Experiment: Cobalt chloride 0.32 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_08550 and AO353_08555 are separated by 121 nucleotides AO353_08555 and AO353_08560 are separated by 223 nucleotides
AO353_08550: AO353_08550 - penicillin amidase, at 1,877,423 to 1,879,834
_08550
AO353_08555: AO353_08555 - hypothetical protein, at 1,879,956 to 1,880,297
_08555
AO353_08560: AO353_08560 - spermidine/putrescine ABC transporter permease, at 1,880,521 to 1,881,411
_08560
Position (kb)
1879
1880
1881 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1878.957 kb on - strand, within AO353_08550 at 1878.957 kb on - strand, within AO353_08550 at 1878.959 kb on + strand, within AO353_08550 at 1878.959 kb on + strand, within AO353_08550 at 1878.959 kb on + strand, within AO353_08550 at 1878.959 kb on + strand, within AO353_08550 at 1878.959 kb on + strand, within AO353_08550 at 1878.960 kb on - strand, within AO353_08550 at 1878.960 kb on - strand, within AO353_08550 at 1878.960 kb on - strand, within AO353_08550 at 1878.960 kb on - strand, within AO353_08550 at 1878.960 kb on - strand, within AO353_08550 at 1878.960 kb on - strand, within AO353_08550 at 1878.960 kb on - strand, within AO353_08550 at 1878.960 kb on - strand, within AO353_08550 at 1878.960 kb on - strand, within AO353_08550 at 1878.960 kb on - strand, within AO353_08550 at 1879.456 kb on - strand, within AO353_08550 at 1879.613 kb on + strand at 1879.613 kb on + strand at 1879.614 kb on - strand at 1879.614 kb on - strand at 1879.614 kb on - strand at 1879.712 kb on + strand at 1879.712 kb on + strand at 1879.712 kb on + strand at 1879.712 kb on + strand at 1879.713 kb on - strand at 1879.713 kb on - strand at 1879.733 kb on + strand at 1879.733 kb on + strand at 1879.733 kb on + strand at 1879.733 kb on + strand at 1879.733 kb on + strand at 1879.733 kb on + strand at 1879.733 kb on + strand at 1879.733 kb on + strand at 1879.733 kb on + strand at 1879.733 kb on + strand at 1879.733 kb on + strand at 1879.733 kb on + strand at 1879.734 kb on - strand at 1879.734 kb on - strand at 1879.734 kb on - strand at 1879.734 kb on - strand at 1879.734 kb on - strand at 1879.734 kb on - strand at 1879.734 kb on - strand at 1879.734 kb on - strand at 1879.734 kb on - strand at 1879.748 kb on + strand at 1879.749 kb on - strand at 1879.832 kb on + strand at 1879.832 kb on + strand at 1879.833 kb on - strand at 1879.833 kb on - strand at 1879.838 kb on + strand at 1879.838 kb on + strand at 1879.838 kb on + strand at 1879.838 kb on + strand at 1879.839 kb on - strand at 1879.839 kb on - strand at 1879.839 kb on - strand at 1879.839 kb on - strand at 1879.839 kb on - strand at 1879.839 kb on - strand at 1879.839 kb on - strand at 1879.863 kb on + strand at 1879.864 kb on - strand at 1879.864 kb on - strand at 1879.910 kb on + strand at 1879.910 kb on + strand at 1879.910 kb on + strand at 1879.910 kb on + strand at 1879.910 kb on + strand at 1879.911 kb on - strand at 1879.911 kb on - strand at 1879.911 kb on - strand at 1879.911 kb on - strand at 1879.911 kb on - strand at 1879.911 kb on - strand at 1879.926 kb on + strand at 1879.926 kb on + strand at 1879.926 kb on + strand at 1879.926 kb on + strand at 1879.926 kb on + strand at 1879.926 kb on + strand at 1879.926 kb on + strand at 1879.926 kb on + strand at 1879.926 kb on + strand at 1879.926 kb on + strand at 1879.926 kb on + strand at 1879.926 kb on + strand at 1879.926 kb on + strand at 1879.926 kb on + strand at 1879.927 kb on - strand at 1879.927 kb on - strand at 1879.927 kb on - strand at 1879.927 kb on - strand at 1879.927 kb on - strand at 1879.927 kb on - strand at 1879.927 kb on - strand at 1879.927 kb on - strand at 1879.927 kb on - strand at 1879.927 kb on - strand at 1879.927 kb on - strand at 1879.927 kb on - strand at 1879.927 kb on - strand at 1879.927 kb on - strand at 1879.927 kb on - strand at 1879.927 kb on - strand at 1879.927 kb on - strand at 1879.927 kb on - strand at 1879.964 kb on + strand at 1879.964 kb on + strand at 1879.964 kb on + strand at 1879.964 kb on + strand at 1879.965 kb on - strand at 1879.965 kb on - strand at 1880.155 kb on + strand, within AO353_08555 at 1880.156 kb on - strand, within AO353_08555 at 1880.156 kb on - strand, within AO353_08555 at 1880.156 kb on - strand, within AO353_08555 at 1880.156 kb on - strand, within AO353_08555 at 1880.156 kb on - strand, within AO353_08555 at 1880.247 kb on + strand, within AO353_08555 at 1880.247 kb on + strand, within AO353_08555 at 1880.247 kb on + strand, within AO353_08555 at 1880.247 kb on + strand, within AO353_08555 at 1880.247 kb on + strand, within AO353_08555 at 1880.247 kb on + strand, within AO353_08555 at 1880.247 kb on + strand, within AO353_08555 at 1880.247 kb on + strand, within AO353_08555 at 1880.248 kb on - strand, within AO353_08555 at 1880.248 kb on - strand, within AO353_08555 at 1880.248 kb on - strand, within AO353_08555 at 1880.248 kb on - strand, within AO353_08555 at 1880.248 kb on - strand, within AO353_08555 at 1880.377 kb on + strand at 1880.377 kb on + strand at 1880.378 kb on - strand at 1880.378 kb on - strand at 1880.378 kb on - strand at 1880.378 kb on - strand at 1880.469 kb on + strand at 1880.470 kb on - strand at 1880.470 kb on - strand at 1880.551 kb on + strand at 1880.551 kb on + strand at 1880.962 kb on + strand, within AO353_08560 at 1880.962 kb on + strand, within AO353_08560 at 1880.962 kb on + strand, within AO353_08560 at 1880.962 kb on + strand, within AO353_08560 at 1880.962 kb on + strand, within AO353_08560 at 1880.962 kb on + strand, within AO353_08560 at 1880.962 kb on + strand, within AO353_08560 at 1880.962 kb on + strand, within AO353_08560 at 1880.962 kb on + strand, within AO353_08560 at 1880.962 kb on + strand, within AO353_08560 at 1880.962 kb on + strand, within AO353_08560 at 1880.963 kb on - strand, within AO353_08560 at 1880.963 kb on - strand, within AO353_08560 at 1880.963 kb on - strand, within AO353_08560 at 1880.963 kb on - strand, within AO353_08560 at 1880.963 kb on - strand, within AO353_08560 at 1880.963 kb on - strand, within AO353_08560 at 1880.963 kb on - strand, within AO353_08560 at 1880.963 kb on - strand, within AO353_08560 at 1880.963 kb on - strand, within AO353_08560 at 1880.967 kb on - strand, within AO353_08560 at 1880.967 kb on - strand, within AO353_08560 at 1880.967 kb on - strand, within AO353_08560 at 1880.967 kb on - strand, within AO353_08560 at 1880.967 kb on - strand, within AO353_08560 at 1880.967 kb on - strand, within AO353_08560 at 1881.206 kb on + strand, within AO353_08560 at 1881.206 kb on + strand, within AO353_08560 at 1881.206 kb on + strand, within AO353_08560 at 1881.207 kb on - strand, within AO353_08560 at 1881.207 kb on - strand, within AO353_08560 at 1881.207 kb on - strand, within AO353_08560 at 1881.207 kb on - strand, within AO353_08560 at 1881.272 kb on + strand, within AO353_08560 at 1881.272 kb on + strand, within AO353_08560 at 1881.272 kb on + strand, within AO353_08560 at 1881.273 kb on - strand, within AO353_08560
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.32 mM remove 1,878,957 - AO353_08550 0.64 +1.6 1,878,957 - AO353_08550 0.64 -0.4 1,878,959 + AO353_08550 0.64 +0.1 1,878,959 + AO353_08550 0.64 -0.8 1,878,959 + AO353_08550 0.64 -0.6 1,878,959 + AO353_08550 0.64 +0.4 1,878,959 + AO353_08550 0.64 +1.8 1,878,960 - AO353_08550 0.64 -0.4 1,878,960 - AO353_08550 0.64 +0.7 1,878,960 - AO353_08550 0.64 +1.3 1,878,960 - AO353_08550 0.64 -0.3 1,878,960 - AO353_08550 0.64 -0.2 1,878,960 - AO353_08550 0.64 +0.5 1,878,960 - AO353_08550 0.64 -1.7 1,878,960 - AO353_08550 0.64 -0.0 1,878,960 - AO353_08550 0.64 -0.1 1,878,960 - AO353_08550 0.64 -0.7 1,879,456 - AO353_08550 0.84 -0.9 1,879,613 + -0.7 1,879,613 + -1.5 1,879,614 - -1.3 1,879,614 - +0.7 1,879,614 - +0.9 1,879,712 + -0.5 1,879,712 + -0.0 1,879,712 + -0.1 1,879,712 + +0.1 1,879,713 - +1.6 1,879,713 - +1.4 1,879,733 + +1.2 1,879,733 + +1.8 1,879,733 + +1.4 1,879,733 + -0.9 1,879,733 + +1.1 1,879,733 + -1.9 1,879,733 + +0.3 1,879,733 + -0.3 1,879,733 + +1.3 1,879,733 + -0.3 1,879,733 + +0.5 1,879,733 + -0.7 1,879,734 - -1.1 1,879,734 - +0.2 1,879,734 - -1.6 1,879,734 - +0.0 1,879,734 - -0.2 1,879,734 - +0.7 1,879,734 - -0.5 1,879,734 - +0.7 1,879,734 - -0.1 1,879,748 + +1.8 1,879,749 - -1.3 1,879,832 + +0.0 1,879,832 + -0.8 1,879,833 - +0.2 1,879,833 - +0.2 1,879,838 + +1.3 1,879,838 + +0.2 1,879,838 + -0.2 1,879,838 + +0.1 1,879,839 - +1.3 1,879,839 - +1.2 1,879,839 - +1.0 1,879,839 - +0.2 1,879,839 - +0.3 1,879,839 - +1.1 1,879,839 - +0.4 1,879,863 + +1.6 1,879,864 - -1.2 1,879,864 - -1.7 1,879,910 + -1.7 1,879,910 + -1.0 1,879,910 + -0.2 1,879,910 + +0.6 1,879,910 + -0.7 1,879,911 - +1.1 1,879,911 - -0.0 1,879,911 - -0.6 1,879,911 - +0.1 1,879,911 - -1.3 1,879,911 - +1.0 1,879,926 + +0.7 1,879,926 + +0.4 1,879,926 + +1.1 1,879,926 + +0.2 1,879,926 + +0.3 1,879,926 + -0.8 1,879,926 + +0.6 1,879,926 + +0.4 1,879,926 + +0.1 1,879,926 + +1.6 1,879,926 + -1.4 1,879,926 + -1.1 1,879,926 + +1.5 1,879,926 + +0.7 1,879,927 - +0.5 1,879,927 - +3.3 1,879,927 - +0.5 1,879,927 - -0.7 1,879,927 - -0.3 1,879,927 - -0.3 1,879,927 - +0.9 1,879,927 - -1.1 1,879,927 - +1.1 1,879,927 - +0.2 1,879,927 - -1.1 1,879,927 - -0.2 1,879,927 - +0.7 1,879,927 - -0.7 1,879,927 - -1.1 1,879,927 - -0.0 1,879,927 - +0.5 1,879,927 - -0.8 1,879,964 + -0.4 1,879,964 + +1.7 1,879,964 + +0.2 1,879,964 + +0.1 1,879,965 - -1.0 1,879,965 - -2.7 1,880,155 + AO353_08555 0.58 +0.6 1,880,156 - AO353_08555 0.58 -1.1 1,880,156 - AO353_08555 0.58 +0.1 1,880,156 - AO353_08555 0.58 -2.4 1,880,156 - AO353_08555 0.58 -1.7 1,880,156 - AO353_08555 0.58 -0.5 1,880,247 + AO353_08555 0.85 -1.2 1,880,247 + AO353_08555 0.85 -0.5 1,880,247 + AO353_08555 0.85 -0.7 1,880,247 + AO353_08555 0.85 -1.3 1,880,247 + AO353_08555 0.85 +0.9 1,880,247 + AO353_08555 0.85 -0.7 1,880,247 + AO353_08555 0.85 -2.8 1,880,247 + AO353_08555 0.85 -0.5 1,880,248 - AO353_08555 0.85 -0.5 1,880,248 - AO353_08555 0.85 -1.0 1,880,248 - AO353_08555 0.85 -0.3 1,880,248 - AO353_08555 0.85 +0.2 1,880,248 - AO353_08555 0.85 -0.4 1,880,377 + -1.4 1,880,377 + -0.8 1,880,378 - +0.8 1,880,378 - -0.2 1,880,378 - -1.6 1,880,378 - -1.8 1,880,469 + -2.4 1,880,470 - -0.3 1,880,470 - -0.1 1,880,551 + +1.8 1,880,551 + -1.1 1,880,962 + AO353_08560 0.49 +0.1 1,880,962 + AO353_08560 0.49 -0.5 1,880,962 + AO353_08560 0.49 -0.4 1,880,962 + AO353_08560 0.49 +0.2 1,880,962 + AO353_08560 0.49 +1.5 1,880,962 + AO353_08560 0.49 -1.2 1,880,962 + AO353_08560 0.49 -0.5 1,880,962 + AO353_08560 0.49 +0.8 1,880,962 + AO353_08560 0.49 -1.6 1,880,962 + AO353_08560 0.49 -1.3 1,880,962 + AO353_08560 0.49 -1.1 1,880,963 - AO353_08560 0.50 -1.4 1,880,963 - AO353_08560 0.50 -1.5 1,880,963 - AO353_08560 0.50 -0.3 1,880,963 - AO353_08560 0.50 -1.9 1,880,963 - AO353_08560 0.50 +0.6 1,880,963 - AO353_08560 0.50 +1.0 1,880,963 - AO353_08560 0.50 -0.4 1,880,963 - AO353_08560 0.50 -0.6 1,880,963 - AO353_08560 0.50 +0.7 1,880,967 - AO353_08560 0.50 -0.1 1,880,967 - AO353_08560 0.50 +0.5 1,880,967 - AO353_08560 0.50 -1.4 1,880,967 - AO353_08560 0.50 +0.7 1,880,967 - AO353_08560 0.50 +1.0 1,880,967 - AO353_08560 0.50 +0.4 1,881,206 + AO353_08560 0.77 -0.9 1,881,206 + AO353_08560 0.77 +0.1 1,881,206 + AO353_08560 0.77 -1.0 1,881,207 - AO353_08560 0.77 -1.4 1,881,207 - AO353_08560 0.77 -0.5 1,881,207 - AO353_08560 0.77 +0.1 1,881,207 - AO353_08560 0.77 +1.4 1,881,272 + AO353_08560 0.84 -0.9 1,881,272 + AO353_08560 0.84 +0.7 1,881,272 + AO353_08560 0.84 +0.8 1,881,273 - AO353_08560 0.84 -0.3
Or see this region's nucleotide sequence