Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_08555

Experiment: Cobalt chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_08550 and AO353_08555 are separated by 121 nucleotidesAO353_08555 and AO353_08560 are separated by 223 nucleotides AO353_08550: AO353_08550 - penicillin amidase, at 1,877,423 to 1,879,834 _08550 AO353_08555: AO353_08555 - hypothetical protein, at 1,879,956 to 1,880,297 _08555 AO353_08560: AO353_08560 - spermidine/putrescine ABC transporter permease, at 1,880,521 to 1,881,411 _08560 Position (kb) 1879 1880 1881Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1878.957 kb on - strand, within AO353_08550at 1878.957 kb on - strand, within AO353_08550at 1878.959 kb on + strand, within AO353_08550at 1878.959 kb on + strand, within AO353_08550at 1878.959 kb on + strand, within AO353_08550at 1878.959 kb on + strand, within AO353_08550at 1878.959 kb on + strand, within AO353_08550at 1878.960 kb on - strand, within AO353_08550at 1878.960 kb on - strand, within AO353_08550at 1878.960 kb on - strand, within AO353_08550at 1878.960 kb on - strand, within AO353_08550at 1878.960 kb on - strand, within AO353_08550at 1878.960 kb on - strand, within AO353_08550at 1878.960 kb on - strand, within AO353_08550at 1878.960 kb on - strand, within AO353_08550at 1878.960 kb on - strand, within AO353_08550at 1878.960 kb on - strand, within AO353_08550at 1879.456 kb on - strand, within AO353_08550at 1879.613 kb on + strandat 1879.613 kb on + strandat 1879.614 kb on - strandat 1879.614 kb on - strandat 1879.614 kb on - strandat 1879.712 kb on + strandat 1879.712 kb on + strandat 1879.712 kb on + strandat 1879.712 kb on + strandat 1879.713 kb on - strandat 1879.713 kb on - strandat 1879.733 kb on + strandat 1879.733 kb on + strandat 1879.733 kb on + strandat 1879.733 kb on + strandat 1879.733 kb on + strandat 1879.733 kb on + strandat 1879.733 kb on + strandat 1879.733 kb on + strandat 1879.733 kb on + strandat 1879.733 kb on + strandat 1879.733 kb on + strandat 1879.733 kb on + strandat 1879.734 kb on - strandat 1879.734 kb on - strandat 1879.734 kb on - strandat 1879.734 kb on - strandat 1879.734 kb on - strandat 1879.734 kb on - strandat 1879.734 kb on - strandat 1879.734 kb on - strandat 1879.734 kb on - strandat 1879.748 kb on + strandat 1879.749 kb on - strandat 1879.832 kb on + strandat 1879.832 kb on + strandat 1879.833 kb on - strandat 1879.833 kb on - strandat 1879.838 kb on + strandat 1879.838 kb on + strandat 1879.838 kb on + strandat 1879.838 kb on + strandat 1879.839 kb on - strandat 1879.839 kb on - strandat 1879.839 kb on - strandat 1879.839 kb on - strandat 1879.839 kb on - strandat 1879.839 kb on - strandat 1879.839 kb on - strandat 1879.863 kb on + strandat 1879.864 kb on - strandat 1879.864 kb on - strandat 1879.910 kb on + strandat 1879.910 kb on + strandat 1879.910 kb on + strandat 1879.910 kb on + strandat 1879.910 kb on + strandat 1879.911 kb on - strandat 1879.911 kb on - strandat 1879.911 kb on - strandat 1879.911 kb on - strandat 1879.911 kb on - strandat 1879.911 kb on - strandat 1879.926 kb on + strandat 1879.926 kb on + strandat 1879.926 kb on + strandat 1879.926 kb on + strandat 1879.926 kb on + strandat 1879.926 kb on + strandat 1879.926 kb on + strandat 1879.926 kb on + strandat 1879.926 kb on + strandat 1879.926 kb on + strandat 1879.926 kb on + strandat 1879.926 kb on + strandat 1879.926 kb on + strandat 1879.926 kb on + strandat 1879.927 kb on - strandat 1879.927 kb on - strandat 1879.927 kb on - strandat 1879.927 kb on - strandat 1879.927 kb on - strandat 1879.927 kb on - strandat 1879.927 kb on - strandat 1879.927 kb on - strandat 1879.927 kb on - strandat 1879.927 kb on - strandat 1879.927 kb on - strandat 1879.927 kb on - strandat 1879.927 kb on - strandat 1879.927 kb on - strandat 1879.927 kb on - strandat 1879.927 kb on - strandat 1879.927 kb on - strandat 1879.927 kb on - strandat 1879.964 kb on + strandat 1879.964 kb on + strandat 1879.964 kb on + strandat 1879.964 kb on + strandat 1879.965 kb on - strandat 1879.965 kb on - strandat 1880.155 kb on + strand, within AO353_08555at 1880.156 kb on - strand, within AO353_08555at 1880.156 kb on - strand, within AO353_08555at 1880.156 kb on - strand, within AO353_08555at 1880.156 kb on - strand, within AO353_08555at 1880.156 kb on - strand, within AO353_08555at 1880.247 kb on + strand, within AO353_08555at 1880.247 kb on + strand, within AO353_08555at 1880.247 kb on + strand, within AO353_08555at 1880.247 kb on + strand, within AO353_08555at 1880.247 kb on + strand, within AO353_08555at 1880.247 kb on + strand, within AO353_08555at 1880.247 kb on + strand, within AO353_08555at 1880.247 kb on + strand, within AO353_08555at 1880.248 kb on - strand, within AO353_08555at 1880.248 kb on - strand, within AO353_08555at 1880.248 kb on - strand, within AO353_08555at 1880.248 kb on - strand, within AO353_08555at 1880.248 kb on - strand, within AO353_08555at 1880.377 kb on + strandat 1880.377 kb on + strandat 1880.378 kb on - strandat 1880.378 kb on - strandat 1880.378 kb on - strandat 1880.378 kb on - strandat 1880.469 kb on + strandat 1880.470 kb on - strandat 1880.470 kb on - strandat 1880.551 kb on + strandat 1880.551 kb on + strandat 1880.962 kb on + strand, within AO353_08560at 1880.962 kb on + strand, within AO353_08560at 1880.962 kb on + strand, within AO353_08560at 1880.962 kb on + strand, within AO353_08560at 1880.962 kb on + strand, within AO353_08560at 1880.962 kb on + strand, within AO353_08560at 1880.962 kb on + strand, within AO353_08560at 1880.962 kb on + strand, within AO353_08560at 1880.962 kb on + strand, within AO353_08560at 1880.962 kb on + strand, within AO353_08560at 1880.962 kb on + strand, within AO353_08560at 1880.963 kb on - strand, within AO353_08560at 1880.963 kb on - strand, within AO353_08560at 1880.963 kb on - strand, within AO353_08560at 1880.963 kb on - strand, within AO353_08560at 1880.963 kb on - strand, within AO353_08560at 1880.963 kb on - strand, within AO353_08560at 1880.963 kb on - strand, within AO353_08560at 1880.963 kb on - strand, within AO353_08560at 1880.963 kb on - strand, within AO353_08560at 1880.967 kb on - strand, within AO353_08560at 1880.967 kb on - strand, within AO353_08560at 1880.967 kb on - strand, within AO353_08560at 1880.967 kb on - strand, within AO353_08560at 1880.967 kb on - strand, within AO353_08560at 1880.967 kb on - strand, within AO353_08560at 1881.206 kb on + strand, within AO353_08560at 1881.206 kb on + strand, within AO353_08560at 1881.206 kb on + strand, within AO353_08560at 1881.207 kb on - strand, within AO353_08560at 1881.207 kb on - strand, within AO353_08560at 1881.207 kb on - strand, within AO353_08560at 1881.207 kb on - strand, within AO353_08560at 1881.272 kb on + strand, within AO353_08560at 1881.272 kb on + strand, within AO353_08560at 1881.272 kb on + strand, within AO353_08560at 1881.273 kb on - strand, within AO353_08560

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.32 mM
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1,878,957 - AO353_08550 0.64 +1.6
1,878,957 - AO353_08550 0.64 -0.4
1,878,959 + AO353_08550 0.64 +0.1
1,878,959 + AO353_08550 0.64 -0.8
1,878,959 + AO353_08550 0.64 -0.6
1,878,959 + AO353_08550 0.64 +0.4
1,878,959 + AO353_08550 0.64 +1.8
1,878,960 - AO353_08550 0.64 -0.4
1,878,960 - AO353_08550 0.64 +0.7
1,878,960 - AO353_08550 0.64 +1.3
1,878,960 - AO353_08550 0.64 -0.3
1,878,960 - AO353_08550 0.64 -0.2
1,878,960 - AO353_08550 0.64 +0.5
1,878,960 - AO353_08550 0.64 -1.7
1,878,960 - AO353_08550 0.64 -0.0
1,878,960 - AO353_08550 0.64 -0.1
1,878,960 - AO353_08550 0.64 -0.7
1,879,456 - AO353_08550 0.84 -0.9
1,879,613 + -0.7
1,879,613 + -1.5
1,879,614 - -1.3
1,879,614 - +0.7
1,879,614 - +0.9
1,879,712 + -0.5
1,879,712 + -0.0
1,879,712 + -0.1
1,879,712 + +0.1
1,879,713 - +1.6
1,879,713 - +1.4
1,879,733 + +1.2
1,879,733 + +1.8
1,879,733 + +1.4
1,879,733 + -0.9
1,879,733 + +1.1
1,879,733 + -1.9
1,879,733 + +0.3
1,879,733 + -0.3
1,879,733 + +1.3
1,879,733 + -0.3
1,879,733 + +0.5
1,879,733 + -0.7
1,879,734 - -1.1
1,879,734 - +0.2
1,879,734 - -1.6
1,879,734 - +0.0
1,879,734 - -0.2
1,879,734 - +0.7
1,879,734 - -0.5
1,879,734 - +0.7
1,879,734 - -0.1
1,879,748 + +1.8
1,879,749 - -1.3
1,879,832 + +0.0
1,879,832 + -0.8
1,879,833 - +0.2
1,879,833 - +0.2
1,879,838 + +1.3
1,879,838 + +0.2
1,879,838 + -0.2
1,879,838 + +0.1
1,879,839 - +1.3
1,879,839 - +1.2
1,879,839 - +1.0
1,879,839 - +0.2
1,879,839 - +0.3
1,879,839 - +1.1
1,879,839 - +0.4
1,879,863 + +1.6
1,879,864 - -1.2
1,879,864 - -1.7
1,879,910 + -1.7
1,879,910 + -1.0
1,879,910 + -0.2
1,879,910 + +0.6
1,879,910 + -0.7
1,879,911 - +1.1
1,879,911 - -0.0
1,879,911 - -0.6
1,879,911 - +0.1
1,879,911 - -1.3
1,879,911 - +1.0
1,879,926 + +0.7
1,879,926 + +0.4
1,879,926 + +1.1
1,879,926 + +0.2
1,879,926 + +0.3
1,879,926 + -0.8
1,879,926 + +0.6
1,879,926 + +0.4
1,879,926 + +0.1
1,879,926 + +1.6
1,879,926 + -1.4
1,879,926 + -1.1
1,879,926 + +1.5
1,879,926 + +0.7
1,879,927 - +0.5
1,879,927 - +3.3
1,879,927 - +0.5
1,879,927 - -0.7
1,879,927 - -0.3
1,879,927 - -0.3
1,879,927 - +0.9
1,879,927 - -1.1
1,879,927 - +1.1
1,879,927 - +0.2
1,879,927 - -1.1
1,879,927 - -0.2
1,879,927 - +0.7
1,879,927 - -0.7
1,879,927 - -1.1
1,879,927 - -0.0
1,879,927 - +0.5
1,879,927 - -0.8
1,879,964 + -0.4
1,879,964 + +1.7
1,879,964 + +0.2
1,879,964 + +0.1
1,879,965 - -1.0
1,879,965 - -2.7
1,880,155 + AO353_08555 0.58 +0.6
1,880,156 - AO353_08555 0.58 -1.1
1,880,156 - AO353_08555 0.58 +0.1
1,880,156 - AO353_08555 0.58 -2.4
1,880,156 - AO353_08555 0.58 -1.7
1,880,156 - AO353_08555 0.58 -0.5
1,880,247 + AO353_08555 0.85 -1.2
1,880,247 + AO353_08555 0.85 -0.5
1,880,247 + AO353_08555 0.85 -0.7
1,880,247 + AO353_08555 0.85 -1.3
1,880,247 + AO353_08555 0.85 +0.9
1,880,247 + AO353_08555 0.85 -0.7
1,880,247 + AO353_08555 0.85 -2.8
1,880,247 + AO353_08555 0.85 -0.5
1,880,248 - AO353_08555 0.85 -0.5
1,880,248 - AO353_08555 0.85 -1.0
1,880,248 - AO353_08555 0.85 -0.3
1,880,248 - AO353_08555 0.85 +0.2
1,880,248 - AO353_08555 0.85 -0.4
1,880,377 + -1.4
1,880,377 + -0.8
1,880,378 - +0.8
1,880,378 - -0.2
1,880,378 - -1.6
1,880,378 - -1.8
1,880,469 + -2.4
1,880,470 - -0.3
1,880,470 - -0.1
1,880,551 + +1.8
1,880,551 + -1.1
1,880,962 + AO353_08560 0.49 +0.1
1,880,962 + AO353_08560 0.49 -0.5
1,880,962 + AO353_08560 0.49 -0.4
1,880,962 + AO353_08560 0.49 +0.2
1,880,962 + AO353_08560 0.49 +1.5
1,880,962 + AO353_08560 0.49 -1.2
1,880,962 + AO353_08560 0.49 -0.5
1,880,962 + AO353_08560 0.49 +0.8
1,880,962 + AO353_08560 0.49 -1.6
1,880,962 + AO353_08560 0.49 -1.3
1,880,962 + AO353_08560 0.49 -1.1
1,880,963 - AO353_08560 0.50 -1.4
1,880,963 - AO353_08560 0.50 -1.5
1,880,963 - AO353_08560 0.50 -0.3
1,880,963 - AO353_08560 0.50 -1.9
1,880,963 - AO353_08560 0.50 +0.6
1,880,963 - AO353_08560 0.50 +1.0
1,880,963 - AO353_08560 0.50 -0.4
1,880,963 - AO353_08560 0.50 -0.6
1,880,963 - AO353_08560 0.50 +0.7
1,880,967 - AO353_08560 0.50 -0.1
1,880,967 - AO353_08560 0.50 +0.5
1,880,967 - AO353_08560 0.50 -1.4
1,880,967 - AO353_08560 0.50 +0.7
1,880,967 - AO353_08560 0.50 +1.0
1,880,967 - AO353_08560 0.50 +0.4
1,881,206 + AO353_08560 0.77 -0.9
1,881,206 + AO353_08560 0.77 +0.1
1,881,206 + AO353_08560 0.77 -1.0
1,881,207 - AO353_08560 0.77 -1.4
1,881,207 - AO353_08560 0.77 -0.5
1,881,207 - AO353_08560 0.77 +0.1
1,881,207 - AO353_08560 0.77 +1.4
1,881,272 + AO353_08560 0.84 -0.9
1,881,272 + AO353_08560 0.84 +0.7
1,881,272 + AO353_08560 0.84 +0.8
1,881,273 - AO353_08560 0.84 -0.3

Or see this region's nucleotide sequence