Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_09110

Experiment: Cobalt chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_09105 and AO353_09110 are separated by 152 nucleotidesAO353_09110 and AO353_09115 are separated by 98 nucleotides AO353_09105: AO353_09105 - LysR family transcriptional regulator, at 1,998,555 to 1,999,475 _09105 AO353_09110: AO353_09110 - MATE family efflux transporter, at 1,999,628 to 2,001,034 _09110 AO353_09115: AO353_09115 - diguanylate cyclase, at 2,001,133 to 2,002,797 _09115 Position (kb) 1999 2000 2001 2002Strain fitness (log2 ratio) -2 -1 0 1 2at 1998.667 kb on + strand, within AO353_09105at 1998.667 kb on + strand, within AO353_09105at 1998.668 kb on - strand, within AO353_09105at 1998.668 kb on - strand, within AO353_09105at 1998.668 kb on - strand, within AO353_09105at 1998.670 kb on + strand, within AO353_09105at 1998.670 kb on + strand, within AO353_09105at 1998.671 kb on - strand, within AO353_09105at 1998.671 kb on - strand, within AO353_09105at 1998.671 kb on - strand, within AO353_09105at 1998.671 kb on - strand, within AO353_09105at 1998.671 kb on - strand, within AO353_09105at 1998.671 kb on - strand, within AO353_09105at 1998.671 kb on - strand, within AO353_09105at 1998.671 kb on - strand, within AO353_09105at 1998.806 kb on + strand, within AO353_09105at 1998.806 kb on + strand, within AO353_09105at 1998.854 kb on + strand, within AO353_09105at 1998.854 kb on + strand, within AO353_09105at 1998.854 kb on + strand, within AO353_09105at 1998.854 kb on + strand, within AO353_09105at 1998.854 kb on + strand, within AO353_09105at 1998.855 kb on - strand, within AO353_09105at 1998.855 kb on - strand, within AO353_09105at 1998.855 kb on - strand, within AO353_09105at 1998.855 kb on - strand, within AO353_09105at 1998.855 kb on - strand, within AO353_09105at 1998.855 kb on - strand, within AO353_09105at 1998.911 kb on + strand, within AO353_09105at 1998.912 kb on - strand, within AO353_09105at 1998.994 kb on + strand, within AO353_09105at 1998.994 kb on + strand, within AO353_09105at 1998.994 kb on + strand, within AO353_09105at 1998.995 kb on - strand, within AO353_09105at 1998.995 kb on - strand, within AO353_09105at 1998.995 kb on - strand, within AO353_09105at 1998.995 kb on - strand, within AO353_09105at 1998.995 kb on - strand, within AO353_09105at 1998.995 kb on - strand, within AO353_09105at 1998.995 kb on - strand, within AO353_09105at 1998.995 kb on - strand, within AO353_09105at 1998.995 kb on - strand, within AO353_09105at 1998.995 kb on - strand, within AO353_09105at 1999.220 kb on + strand, within AO353_09105at 1999.220 kb on + strand, within AO353_09105at 1999.220 kb on + strand, within AO353_09105at 1999.220 kb on + strand, within AO353_09105at 1999.221 kb on - strand, within AO353_09105at 1999.221 kb on - strand, within AO353_09105at 1999.221 kb on - strand, within AO353_09105at 1999.221 kb on - strand, within AO353_09105at 1999.221 kb on - strand, within AO353_09105at 1999.221 kb on - strand, within AO353_09105at 1999.221 kb on - strand, within AO353_09105at 1999.221 kb on - strand, within AO353_09105at 1999.221 kb on - strand, within AO353_09105at 1999.221 kb on - strand, within AO353_09105at 1999.221 kb on - strand, within AO353_09105at 1999.221 kb on - strand, within AO353_09105at 1999.349 kb on + strand, within AO353_09105at 1999.350 kb on - strand, within AO353_09105at 1999.350 kb on - strand, within AO353_09105at 1999.406 kb on + strandat 1999.450 kb on + strandat 1999.450 kb on + strandat 1999.450 kb on + strandat 1999.451 kb on - strandat 1999.451 kb on - strandat 1999.451 kb on - strandat 1999.451 kb on - strandat 1999.451 kb on - strandat 1999.451 kb on - strandat 1999.451 kb on - strandat 1999.451 kb on - strandat 1999.451 kb on - strandat 1999.451 kb on - strandat 1999.488 kb on + strandat 1999.488 kb on + strandat 1999.488 kb on + strandat 1999.488 kb on + strandat 1999.488 kb on + strandat 1999.488 kb on + strandat 1999.488 kb on + strandat 1999.488 kb on + strandat 1999.488 kb on + strandat 1999.488 kb on + strandat 1999.488 kb on + strandat 1999.489 kb on - strandat 1999.489 kb on - strandat 1999.489 kb on - strandat 1999.490 kb on + strandat 1999.510 kb on - strandat 1999.535 kb on + strandat 1999.535 kb on + strandat 1999.652 kb on - strandat 1999.796 kb on + strand, within AO353_09110at 1999.796 kb on + strand, within AO353_09110at 1999.796 kb on + strand, within AO353_09110at 1999.797 kb on - strand, within AO353_09110at 1999.797 kb on - strand, within AO353_09110at 1999.797 kb on - strand, within AO353_09110at 1999.797 kb on - strand, within AO353_09110at 2000.083 kb on + strand, within AO353_09110at 2000.084 kb on - strand, within AO353_09110at 2000.084 kb on - strand, within AO353_09110at 2000.159 kb on + strand, within AO353_09110at 2000.159 kb on + strand, within AO353_09110at 2000.159 kb on + strand, within AO353_09110at 2000.159 kb on + strand, within AO353_09110at 2000.159 kb on + strand, within AO353_09110at 2000.159 kb on + strand, within AO353_09110at 2000.159 kb on + strand, within AO353_09110at 2000.159 kb on + strand, within AO353_09110at 2000.159 kb on + strand, within AO353_09110at 2000.160 kb on - strand, within AO353_09110at 2000.160 kb on - strand, within AO353_09110at 2000.160 kb on - strand, within AO353_09110at 2000.160 kb on - strand, within AO353_09110at 2000.160 kb on - strand, within AO353_09110at 2000.160 kb on - strand, within AO353_09110at 2000.160 kb on - strand, within AO353_09110at 2000.160 kb on - strand, within AO353_09110at 2000.160 kb on - strand, within AO353_09110at 2000.160 kb on - strand, within AO353_09110at 2000.160 kb on - strand, within AO353_09110at 2000.160 kb on - strand, within AO353_09110at 2000.266 kb on + strand, within AO353_09110at 2000.334 kb on - strand, within AO353_09110at 2000.334 kb on - strand, within AO353_09110at 2000.346 kb on + strand, within AO353_09110at 2000.346 kb on + strand, within AO353_09110at 2000.346 kb on + strand, within AO353_09110at 2000.346 kb on + strand, within AO353_09110at 2000.346 kb on + strand, within AO353_09110at 2000.346 kb on + strand, within AO353_09110at 2000.346 kb on + strand, within AO353_09110at 2000.347 kb on - strand, within AO353_09110at 2000.347 kb on - strand, within AO353_09110at 2000.347 kb on - strand, within AO353_09110at 2000.347 kb on - strand, within AO353_09110at 2000.347 kb on - strand, within AO353_09110at 2000.378 kb on + strand, within AO353_09110at 2000.378 kb on + strand, within AO353_09110at 2000.378 kb on + strand, within AO353_09110at 2000.378 kb on + strand, within AO353_09110at 2000.379 kb on - strand, within AO353_09110at 2000.385 kb on + strand, within AO353_09110at 2000.437 kb on + strand, within AO353_09110at 2000.438 kb on - strand, within AO353_09110at 2000.510 kb on + strand, within AO353_09110at 2000.510 kb on + strand, within AO353_09110at 2000.510 kb on + strand, within AO353_09110at 2000.511 kb on - strand, within AO353_09110at 2000.511 kb on - strand, within AO353_09110at 2000.511 kb on - strand, within AO353_09110at 2000.511 kb on - strand, within AO353_09110at 2000.675 kb on - strand, within AO353_09110at 2000.779 kb on + strand, within AO353_09110at 2000.779 kb on + strand, within AO353_09110at 2000.780 kb on - strand, within AO353_09110at 2000.780 kb on - strand, within AO353_09110at 2000.806 kb on + strand, within AO353_09110at 2000.806 kb on + strand, within AO353_09110at 2000.807 kb on - strand, within AO353_09110at 2000.807 kb on - strand, within AO353_09110at 2000.807 kb on - strand, within AO353_09110at 2000.831 kb on + strand, within AO353_09110at 2000.831 kb on + strand, within AO353_09110at 2000.832 kb on - strand, within AO353_09110at 2000.832 kb on - strand, within AO353_09110at 2001.011 kb on + strandat 2001.011 kb on + strandat 2001.011 kb on + strandat 2001.012 kb on - strandat 2001.012 kb on - strandat 2001.012 kb on - strandat 2001.012 kb on - strandat 2001.039 kb on + strandat 2001.061 kb on + strandat 2001.061 kb on + strandat 2001.061 kb on + strandat 2001.061 kb on + strandat 2001.061 kb on + strandat 2001.061 kb on + strandat 2001.061 kb on + strandat 2001.061 kb on + strandat 2001.062 kb on - strandat 2001.062 kb on - strandat 2001.062 kb on - strandat 2001.062 kb on - strandat 2001.062 kb on - strandat 2001.062 kb on - strandat 2001.062 kb on - strandat 2001.062 kb on - strandat 2001.062 kb on - strandat 2001.062 kb on - strandat 2001.065 kb on + strandat 2001.065 kb on + strandat 2001.065 kb on + strandat 2001.065 kb on + strandat 2001.065 kb on + strandat 2001.065 kb on + strandat 2001.066 kb on - strandat 2001.066 kb on - strandat 2001.066 kb on - strandat 2001.066 kb on - strandat 2001.066 kb on - strandat 2001.066 kb on - strandat 2001.066 kb on - strandat 2001.066 kb on - strandat 2001.066 kb on - strandat 2001.066 kb on - strandat 2001.066 kb on - strandat 2001.066 kb on - strandat 2001.066 kb on - strandat 2001.077 kb on + strandat 2001.077 kb on + strandat 2001.077 kb on + strandat 2001.078 kb on - strandat 2001.078 kb on - strandat 2001.078 kb on - strandat 2001.078 kb on - strandat 2001.078 kb on - strandat 2001.084 kb on + strandat 2001.084 kb on + strandat 2001.084 kb on + strandat 2001.084 kb on + strandat 2001.084 kb on + strandat 2001.085 kb on - strandat 2001.085 kb on - strandat 2001.085 kb on - strandat 2001.085 kb on - strandat 2001.085 kb on - strandat 2001.173 kb on + strandat 2001.173 kb on + strandat 2001.174 kb on - strandat 2001.174 kb on - strandat 2001.174 kb on - strandat 2001.174 kb on - strandat 2001.174 kb on - strandat 2001.216 kb on - strandat 2001.709 kb on + strand, within AO353_09115at 2001.709 kb on + strand, within AO353_09115at 2001.842 kb on - strand, within AO353_09115at 2001.861 kb on - strand, within AO353_09115at 2001.957 kb on + strand, within AO353_09115at 2001.957 kb on + strand, within AO353_09115at 2001.957 kb on + strand, within AO353_09115at 2001.957 kb on + strand, within AO353_09115at 2001.957 kb on + strand, within AO353_09115at 2001.958 kb on - strand, within AO353_09115at 2001.958 kb on - strand, within AO353_09115at 2001.958 kb on - strand, within AO353_09115

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.32 mM
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1,998,667 + AO353_09105 0.12 +0.7
1,998,667 + AO353_09105 0.12 +1.0
1,998,668 - AO353_09105 0.12 -1.6
1,998,668 - AO353_09105 0.12 -0.7
1,998,668 - AO353_09105 0.12 -0.2
1,998,670 + AO353_09105 0.12 -1.3
1,998,670 + AO353_09105 0.12 +1.5
1,998,671 - AO353_09105 0.13 -2.3
1,998,671 - AO353_09105 0.13 -0.9
1,998,671 - AO353_09105 0.13 -0.4
1,998,671 - AO353_09105 0.13 +0.4
1,998,671 - AO353_09105 0.13 -0.6
1,998,671 - AO353_09105 0.13 +1.0
1,998,671 - AO353_09105 0.13 +1.7
1,998,671 - AO353_09105 0.13 -0.2
1,998,806 + AO353_09105 0.27 -0.6
1,998,806 + AO353_09105 0.27 -0.5
1,998,854 + AO353_09105 0.32 +0.1
1,998,854 + AO353_09105 0.32 -0.4
1,998,854 + AO353_09105 0.32 -1.3
1,998,854 + AO353_09105 0.32 -1.6
1,998,854 + AO353_09105 0.32 +0.6
1,998,855 - AO353_09105 0.33 -0.0
1,998,855 - AO353_09105 0.33 -0.1
1,998,855 - AO353_09105 0.33 +0.6
1,998,855 - AO353_09105 0.33 -1.3
1,998,855 - AO353_09105 0.33 +0.0
1,998,855 - AO353_09105 0.33 +0.2
1,998,911 + AO353_09105 0.39 +0.6
1,998,912 - AO353_09105 0.39 -0.3
1,998,994 + AO353_09105 0.48 +0.6
1,998,994 + AO353_09105 0.48 +0.8
1,998,994 + AO353_09105 0.48 +0.2
1,998,995 - AO353_09105 0.48 -2.3
1,998,995 - AO353_09105 0.48 -0.8
1,998,995 - AO353_09105 0.48 -0.3
1,998,995 - AO353_09105 0.48 -1.8
1,998,995 - AO353_09105 0.48 +1.2
1,998,995 - AO353_09105 0.48 -1.7
1,998,995 - AO353_09105 0.48 +0.1
1,998,995 - AO353_09105 0.48 -0.0
1,998,995 - AO353_09105 0.48 -1.0
1,998,995 - AO353_09105 0.48 +1.8
1,999,220 + AO353_09105 0.72 +0.9
1,999,220 + AO353_09105 0.72 +0.2
1,999,220 + AO353_09105 0.72 -0.1
1,999,220 + AO353_09105 0.72 -0.9
1,999,221 - AO353_09105 0.72 -0.6
1,999,221 - AO353_09105 0.72 -0.2
1,999,221 - AO353_09105 0.72 +1.2
1,999,221 - AO353_09105 0.72 +0.1
1,999,221 - AO353_09105 0.72 -0.7
1,999,221 - AO353_09105 0.72 -0.2
1,999,221 - AO353_09105 0.72 -0.2
1,999,221 - AO353_09105 0.72 -0.7
1,999,221 - AO353_09105 0.72 +0.2
1,999,221 - AO353_09105 0.72 +0.2
1,999,221 - AO353_09105 0.72 -0.5
1,999,221 - AO353_09105 0.72 +1.4
1,999,349 + AO353_09105 0.86 -0.8
1,999,350 - AO353_09105 0.86 +0.8
1,999,350 - AO353_09105 0.86 +0.8
1,999,406 + -0.6
1,999,450 + +1.4
1,999,450 + -0.9
1,999,450 + +0.5
1,999,451 - +0.5
1,999,451 - -0.4
1,999,451 - +0.5
1,999,451 - -0.8
1,999,451 - +0.8
1,999,451 - +0.1
1,999,451 - -0.6
1,999,451 - +0.6
1,999,451 - +0.2
1,999,451 - +0.3
1,999,488 + +0.6
1,999,488 + +0.1
1,999,488 + -1.3
1,999,488 + +1.7
1,999,488 + -1.9
1,999,488 + +0.2
1,999,488 + -1.7
1,999,488 + -2.1
1,999,488 + +0.5
1,999,488 + +0.9
1,999,488 + +1.2
1,999,489 - -1.1
1,999,489 - +0.0
1,999,489 - +0.1
1,999,490 + +0.2
1,999,510 - -0.2
1,999,535 + +0.4
1,999,535 + -0.4
1,999,652 - -1.1
1,999,796 + AO353_09110 0.12 -1.1
1,999,796 + AO353_09110 0.12 -1.2
1,999,796 + AO353_09110 0.12 -0.2
1,999,797 - AO353_09110 0.12 -0.1
1,999,797 - AO353_09110 0.12 +0.2
1,999,797 - AO353_09110 0.12 -1.6
1,999,797 - AO353_09110 0.12 +0.2
2,000,083 + AO353_09110 0.32 -0.7
2,000,084 - AO353_09110 0.32 -0.6
2,000,084 - AO353_09110 0.32 +0.1
2,000,159 + AO353_09110 0.38 -0.2
2,000,159 + AO353_09110 0.38 +0.5
2,000,159 + AO353_09110 0.38 +0.0
2,000,159 + AO353_09110 0.38 -1.8
2,000,159 + AO353_09110 0.38 -1.6
2,000,159 + AO353_09110 0.38 -0.5
2,000,159 + AO353_09110 0.38 -0.7
2,000,159 + AO353_09110 0.38 -0.8
2,000,159 + AO353_09110 0.38 -1.4
2,000,160 - AO353_09110 0.38 +0.0
2,000,160 - AO353_09110 0.38 +0.5
2,000,160 - AO353_09110 0.38 -0.4
2,000,160 - AO353_09110 0.38 +0.1
2,000,160 - AO353_09110 0.38 +0.0
2,000,160 - AO353_09110 0.38 -0.2
2,000,160 - AO353_09110 0.38 -1.4
2,000,160 - AO353_09110 0.38 +0.4
2,000,160 - AO353_09110 0.38 -0.9
2,000,160 - AO353_09110 0.38 -1.1
2,000,160 - AO353_09110 0.38 -2.2
2,000,160 - AO353_09110 0.38 +0.3
2,000,266 + AO353_09110 0.45 +0.8
2,000,334 - AO353_09110 0.50 -0.0
2,000,334 - AO353_09110 0.50 -0.5
2,000,346 + AO353_09110 0.51 -1.3
2,000,346 + AO353_09110 0.51 -0.1
2,000,346 + AO353_09110 0.51 +0.1
2,000,346 + AO353_09110 0.51 +0.6
2,000,346 + AO353_09110 0.51 -1.5
2,000,346 + AO353_09110 0.51 -1.5
2,000,346 + AO353_09110 0.51 -1.3
2,000,347 - AO353_09110 0.51 +0.3
2,000,347 - AO353_09110 0.51 -0.7
2,000,347 - AO353_09110 0.51 -1.3
2,000,347 - AO353_09110 0.51 -0.9
2,000,347 - AO353_09110 0.51 -1.1
2,000,378 + AO353_09110 0.53 -1.7
2,000,378 + AO353_09110 0.53 +0.8
2,000,378 + AO353_09110 0.53 -1.0
2,000,378 + AO353_09110 0.53 -1.1
2,000,379 - AO353_09110 0.53 -0.2
2,000,385 + AO353_09110 0.54 -0.3
2,000,437 + AO353_09110 0.57 -0.2
2,000,438 - AO353_09110 0.58 +0.7
2,000,510 + AO353_09110 0.63 -1.9
2,000,510 + AO353_09110 0.63 -1.7
2,000,510 + AO353_09110 0.63 +0.9
2,000,511 - AO353_09110 0.63 +0.4
2,000,511 - AO353_09110 0.63 +0.2
2,000,511 - AO353_09110 0.63 -1.1
2,000,511 - AO353_09110 0.63 +0.8
2,000,675 - AO353_09110 0.74 +0.8
2,000,779 + AO353_09110 0.82 -1.2
2,000,779 + AO353_09110 0.82 -0.1
2,000,780 - AO353_09110 0.82 -0.6
2,000,780 - AO353_09110 0.82 +0.5
2,000,806 + AO353_09110 0.84 -0.8
2,000,806 + AO353_09110 0.84 -0.3
2,000,807 - AO353_09110 0.84 +0.1
2,000,807 - AO353_09110 0.84 -0.1
2,000,807 - AO353_09110 0.84 -1.4
2,000,831 + AO353_09110 0.86 -0.7
2,000,831 + AO353_09110 0.86 -2.4
2,000,832 - AO353_09110 0.86 +0.1
2,000,832 - AO353_09110 0.86 -1.3
2,001,011 + +0.5
2,001,011 + +0.8
2,001,011 + +0.1
2,001,012 - -0.6
2,001,012 - -0.4
2,001,012 - -0.5
2,001,012 - +0.6
2,001,039 + -1.9
2,001,061 + +0.4
2,001,061 + +0.8
2,001,061 + +1.2
2,001,061 + +1.0
2,001,061 + +0.7
2,001,061 + +1.4
2,001,061 + -0.4
2,001,061 + -0.8
2,001,062 - +0.6
2,001,062 - -0.3
2,001,062 - -1.1
2,001,062 - -1.8
2,001,062 - +0.4
2,001,062 - +0.6
2,001,062 - +0.5
2,001,062 - +0.5
2,001,062 - +0.9
2,001,062 - -0.3
2,001,065 + -0.5
2,001,065 + -1.5
2,001,065 + -0.4
2,001,065 + +0.6
2,001,065 + -1.4
2,001,065 + -0.2
2,001,066 - +0.1
2,001,066 - -0.4
2,001,066 - +1.6
2,001,066 - -2.3
2,001,066 - +0.4
2,001,066 - +0.2
2,001,066 - -1.1
2,001,066 - +0.6
2,001,066 - +0.2
2,001,066 - -1.1
2,001,066 - +1.2
2,001,066 - -0.2
2,001,066 - +1.8
2,001,077 + -1.2
2,001,077 + +0.6
2,001,077 + +0.5
2,001,078 - -0.6
2,001,078 - -0.9
2,001,078 - +0.6
2,001,078 - -1.2
2,001,078 - -1.3
2,001,084 + +0.8
2,001,084 + -1.0
2,001,084 + -1.1
2,001,084 + +0.2
2,001,084 + -0.7
2,001,085 - -0.7
2,001,085 - -0.6
2,001,085 - +0.0
2,001,085 - +1.8
2,001,085 - +0.2
2,001,173 + +0.0
2,001,173 + -0.6
2,001,174 - -0.9
2,001,174 - +0.1
2,001,174 - -0.6
2,001,174 - +0.6
2,001,174 - -0.6
2,001,216 - +0.3
2,001,709 + AO353_09115 0.35 +0.2
2,001,709 + AO353_09115 0.35 +0.6
2,001,842 - AO353_09115 0.43 +0.2
2,001,861 - AO353_09115 0.44 -0.6
2,001,957 + AO353_09115 0.49 +0.9
2,001,957 + AO353_09115 0.49 +0.2
2,001,957 + AO353_09115 0.49 +0.4
2,001,957 + AO353_09115 0.49 -1.1
2,001,957 + AO353_09115 0.49 -0.4
2,001,958 - AO353_09115 0.50 +0.4
2,001,958 - AO353_09115 0.50 +1.0
2,001,958 - AO353_09115 0.50 +1.5

Or see this region's nucleotide sequence