Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_08910

Experiment: Cobalt chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_08900 and AO353_08905 are separated by 115 nucleotidesAO353_08905 and AO353_08910 are separated by 41 nucleotidesAO353_08910 and AO353_08915 are separated by 133 nucleotides AO353_08900: AO353_08900 - hypothetical protein, at 1,955,832 to 1,957,067 _08900 AO353_08905: AO353_08905 - isoprenoid biosynthesis protein, at 1,957,183 to 1,957,848 _08905 AO353_08910: AO353_08910 - hypothetical protein, at 1,957,890 to 1,958,345 _08910 AO353_08915: AO353_08915 - cystathionine gamma-synthase, at 1,958,479 to 1,960,377 _08915 Position (kb) 1957 1958 1959Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1956.890 kb on - strand, within AO353_08900at 1956.890 kb on - strand, within AO353_08900at 1956.979 kb on + strandat 1956.980 kb on - strandat 1956.983 kb on + strandat 1956.983 kb on + strandat 1956.983 kb on + strandat 1956.983 kb on + strandat 1956.983 kb on + strandat 1956.983 kb on + strandat 1956.983 kb on + strandat 1956.983 kb on + strandat 1956.984 kb on - strandat 1956.984 kb on - strandat 1956.984 kb on - strandat 1956.984 kb on - strandat 1956.984 kb on - strandat 1956.984 kb on - strandat 1956.984 kb on - strandat 1956.984 kb on - strandat 1956.984 kb on - strandat 1957.051 kb on + strandat 1957.052 kb on - strandat 1957.052 kb on - strandat 1957.102 kb on + strandat 1957.102 kb on + strandat 1957.102 kb on + strandat 1957.102 kb on + strandat 1957.102 kb on + strandat 1957.102 kb on + strandat 1957.102 kb on + strandat 1957.102 kb on + strandat 1957.103 kb on - strandat 1957.103 kb on - strandat 1957.103 kb on - strandat 1957.103 kb on - strandat 1957.103 kb on - strandat 1957.103 kb on - strandat 1957.103 kb on - strandat 1957.103 kb on - strandat 1957.103 kb on - strandat 1957.103 kb on - strandat 1957.119 kb on + strandat 1957.119 kb on + strandat 1957.119 kb on + strandat 1957.119 kb on + strandat 1957.119 kb on + strandat 1957.119 kb on + strandat 1957.119 kb on + strandat 1957.120 kb on - strandat 1957.120 kb on - strandat 1957.120 kb on - strandat 1957.120 kb on - strandat 1957.120 kb on - strandat 1957.120 kb on - strandat 1957.120 kb on - strandat 1957.120 kb on - strandat 1957.125 kb on + strandat 1957.125 kb on + strandat 1957.145 kb on + strandat 1957.145 kb on + strandat 1957.146 kb on - strandat 1957.146 kb on - strandat 1957.146 kb on - strandat 1957.146 kb on - strandat 1957.156 kb on + strandat 1957.156 kb on + strandat 1957.156 kb on + strandat 1957.157 kb on - strandat 1957.157 kb on - strandat 1957.157 kb on - strandat 1957.157 kb on - strandat 1957.205 kb on + strandat 1957.205 kb on + strandat 1957.205 kb on + strandat 1957.205 kb on + strandat 1957.205 kb on + strandat 1957.206 kb on - strandat 1957.206 kb on - strandat 1957.206 kb on - strandat 1957.206 kb on - strandat 1957.206 kb on - strandat 1957.225 kb on + strandat 1957.225 kb on + strandat 1957.225 kb on + strandat 1957.225 kb on + strandat 1957.226 kb on - strandat 1957.226 kb on - strandat 1957.759 kb on + strand, within AO353_08905at 1957.759 kb on + strand, within AO353_08905at 1957.759 kb on + strand, within AO353_08905at 1957.759 kb on + strand, within AO353_08905at 1957.759 kb on + strand, within AO353_08905at 1957.759 kb on + strand, within AO353_08905at 1957.759 kb on + strand, within AO353_08905at 1957.759 kb on + strand, within AO353_08905at 1957.759 kb on + strand, within AO353_08905at 1957.759 kb on + strand, within AO353_08905at 1957.759 kb on + strand, within AO353_08905at 1957.759 kb on + strand, within AO353_08905at 1957.760 kb on - strand, within AO353_08905at 1957.760 kb on - strand, within AO353_08905at 1957.760 kb on - strand, within AO353_08905at 1957.760 kb on - strand, within AO353_08905at 1957.760 kb on - strand, within AO353_08905at 1957.760 kb on - strand, within AO353_08905at 1957.760 kb on - strand, within AO353_08905at 1957.760 kb on - strand, within AO353_08905at 1957.760 kb on - strand, within AO353_08905at 1957.760 kb on - strand, within AO353_08905at 1957.760 kb on - strand, within AO353_08905at 1957.761 kb on + strand, within AO353_08905at 1957.761 kb on + strand, within AO353_08905at 1957.761 kb on + strand, within AO353_08905at 1957.761 kb on + strand, within AO353_08905at 1957.761 kb on + strand, within AO353_08905at 1957.761 kb on + strand, within AO353_08905at 1957.761 kb on + strand, within AO353_08905at 1957.761 kb on + strand, within AO353_08905at 1957.761 kb on + strand, within AO353_08905at 1957.762 kb on - strand, within AO353_08905at 1957.762 kb on - strand, within AO353_08905at 1957.762 kb on - strand, within AO353_08905at 1957.762 kb on - strand, within AO353_08905at 1957.762 kb on - strand, within AO353_08905at 1957.762 kb on - strand, within AO353_08905at 1957.762 kb on - strand, within AO353_08905at 1957.762 kb on - strand, within AO353_08905at 1957.762 kb on - strand, within AO353_08905at 1957.803 kb on + strandat 1957.803 kb on + strandat 1957.803 kb on + strandat 1957.803 kb on + strandat 1957.803 kb on + strandat 1957.804 kb on - strandat 1957.804 kb on - strandat 1957.804 kb on - strandat 1957.804 kb on - strandat 1957.804 kb on - strandat 1957.804 kb on - strandat 1957.804 kb on - strandat 1957.804 kb on - strandat 1957.846 kb on + strandat 1957.847 kb on - strandat 1958.019 kb on - strand, within AO353_08910at 1958.167 kb on + strand, within AO353_08910at 1958.168 kb on - strand, within AO353_08910at 1958.168 kb on - strand, within AO353_08910at 1958.352 kb on + strandat 1958.352 kb on + strandat 1958.353 kb on - strandat 1958.353 kb on - strandat 1958.353 kb on - strandat 1958.353 kb on - strandat 1958.389 kb on + strandat 1958.436 kb on + strandat 1958.436 kb on + strandat 1958.475 kb on - strandat 1958.480 kb on + strandat 1958.523 kb on + strandat 1958.523 kb on + strandat 1958.524 kb on - strandat 1958.524 kb on - strandat 1958.525 kb on + strandat 1958.525 kb on + strandat 1958.525 kb on + strandat 1958.525 kb on + strandat 1958.525 kb on + strandat 1958.525 kb on + strandat 1958.525 kb on + strandat 1958.525 kb on + strandat 1958.525 kb on + strandat 1958.525 kb on + strandat 1958.525 kb on + strandat 1958.525 kb on + strandat 1958.525 kb on + strandat 1958.525 kb on + strandat 1958.525 kb on + strandat 1958.525 kb on + strandat 1958.525 kb on + strandat 1958.525 kb on + strandat 1958.526 kb on - strandat 1958.526 kb on - strandat 1958.526 kb on - strandat 1958.526 kb on - strandat 1958.526 kb on - strandat 1958.526 kb on - strandat 1958.526 kb on - strandat 1958.526 kb on - strandat 1958.526 kb on - strandat 1958.526 kb on - strandat 1958.526 kb on - strandat 1958.526 kb on - strandat 1958.526 kb on - strandat 1958.526 kb on - strandat 1958.526 kb on - strandat 1958.573 kb on + strandat 1958.817 kb on + strand, within AO353_08915at 1958.856 kb on - strand, within AO353_08915at 1958.954 kb on + strand, within AO353_08915at 1958.954 kb on + strand, within AO353_08915at 1958.954 kb on + strand, within AO353_08915at 1958.954 kb on + strand, within AO353_08915at 1958.954 kb on + strand, within AO353_08915at 1958.954 kb on + strand, within AO353_08915at 1958.955 kb on - strand, within AO353_08915at 1958.955 kb on - strand, within AO353_08915at 1958.955 kb on - strand, within AO353_08915at 1958.955 kb on - strand, within AO353_08915at 1959.083 kb on + strand, within AO353_08915at 1959.084 kb on - strand, within AO353_08915at 1959.084 kb on - strand, within AO353_08915at 1959.084 kb on - strand, within AO353_08915at 1959.084 kb on - strand, within AO353_08915at 1959.084 kb on - strand, within AO353_08915at 1959.084 kb on - strand, within AO353_08915at 1959.254 kb on + strand, within AO353_08915at 1959.254 kb on + strand, within AO353_08915at 1959.254 kb on + strand, within AO353_08915at 1959.254 kb on + strand, within AO353_08915at 1959.254 kb on + strand, within AO353_08915at 1959.254 kb on + strand, within AO353_08915at 1959.254 kb on + strand, within AO353_08915at 1959.254 kb on + strand, within AO353_08915at 1959.254 kb on + strand, within AO353_08915at 1959.254 kb on + strand, within AO353_08915at 1959.254 kb on + strand, within AO353_08915at 1959.254 kb on + strand, within AO353_08915at 1959.254 kb on + strand, within AO353_08915at 1959.254 kb on + strand, within AO353_08915at 1959.254 kb on + strand, within AO353_08915at 1959.254 kb on + strand, within AO353_08915at 1959.254 kb on + strand, within AO353_08915at 1959.254 kb on + strand, within AO353_08915at 1959.254 kb on + strand, within AO353_08915at 1959.254 kb on + strand, within AO353_08915at 1959.254 kb on + strand, within AO353_08915at 1959.254 kb on + strand, within AO353_08915at 1959.254 kb on + strand, within AO353_08915at 1959.254 kb on + strand, within AO353_08915at 1959.254 kb on + strand, within AO353_08915at 1959.254 kb on + strand, within AO353_08915at 1959.254 kb on + strand, within AO353_08915at 1959.255 kb on - strand, within AO353_08915at 1959.255 kb on - strand, within AO353_08915at 1959.255 kb on - strand, within AO353_08915at 1959.255 kb on - strand, within AO353_08915at 1959.255 kb on - strand, within AO353_08915at 1959.255 kb on - strand, within AO353_08915at 1959.255 kb on - strand, within AO353_08915at 1959.255 kb on - strand, within AO353_08915at 1959.255 kb on - strand, within AO353_08915at 1959.255 kb on - strand, within AO353_08915at 1959.255 kb on - strand, within AO353_08915at 1959.255 kb on - strand, within AO353_08915at 1959.255 kb on - strand, within AO353_08915at 1959.255 kb on - strand, within AO353_08915at 1959.255 kb on - strand, within AO353_08915at 1959.255 kb on - strand, within AO353_08915at 1959.255 kb on - strand, within AO353_08915at 1959.255 kb on - strand, within AO353_08915

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.32 mM
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1,956,890 - AO353_08900 0.86 -0.5
1,956,890 - AO353_08900 0.86 +2.1
1,956,979 + -0.5
1,956,980 - -1.3
1,956,983 + +1.0
1,956,983 + +1.4
1,956,983 + +1.0
1,956,983 + -2.5
1,956,983 + +0.2
1,956,983 + -1.2
1,956,983 + +0.4
1,956,983 + -0.6
1,956,984 - +2.6
1,956,984 - -1.4
1,956,984 - -0.5
1,956,984 - -0.3
1,956,984 - -0.7
1,956,984 - -1.0
1,956,984 - +1.8
1,956,984 - +1.4
1,956,984 - +0.0
1,957,051 + +0.9
1,957,052 - -0.5
1,957,052 - +0.5
1,957,102 + -0.9
1,957,102 + +0.9
1,957,102 + +0.3
1,957,102 + -1.3
1,957,102 + -0.2
1,957,102 + -0.5
1,957,102 + +0.5
1,957,102 + +1.8
1,957,103 - +1.0
1,957,103 - +1.4
1,957,103 - -0.3
1,957,103 - +0.3
1,957,103 - +0.2
1,957,103 - +1.1
1,957,103 - -0.2
1,957,103 - -0.2
1,957,103 - +0.7
1,957,103 - +2.8
1,957,119 + -0.2
1,957,119 + -0.6
1,957,119 + +0.3
1,957,119 + -0.1
1,957,119 + +1.6
1,957,119 + +1.2
1,957,119 + +0.7
1,957,120 - +1.2
1,957,120 - +0.9
1,957,120 - +1.6
1,957,120 - -1.1
1,957,120 - -0.2
1,957,120 - +2.0
1,957,120 - -0.2
1,957,120 - +0.5
1,957,125 + -1.3
1,957,125 + -0.9
1,957,145 + +0.3
1,957,145 + +0.6
1,957,146 - -0.3
1,957,146 - +0.7
1,957,146 - +0.1
1,957,146 - +0.3
1,957,156 + +1.9
1,957,156 + +1.4
1,957,156 + +1.2
1,957,157 - -0.1
1,957,157 - +0.2
1,957,157 - -0.8
1,957,157 - +1.3
1,957,205 + -0.2
1,957,205 + -0.8
1,957,205 + -0.1
1,957,205 + +1.1
1,957,205 + -0.1
1,957,206 - +0.2
1,957,206 - +0.4
1,957,206 - +0.7
1,957,206 - +0.0
1,957,206 - -0.6
1,957,225 + +0.2
1,957,225 + +0.3
1,957,225 + -2.0
1,957,225 + +0.8
1,957,226 - -0.2
1,957,226 - -0.1
1,957,759 + AO353_08905 0.86 -0.1
1,957,759 + AO353_08905 0.86 +0.6
1,957,759 + AO353_08905 0.86 -0.6
1,957,759 + AO353_08905 0.86 -0.2
1,957,759 + AO353_08905 0.86 -0.2
1,957,759 + AO353_08905 0.86 +1.3
1,957,759 + AO353_08905 0.86 +1.1
1,957,759 + AO353_08905 0.86 +0.7
1,957,759 + AO353_08905 0.86 -1.3
1,957,759 + AO353_08905 0.86 -0.6
1,957,759 + AO353_08905 0.86 +0.6
1,957,759 + AO353_08905 0.86 +0.3
1,957,760 - AO353_08905 0.87 +0.2
1,957,760 - AO353_08905 0.87 +1.0
1,957,760 - AO353_08905 0.87 +0.3
1,957,760 - AO353_08905 0.87 +2.0
1,957,760 - AO353_08905 0.87 +0.8
1,957,760 - AO353_08905 0.87 +0.0
1,957,760 - AO353_08905 0.87 +0.7
1,957,760 - AO353_08905 0.87 +0.2
1,957,760 - AO353_08905 0.87 -0.6
1,957,760 - AO353_08905 0.87 -0.6
1,957,760 - AO353_08905 0.87 +1.7
1,957,761 + AO353_08905 0.87 +0.0
1,957,761 + AO353_08905 0.87 -1.0
1,957,761 + AO353_08905 0.87 +1.1
1,957,761 + AO353_08905 0.87 +0.2
1,957,761 + AO353_08905 0.87 +0.4
1,957,761 + AO353_08905 0.87 +1.0
1,957,761 + AO353_08905 0.87 -0.6
1,957,761 + AO353_08905 0.87 +0.7
1,957,761 + AO353_08905 0.87 -0.1
1,957,762 - AO353_08905 0.87 +1.0
1,957,762 - AO353_08905 0.87 -0.3
1,957,762 - AO353_08905 0.87 +0.6
1,957,762 - AO353_08905 0.87 +0.4
1,957,762 - AO353_08905 0.87 -0.5
1,957,762 - AO353_08905 0.87 +0.4
1,957,762 - AO353_08905 0.87 +2.2
1,957,762 - AO353_08905 0.87 +0.5
1,957,762 - AO353_08905 0.87 +0.3
1,957,803 + +0.6
1,957,803 + +0.5
1,957,803 + +0.3
1,957,803 + -1.5
1,957,803 + -0.5
1,957,804 - +0.0
1,957,804 - +0.7
1,957,804 - -1.8
1,957,804 - +0.1
1,957,804 - -0.7
1,957,804 - -0.1
1,957,804 - +0.4
1,957,804 - +0.2
1,957,846 + -2.2
1,957,847 - +0.6
1,958,019 - AO353_08910 0.28 -0.1
1,958,167 + AO353_08910 0.61 -0.5
1,958,168 - AO353_08910 0.61 -1.4
1,958,168 - AO353_08910 0.61 -0.7
1,958,352 + -0.4
1,958,352 + -0.5
1,958,353 - -0.9
1,958,353 - +0.4
1,958,353 - +0.6
1,958,353 - -0.0
1,958,389 + -0.8
1,958,436 + +0.5
1,958,436 + -0.9
1,958,475 - -0.2
1,958,480 + +0.3
1,958,523 + -0.8
1,958,523 + -0.5
1,958,524 - +0.4
1,958,524 - -0.2
1,958,525 + +0.0
1,958,525 + +1.4
1,958,525 + -0.2
1,958,525 + -0.5
1,958,525 + +0.0
1,958,525 + +0.4
1,958,525 + -0.8
1,958,525 + +0.4
1,958,525 + +0.6
1,958,525 + +0.0
1,958,525 + -0.1
1,958,525 + +0.8
1,958,525 + +1.0
1,958,525 + -1.5
1,958,525 + -0.9
1,958,525 + +1.4
1,958,525 + +0.4
1,958,525 + +1.8
1,958,526 - -0.5
1,958,526 - -0.9
1,958,526 - -0.7
1,958,526 - -1.2
1,958,526 - +0.2
1,958,526 - -1.1
1,958,526 - -2.0
1,958,526 - +0.8
1,958,526 - +0.8
1,958,526 - -0.3
1,958,526 - -0.6
1,958,526 - -0.4
1,958,526 - -0.5
1,958,526 - -0.2
1,958,526 - +1.1
1,958,573 + +0.5
1,958,817 + AO353_08915 0.18 -1.7
1,958,856 - AO353_08915 0.20 +0.1
1,958,954 + AO353_08915 0.25 +1.2
1,958,954 + AO353_08915 0.25 +0.2
1,958,954 + AO353_08915 0.25 +0.3
1,958,954 + AO353_08915 0.25 +1.0
1,958,954 + AO353_08915 0.25 +2.0
1,958,954 + AO353_08915 0.25 -0.1
1,958,955 - AO353_08915 0.25 +0.4
1,958,955 - AO353_08915 0.25 +1.5
1,958,955 - AO353_08915 0.25 -0.6
1,958,955 - AO353_08915 0.25 -1.2
1,959,083 + AO353_08915 0.32 -0.2
1,959,084 - AO353_08915 0.32 -1.6
1,959,084 - AO353_08915 0.32 +0.4
1,959,084 - AO353_08915 0.32 +0.2
1,959,084 - AO353_08915 0.32 +1.5
1,959,084 - AO353_08915 0.32 +1.0
1,959,084 - AO353_08915 0.32 -0.9
1,959,254 + AO353_08915 0.41 +0.0
1,959,254 + AO353_08915 0.41 -0.8
1,959,254 + AO353_08915 0.41 +0.1
1,959,254 + AO353_08915 0.41 +0.4
1,959,254 + AO353_08915 0.41 +0.3
1,959,254 + AO353_08915 0.41 -0.6
1,959,254 + AO353_08915 0.41 +1.7
1,959,254 + AO353_08915 0.41 +0.8
1,959,254 + AO353_08915 0.41 +1.2
1,959,254 + AO353_08915 0.41 -0.5
1,959,254 + AO353_08915 0.41 -1.4
1,959,254 + AO353_08915 0.41 -0.7
1,959,254 + AO353_08915 0.41 +0.6
1,959,254 + AO353_08915 0.41 +1.2
1,959,254 + AO353_08915 0.41 +0.9
1,959,254 + AO353_08915 0.41 -1.0
1,959,254 + AO353_08915 0.41 +0.7
1,959,254 + AO353_08915 0.41 -0.9
1,959,254 + AO353_08915 0.41 -0.1
1,959,254 + AO353_08915 0.41 -0.0
1,959,254 + AO353_08915 0.41 +0.0
1,959,254 + AO353_08915 0.41 -0.3
1,959,254 + AO353_08915 0.41 +0.8
1,959,254 + AO353_08915 0.41 -0.8
1,959,254 + AO353_08915 0.41 -2.4
1,959,254 + AO353_08915 0.41 +0.2
1,959,254 + AO353_08915 0.41 -1.3
1,959,255 - AO353_08915 0.41 +0.4
1,959,255 - AO353_08915 0.41 -0.1
1,959,255 - AO353_08915 0.41 -2.6
1,959,255 - AO353_08915 0.41 -2.4
1,959,255 - AO353_08915 0.41 -0.0
1,959,255 - AO353_08915 0.41 -0.2
1,959,255 - AO353_08915 0.41 +0.4
1,959,255 - AO353_08915 0.41 -0.9
1,959,255 - AO353_08915 0.41 +0.1
1,959,255 - AO353_08915 0.41 +0.3
1,959,255 - AO353_08915 0.41 -2.2
1,959,255 - AO353_08915 0.41 +0.0
1,959,255 - AO353_08915 0.41 -0.5
1,959,255 - AO353_08915 0.41 -0.4
1,959,255 - AO353_08915 0.41 +1.2
1,959,255 - AO353_08915 0.41 -1.2
1,959,255 - AO353_08915 0.41 +1.5
1,959,255 - AO353_08915 0.41 -0.8

Or see this region's nucleotide sequence