Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_08445

Experiment: Cobalt chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_08435 and AO353_08440 are separated by 188 nucleotidesAO353_08440 and AO353_08445 are separated by 184 nucleotidesAO353_08445 and AO353_08450 are separated by 63 nucleotidesAO353_08450 and AO353_08455 are separated by 97 nucleotides AO353_08435: AO353_08435 - phosphatidylglycerophosphatase, at 1,855,682 to 1,856,278 _08435 AO353_08440: AO353_08440 - hypothetical protein, at 1,856,467 to 1,856,670 _08440 AO353_08445: AO353_08445 - thymidylate synthase, at 1,856,855 to 1,857,826 _08445 AO353_08450: AO353_08450 - prolipoprotein diacylglyceryl transferase, at 1,857,890 to 1,858,705 _08450 AO353_08455: AO353_08455 - hypothetical protein, at 1,858,803 to 1,859,585 _08455 Position (kb) 1856 1857 1858Strain fitness (log2 ratio) -2 -1 0 1 2at 1855.860 kb on + strand, within AO353_08435at 1855.860 kb on + strand, within AO353_08435at 1855.932 kb on - strand, within AO353_08435at 1856.092 kb on + strand, within AO353_08435at 1856.092 kb on + strand, within AO353_08435at 1856.093 kb on - strand, within AO353_08435at 1856.093 kb on - strand, within AO353_08435at 1856.093 kb on - strand, within AO353_08435at 1856.093 kb on - strand, within AO353_08435at 1856.093 kb on - strand, within AO353_08435at 1856.169 kb on - strand, within AO353_08435at 1856.345 kb on + strandat 1856.345 kb on + strandat 1856.345 kb on + strandat 1856.345 kb on + strandat 1856.345 kb on + strandat 1856.345 kb on + strandat 1856.345 kb on + strandat 1856.345 kb on + strandat 1856.345 kb on + strandat 1856.346 kb on - strandat 1856.346 kb on - strandat 1856.346 kb on - strandat 1856.346 kb on - strandat 1856.346 kb on - strandat 1856.346 kb on - strandat 1856.346 kb on - strandat 1856.346 kb on - strandat 1856.348 kb on + strandat 1856.348 kb on + strandat 1856.348 kb on + strandat 1856.348 kb on + strandat 1856.348 kb on + strandat 1856.348 kb on + strandat 1856.348 kb on + strandat 1856.348 kb on + strandat 1856.348 kb on + strandat 1856.349 kb on - strandat 1856.349 kb on - strandat 1856.349 kb on - strandat 1856.349 kb on - strandat 1856.349 kb on - strandat 1856.349 kb on - strandat 1856.349 kb on - strandat 1856.455 kb on + strandat 1856.515 kb on + strand, within AO353_08440at 1856.515 kb on + strand, within AO353_08440at 1856.515 kb on + strand, within AO353_08440at 1856.515 kb on + strand, within AO353_08440at 1856.515 kb on + strand, within AO353_08440at 1856.544 kb on - strand, within AO353_08440at 1856.685 kb on + strandat 1856.685 kb on + strandat 1856.685 kb on + strandat 1856.685 kb on + strandat 1856.686 kb on - strandat 1856.686 kb on - strandat 1856.708 kb on + strandat 1856.708 kb on + strandat 1856.732 kb on + strandat 1856.732 kb on + strandat 1856.732 kb on + strandat 1856.732 kb on + strandat 1856.732 kb on + strandat 1856.732 kb on + strandat 1856.732 kb on + strandat 1856.733 kb on - strandat 1856.733 kb on - strandat 1856.733 kb on - strandat 1856.733 kb on - strandat 1856.733 kb on - strandat 1856.733 kb on - strandat 1856.734 kb on + strandat 1856.734 kb on + strandat 1856.735 kb on - strandat 1856.735 kb on - strandat 1856.735 kb on - strandat 1856.784 kb on + strandat 1856.784 kb on + strandat 1856.784 kb on + strandat 1856.784 kb on + strandat 1856.784 kb on + strandat 1856.784 kb on + strandat 1856.784 kb on + strandat 1856.784 kb on + strandat 1856.785 kb on - strandat 1856.785 kb on - strandat 1856.785 kb on - strandat 1856.785 kb on - strandat 1856.785 kb on - strandat 1856.785 kb on - strandat 1856.785 kb on - strandat 1856.785 kb on - strandat 1856.785 kb on - strandat 1856.785 kb on - strandat 1856.785 kb on - strandat 1856.785 kb on - strandat 1856.785 kb on - strandat 1856.785 kb on - strandat 1856.792 kb on + strandat 1856.793 kb on - strandat 1856.793 kb on - strandat 1856.856 kb on + strandat 1856.856 kb on + strandat 1856.856 kb on + strandat 1856.856 kb on + strandat 1856.856 kb on + strandat 1856.856 kb on + strandat 1856.857 kb on - strandat 1856.857 kb on - strandat 1856.857 kb on - strandat 1857.832 kb on - strandat 1857.832 kb on - strandat 1857.832 kb on - strandat 1857.832 kb on - strandat 1857.832 kb on - strandat 1857.832 kb on - strandat 1857.832 kb on - strandat 1857.877 kb on - strandat 1857.877 kb on - strandat 1857.877 kb on - strandat 1857.877 kb on - strandat 1857.877 kb on - strandat 1857.877 kb on - strandat 1857.877 kb on - strandat 1857.877 kb on - strandat 1857.877 kb on - strandat 1857.892 kb on - strandat 1857.892 kb on - strandat 1857.892 kb on - strandat 1857.892 kb on - strandat 1857.931 kb on - strandat 1858.720 kb on - strandat 1858.733 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.32 mM
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1,855,860 + AO353_08435 0.30 +0.4
1,855,860 + AO353_08435 0.30 -0.4
1,855,932 - AO353_08435 0.42 +2.0
1,856,092 + AO353_08435 0.69 +0.5
1,856,092 + AO353_08435 0.69 +0.6
1,856,093 - AO353_08435 0.69 -0.6
1,856,093 - AO353_08435 0.69 -1.0
1,856,093 - AO353_08435 0.69 +0.6
1,856,093 - AO353_08435 0.69 +0.4
1,856,093 - AO353_08435 0.69 +1.4
1,856,169 - AO353_08435 0.82 +1.6
1,856,345 + -1.5
1,856,345 + +0.1
1,856,345 + -1.6
1,856,345 + +1.2
1,856,345 + -2.0
1,856,345 + +1.8
1,856,345 + +0.8
1,856,345 + +1.8
1,856,345 + +0.8
1,856,346 - +1.5
1,856,346 - -0.0
1,856,346 - +0.3
1,856,346 - -0.6
1,856,346 - +1.5
1,856,346 - -0.7
1,856,346 - -1.4
1,856,346 - -0.2
1,856,348 + -0.8
1,856,348 + +0.3
1,856,348 + +1.4
1,856,348 + +0.4
1,856,348 + +0.3
1,856,348 + +1.0
1,856,348 + +0.7
1,856,348 + -0.7
1,856,348 + -0.5
1,856,349 - +0.5
1,856,349 - -1.7
1,856,349 - +1.8
1,856,349 - -0.5
1,856,349 - +0.4
1,856,349 - +1.3
1,856,349 - +0.4
1,856,455 + +0.4
1,856,515 + AO353_08440 0.24 -0.5
1,856,515 + AO353_08440 0.24 +1.4
1,856,515 + AO353_08440 0.24 +1.3
1,856,515 + AO353_08440 0.24 +0.1
1,856,515 + AO353_08440 0.24 -0.4
1,856,544 - AO353_08440 0.38 -1.4
1,856,685 + -0.8
1,856,685 + -0.2
1,856,685 + -1.1
1,856,685 + -0.9
1,856,686 - -0.2
1,856,686 - +0.5
1,856,708 + -1.0
1,856,708 + +0.3
1,856,732 + -0.7
1,856,732 + -0.9
1,856,732 + -0.4
1,856,732 + -0.3
1,856,732 + -0.9
1,856,732 + -0.6
1,856,732 + -0.6
1,856,733 - -0.5
1,856,733 - -0.4
1,856,733 - -0.4
1,856,733 - -0.2
1,856,733 - -0.0
1,856,733 - -1.9
1,856,734 + -0.2
1,856,734 + -1.7
1,856,735 - -0.3
1,856,735 - +0.7
1,856,735 - +0.8
1,856,784 + -0.9
1,856,784 + -0.5
1,856,784 + +1.0
1,856,784 + -0.0
1,856,784 + +0.3
1,856,784 + -0.2
1,856,784 + +0.1
1,856,784 + +0.4
1,856,785 - -1.6
1,856,785 - -0.9
1,856,785 - -0.4
1,856,785 - -0.9
1,856,785 - +0.2
1,856,785 - +1.0
1,856,785 - +1.3
1,856,785 - +0.9
1,856,785 - -0.9
1,856,785 - -2.7
1,856,785 - +1.7
1,856,785 - -0.2
1,856,785 - +0.8
1,856,785 - +0.5
1,856,792 + +1.4
1,856,793 - -1.6
1,856,793 - +1.0
1,856,856 + +0.7
1,856,856 + -0.7
1,856,856 + +1.4
1,856,856 + -2.1
1,856,856 + +1.1
1,856,856 + -0.0
1,856,857 - -0.1
1,856,857 - +1.5
1,856,857 - +0.4
1,857,832 - -0.8
1,857,832 - -1.6
1,857,832 - -0.6
1,857,832 - +1.4
1,857,832 - -2.1
1,857,832 - -0.2
1,857,832 - -0.4
1,857,877 - +1.0
1,857,877 - +0.8
1,857,877 - -0.4
1,857,877 - +1.0
1,857,877 - -0.6
1,857,877 - -0.9
1,857,877 - -0.4
1,857,877 - +0.2
1,857,877 - -2.0
1,857,892 - +0.4
1,857,892 - -0.7
1,857,892 - +0.6
1,857,892 - +0.2
1,857,931 - +1.2
1,858,720 - -0.8
1,858,733 - +1.0

Or see this region's nucleotide sequence