.0 1,998,668 - AO353_09105 0.12 -1.6 1,998,668 - AO353_09105 0.12 -0.7 1,998,668 - AO353_09105 0.12 -0.2 1,998,670 + AO353_09105 0.12 -1.3 1,998,670 + AO353_09105 0.12 +1.5 1,998,671 - AO353_09105 0.13 -2.3 1,998,671 - AO353_09105 0.13 -0.9 1,998,671 - AO353_09105 0.13 -0.4 1,998,671 - AO353_09105 0.13 +0.4 1,998,671 - AO353_09105 0.13 -0.6 1,998,671 - AO353_09105 0.13 +1.0 1,998,671 - AO353_09105 0.13 +1.7 1,998,671 - AO353_09105 0.13 -0.2 1,998,806 + AO353_09105 0.27 -0.6 1,998,806 + AO353_09105 0.27 -0.5 1,998,854 + AO353_09105 0.32 +0.1 1,998,854 + AO353_09105 0.32 -0.4 1,998,854 + AO353_09105 0.32 -1.3 1,998,854 + AO353_09105 0.32 -1.6 1,998,854 + AO353_09105 0.32 +0.6 1,998,855 - AO353_09105 0.33 -0.0 1,998,855 - AO353_09105 0.33 -0.1 1,998,855 - AO353_09105 0.33 +0.6 1,998,855 - AO353_09105 0.33 -1.3 1,998,855 - AO353_09105 0.33 +0.0 1,998,855 - AO353_09105 0.33 +0.2 1,998,911 + AO353_09105 0.39 +0.6 1,998,912 - AO353_09105 0.39 -0.3 1,998,994 + AO353_09105 0.48 +0.6 1,998,994 + AO353_09105 0.48 +0.8 1,998,994 + AO353_09105 0.48 +0.2 1,998,995 - AO353_09105 0.48 -2.3 1,998,995 - AO353_09105 0.48 -0.8 1,998,995 - AO353_09105 0.48 -0.3 1,998,995 - AO353_09105 0.48 -1.8 1,998,995 - AO353_09105 0.48 +1.2 1,998,995 - AO353_09105 0.48 -1.7 1,998,995 - AO353_09105 0.48 +0.1 1,998,995 - AO353_09105 0.48 -0.0 1,998,995 - AO353_09105 0.48 -1.0 1,998,995 - AO353_09105 0.48 +1.8 1,999,220 + AO353_09105 0.72 +0.9 1,999,220 + AO353_09105 0.72 +0.2 1,999,220 + AO353_09105 0.72 -0.1 1,999,220 + AO353_09105 0.72 -0.9 1,999,221 - AO353_09105 0.72 -0.6 1,999,221 - AO353_09105 0.72 -0.2 1,999,221 - AO353_09105 0.72 +1.2 1,999,221 - AO353_09105 0.72 +0.1 1,999,221 - AO353_09105 0.72 -0.7 1,999,221 - AO353_09105 0.72 -0.2 1,999,221 - AO353_09105 0.72 -0.2 1,999,221 - AO353_09105 0.72 -0.7 1,999,221 - AO353_09105 0.72 +0.2 1,999,221 - AO353_09105 0.72 +0.2 1,999,221 - AO353_09105 0.72 -0.5 1,999,221 - AO353_09105 0.72 +1.4 1,999,349 + AO353_09105 0.86 -0.8 1,999,350 - AO353_09105 0.86 +0.8 1,999,350 - AO353_09105 0.86 +0.8 1,999,406 + -0.6 1,999,450 + +1.4 1,999,450 + -0.9 1,999,450 + +0.5 1,999,451 - +0.5 1,999,451 - -0.4 1,999,451 - +0.5 1,999,451 - -0.8 1,999,451 - +0.8 1,999,451 - +0.1 1,999,451 - -0.6 1,999,451 - +0.6 1,999,451 - +0.2 1,999,451 - +0.3 1,999,488 + +0.6 1,999,488 + +0.1 1,999,488 + -1.3 1,999,488 + +1.7 1,999,488 + -1.9 1,999,488 + +0.2 1,999,488 + -1.7 1,999,488 + -2.1 1,999,488 + +0.5 1,999,488 + +0.9 1,999,488 + +1.2 1,999,489 - -1.1 1,999,489 - +0.0 1,999,489 - +0.1 1,999,490 + +0.2 1,999,510 - -0.2 1,999,535 + +0.4 1,999,535 + -0.4 1,999,652 - -1.1 1,999,796 + AO353_09110 0.12 -1.1 1,999,796 + AO353_09110 0.12 -1.2 1,999,796 + AO353_09110 0.12 -0.2 1,999,797 - AO353_09110 0.12 -0.1 1,999,797 - AO353_09110 0.12 +0.2 1,999,797 - AO353_09110 0.12 -1.6 1,999,797 - AO353_09110 0.12 +0.2 2,000,083 + AO353_09110 0.32 -0.7 2,000,084 - AO353_09110 0.32 -0.6 2,000,084 - AO353_09110 0.32 +0.1 2,000,159 + AO353_09110 0.38 -0.2 2,000,159 + AO353_09110 0.38 +0.5 2,000,159 + AO353_09110 0.38 +0.0 2,000,159 + AO353_09110 0.38 -1.8 2,000,159 + AO353_09110 0.38 -1.6 2,000,159 + AO353_09110 0.38 -0.5 2,000,159 + AO353_09110 0.38 -0.7 2,000,159 + AO353_09110 0.38 -0.8 2,000,159 + AO353_09110 0.38 -1.4 2,000,160 - AO353_09110 0.38 +0.0 2,000,160 - AO353_09110 0.38 +0.5 2,000,160 - AO353_09110 0.38 -0.4 2,000,160 - AO353_09110 0.38 +0.1 2,000,160 - AO353_09110 0.38 +0.0 2,000,160 - AO353_09110 0.38 -0.2 2,000,160 - AO353_09110 0.38 -1.4 2,000,160 - AO353_09110 0.38 +0.4 2,000,160 - AO353_09110 0.38 -0.9 2,000,160 - AO353_09110 0.38 -1.1 2,000,160 - AO353_09110 0.38 -2.2 2,000,160 - AO353_09110 0.38 +0.3 2,000,266 + AO353_09110 0.45 +0.8 2,000,334 - AO353_09110 0.50 -0.0 2,000,334 - AO353_09110 0.50 -0.5 2,000,346 + AO353_09110 0.51 -1.3 2,000,346 + AO353_09110 0.51 -0.1 2,000,346 + AO353_09110 0.51 +0.1 2,000,346 + AO353_09110 0.51 +0.6 2,000,346 + AO353_09110 0.51 -1.5 2,000,346 + AO353_09110 0.51 -1.5 2,000,346 + AO353_09110 0.51 -1.3 2,000,347 - AO353_09110 0.51 +0.3 2,000,347 - AO353_09110 0.51 -0.7 2,000,347 - AO353_09110 0.51 -1.3 2,000,347 - AO353_09110 0.51 -0.9 2,000,347 - AO353_09110 0.51 -1.1 2,000,378 + AO353_09110 0.53 -1.7 2,000,378 + AO353_09110 0.53 +0.8 2,000,378 + AO353_09110 0.53 -1.0 2,000,378 + AO353_09110 0.53 -1.1 2,000,379 - AO353_09110 0.53 -0.2 2,000,385 + AO353_09110 0.54 -0.3 2,000,437 + AO353_09110 0.57 -0.2 2,000,438 - AO353_09110 0.58 +0.7 2,000,510 + AO353_09110 0.63 -1.9 2,000,510 + AO353_09110 0.63 -1.7 2,000,510 + AO353_09110 0.63 +0.9 2,000,511 - AO353_09110 0.63 +0.4 2,000,511 - AO353_09110 0.63 +0.2 2,000,511 - AO353_09110 0.63 -1.1 2,000,511 - AO353_09110 0.63 +0.8 2,000,675 - AO353_09110 0.74 +0.8 2,000,779 + AO353_09110 0.82 -1.2 2,000,779 + AO353_09110 0.82 -0.1 2,000,780 - AO353_09110 0.82 -0.6 2,000,780 - AO353_09110 0.82 +0.5 2,000,806 + AO353_09110 0.84 -0.8 2,000,806 + AO353_09110 0.84 -0.3 2,000,807 - AO353_09110 0.84 +0.1 2,000,807 - AO353_09110 0.84 -0.1 2,000,807 - AO353_09110 0.84 -1.4 2,000,831 + AO353_09110 0.86 -0.7 2,000,831 + AO353_09110 0.86 -2.4 2,000,832 - AO353_09110 0.86 +0.1 2,000,832 - AO353_09110 0.86 -1.3 2,001,011 + +0.5 2,001,011 + +0.8 2,001,011 + +0.1 2,001,012 - -0.6 2,001,012 - -0.4 2,001,012 - -0.5 2,001,012 - +0.6 2,001,039 + -1.9 2,001,061 + +0.4 2,001,061 + +0.8 2,001,061 + +1.2 2,001,061 + +1.0 2,001,061 + +0.7 2,001,061 + +1.4 2,001,061 + -0.4 2,001,061 + -0.8 2,001,062 - +0.6 2,001,062 - -0.3 2,001,062 - -1.1 2,001,062 - -1.8 2,001,062 - +0.4 2,001,062 - +0.6 2,001,062 - +0.5 2,001,062 - +0.5 2,001,062 - +0.9 2,001,062 - -0.3 2,001,065 + -0.5 2,001,065 + -1.5 2,001,065 + -0.4 2,001,065 + +0.6 2,001,065 + -1.4 2,001,065 + -0.2 2,001,066 - +0.1 2,001,066 - -0.4 2,001,066 - +1.6 2,001,066 - -2.3 2,001,066 - +0.4 2,001,066 - +0.2 2,001,066 - -1.1 2,001,066 - +0.6 2,001,066 - +0.2 2,001,066 - -1.1 2,001,066 - +1.2 2,001,066 - -0.2 2,001,066 - +1.8 2,001,077 + -1.2 2,001,077 + +0.6 2,001,077 + +0.5 2,001,078 - -0.6 2,001,078 - -0.9 2,001,078 - +0.6 2,001,078 - -1.2 2,001,078 - -1.3 2,001,084 + +0.8 2,001,084 + -1.0 2,001,084 + -1.1 2,001,084 + +0.2 2,001,084 + -0.7 2,001,085 - -0.7 2,001,085 - -0.6 2,001,085 - +0.0 2,001,085 - +1.8 2,001,085 - +0.2 2,001,173 + +0.0 2,001,173 + -0.6 2,001,174 - -0.9 2,001,174 - +0.1 2,001,174 - -0.6 2,001,174 - +0.6 2,001,174 - -0.6 2,001,216 - +0.3 2,001,709 + AO353_09115 0.35 +0.2 2,001,709 + AO353_09115 0.35 +0.6 2,001,842 - AO353_09115 0.43 +0.2 2,001,861 - AO353_09115 0.44 -0.6 2,001,957 + AO353_09115 0.49 +0.9 2,001,957 + AO353_09115 0.49 +0.2 2,001,957 + AO353_09115 0.49 +0.4 2,001,957 + AO353_09115 0.49 -1.1 2,001,957 + AO353_09115 0.49 -0.4 2,001,958 - AO353_09115 0.50 +0.4 2,001,958 - AO353_09115 0.50 +1.0 2,001,958 - AO353_09115 0.50 +1.5
Or see this region's nucleotide sequence