Experiment: Cobalt chloride 0.32 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_07660 and AO353_07665 are separated by 23 nucleotides AO353_07665 and AO353_07670 are separated by 428 nucleotides
AO353_07660: AO353_07660 - sarcosine oxidase (5,10-methylenetetrahydrofolate-forming), beta subunit (EC 1.5.3.24) (from data) , at 1,686,482 to 1,687,732
_07660
AO353_07665: AO353_07665 - Serine hydroxymethyltransferase (EC 2.1.2.1) (from data) , at 1,687,756 to 1,689,009
_07665
AO353_07670: AO353_07670 - L-threonine aldolase (EC 4.1.2.5) (from data) , at 1,689,438 to 1,690,478
_07670
Position (kb)
1687
1688
1689
1690 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1686.842 kb on - strand, within AO353_07660 at 1686.885 kb on + strand, within AO353_07660 at 1686.885 kb on + strand, within AO353_07660 at 1686.885 kb on + strand, within AO353_07660 at 1686.885 kb on + strand, within AO353_07660 at 1686.885 kb on + strand, within AO353_07660 at 1686.886 kb on - strand, within AO353_07660 at 1686.886 kb on - strand, within AO353_07660 at 1686.886 kb on - strand, within AO353_07660 at 1686.886 kb on - strand, within AO353_07660 at 1686.894 kb on - strand, within AO353_07660 at 1687.082 kb on + strand, within AO353_07660 at 1687.082 kb on + strand, within AO353_07660 at 1687.082 kb on + strand, within AO353_07660 at 1687.083 kb on - strand, within AO353_07660 at 1687.083 kb on - strand, within AO353_07660 at 1687.377 kb on + strand, within AO353_07660 at 1687.377 kb on + strand, within AO353_07660 at 1687.377 kb on + strand, within AO353_07660 at 1687.378 kb on - strand, within AO353_07660 at 1687.378 kb on - strand, within AO353_07660 at 1687.407 kb on + strand, within AO353_07660 at 1687.407 kb on + strand, within AO353_07660 at 1687.407 kb on + strand, within AO353_07660 at 1687.407 kb on + strand, within AO353_07660 at 1687.408 kb on - strand, within AO353_07660 at 1687.408 kb on - strand, within AO353_07660 at 1687.408 kb on - strand, within AO353_07660 at 1687.408 kb on - strand, within AO353_07660 at 1687.408 kb on - strand, within AO353_07660 at 1687.408 kb on - strand, within AO353_07660 at 1687.408 kb on - strand, within AO353_07660 at 1687.408 kb on - strand, within AO353_07660 at 1687.455 kb on + strand, within AO353_07660 at 1687.456 kb on - strand, within AO353_07660 at 1687.456 kb on - strand, within AO353_07660 at 1687.482 kb on + strand, within AO353_07660 at 1687.482 kb on + strand, within AO353_07660 at 1687.482 kb on + strand, within AO353_07660 at 1687.482 kb on + strand, within AO353_07660 at 1687.483 kb on - strand, within AO353_07660 at 1687.584 kb on + strand, within AO353_07660 at 1687.584 kb on + strand, within AO353_07660 at 1687.584 kb on + strand, within AO353_07660 at 1687.584 kb on + strand, within AO353_07660 at 1687.585 kb on - strand, within AO353_07660 at 1687.585 kb on - strand, within AO353_07660 at 1687.585 kb on - strand, within AO353_07660 at 1687.585 kb on - strand, within AO353_07660 at 1687.585 kb on - strand, within AO353_07660 at 1687.585 kb on - strand, within AO353_07660 at 1687.585 kb on - strand, within AO353_07660 at 1687.585 kb on - strand, within AO353_07660 at 1687.587 kb on + strand, within AO353_07660 at 1687.587 kb on + strand, within AO353_07660 at 1687.587 kb on + strand, within AO353_07660 at 1687.587 kb on + strand, within AO353_07660 at 1687.587 kb on + strand, within AO353_07660 at 1687.635 kb on + strand at 1687.723 kb on - strand at 1687.732 kb on + strand at 1687.732 kb on + strand at 1687.732 kb on + strand at 1687.732 kb on + strand at 1687.732 kb on + strand at 1687.733 kb on - strand at 1687.733 kb on - strand at 1687.740 kb on + strand at 1687.740 kb on + strand at 1687.741 kb on - strand at 1687.764 kb on - strand at 1687.888 kb on - strand, within AO353_07665 at 1688.083 kb on + strand, within AO353_07665 at 1688.083 kb on + strand, within AO353_07665 at 1688.083 kb on + strand, within AO353_07665 at 1688.083 kb on + strand, within AO353_07665 at 1688.083 kb on + strand, within AO353_07665 at 1688.083 kb on + strand, within AO353_07665 at 1688.083 kb on + strand, within AO353_07665 at 1688.083 kb on + strand, within AO353_07665 at 1688.083 kb on + strand, within AO353_07665 at 1688.083 kb on + strand, within AO353_07665 at 1688.083 kb on + strand, within AO353_07665 at 1688.083 kb on + strand, within AO353_07665 at 1688.083 kb on + strand, within AO353_07665 at 1688.083 kb on + strand, within AO353_07665 at 1688.084 kb on - strand, within AO353_07665 at 1688.084 kb on - strand, within AO353_07665 at 1688.084 kb on - strand, within AO353_07665 at 1688.084 kb on - strand, within AO353_07665 at 1688.084 kb on - strand, within AO353_07665 at 1688.084 kb on - strand, within AO353_07665 at 1688.084 kb on - strand, within AO353_07665 at 1688.084 kb on - strand, within AO353_07665 at 1688.084 kb on - strand, within AO353_07665 at 1688.151 kb on - strand, within AO353_07665 at 1688.151 kb on - strand, within AO353_07665 at 1688.151 kb on - strand, within AO353_07665 at 1688.369 kb on + strand, within AO353_07665 at 1688.477 kb on + strand, within AO353_07665 at 1688.477 kb on + strand, within AO353_07665 at 1688.478 kb on - strand, within AO353_07665 at 1688.478 kb on - strand, within AO353_07665 at 1688.478 kb on - strand, within AO353_07665 at 1688.478 kb on - strand, within AO353_07665 at 1688.544 kb on - strand, within AO353_07665 at 1688.591 kb on + strand, within AO353_07665 at 1688.591 kb on + strand, within AO353_07665 at 1688.591 kb on + strand, within AO353_07665 at 1688.591 kb on + strand, within AO353_07665 at 1688.591 kb on + strand, within AO353_07665 at 1688.592 kb on - strand, within AO353_07665 at 1688.592 kb on - strand, within AO353_07665 at 1688.592 kb on - strand, within AO353_07665 at 1688.664 kb on + strand, within AO353_07665 at 1688.664 kb on + strand, within AO353_07665 at 1688.664 kb on + strand, within AO353_07665 at 1688.664 kb on + strand, within AO353_07665 at 1688.664 kb on + strand, within AO353_07665 at 1688.664 kb on + strand, within AO353_07665 at 1688.664 kb on + strand, within AO353_07665 at 1688.664 kb on + strand, within AO353_07665 at 1688.664 kb on + strand, within AO353_07665 at 1688.665 kb on - strand, within AO353_07665 at 1688.665 kb on - strand, within AO353_07665 at 1688.693 kb on + strand, within AO353_07665 at 1688.693 kb on + strand, within AO353_07665 at 1688.693 kb on + strand, within AO353_07665 at 1688.693 kb on + strand, within AO353_07665 at 1688.693 kb on + strand, within AO353_07665 at 1688.694 kb on - strand, within AO353_07665 at 1688.742 kb on - strand, within AO353_07665 at 1688.816 kb on + strand, within AO353_07665 at 1688.816 kb on + strand, within AO353_07665 at 1688.846 kb on + strand, within AO353_07665 at 1688.846 kb on + strand, within AO353_07665 at 1688.846 kb on + strand, within AO353_07665 at 1688.847 kb on - strand, within AO353_07665 at 1688.897 kb on + strand at 1688.897 kb on + strand at 1688.897 kb on + strand at 1688.897 kb on + strand at 1688.897 kb on + strand at 1688.897 kb on + strand at 1688.897 kb on + strand at 1688.897 kb on + strand at 1688.897 kb on + strand at 1688.897 kb on + strand at 1688.898 kb on - strand at 1688.898 kb on - strand at 1688.898 kb on - strand at 1688.898 kb on - strand at 1688.898 kb on - strand at 1688.898 kb on - strand at 1688.898 kb on - strand at 1688.898 kb on - strand at 1688.979 kb on - strand at 1689.060 kb on + strand at 1689.060 kb on + strand at 1689.060 kb on + strand at 1689.060 kb on + strand at 1689.060 kb on + strand at 1689.060 kb on + strand at 1689.060 kb on + strand at 1689.060 kb on + strand at 1689.061 kb on - strand at 1689.061 kb on - strand at 1689.061 kb on - strand at 1689.061 kb on - strand at 1689.065 kb on + strand at 1689.092 kb on + strand at 1689.092 kb on + strand at 1689.093 kb on - strand at 1689.121 kb on - strand at 1689.121 kb on - strand at 1689.121 kb on - strand at 1689.145 kb on + strand at 1689.170 kb on + strand at 1689.170 kb on + strand at 1689.170 kb on + strand at 1689.171 kb on - strand at 1689.270 kb on + strand at 1689.271 kb on - strand at 1689.288 kb on + strand at 1689.288 kb on + strand at 1689.289 kb on - strand at 1689.289 kb on - strand at 1689.306 kb on + strand at 1689.348 kb on + strand at 1689.348 kb on + strand at 1689.348 kb on + strand at 1689.349 kb on - strand at 1689.349 kb on - strand at 1689.349 kb on - strand at 1689.349 kb on - strand at 1689.403 kb on + strand at 1689.474 kb on + strand at 1689.474 kb on + strand at 1689.474 kb on + strand at 1689.474 kb on + strand at 1689.474 kb on + strand at 1689.474 kb on + strand at 1689.475 kb on - strand at 1689.475 kb on - strand at 1689.540 kb on + strand at 1689.541 kb on - strand at 1689.672 kb on + strand, within AO353_07670 at 1689.672 kb on + strand, within AO353_07670 at 1689.672 kb on + strand, within AO353_07670 at 1689.672 kb on + strand, within AO353_07670 at 1689.672 kb on + strand, within AO353_07670 at 1689.672 kb on + strand, within AO353_07670 at 1689.672 kb on + strand, within AO353_07670 at 1689.673 kb on - strand, within AO353_07670 at 1689.673 kb on - strand, within AO353_07670 at 1689.673 kb on - strand, within AO353_07670 at 1689.891 kb on + strand, within AO353_07670 at 1689.891 kb on + strand, within AO353_07670 at 1689.891 kb on + strand, within AO353_07670 at 1689.892 kb on - strand, within AO353_07670 at 1689.892 kb on - strand, within AO353_07670 at 1689.892 kb on - strand, within AO353_07670 at 1689.892 kb on - strand, within AO353_07670 at 1689.892 kb on - strand, within AO353_07670 at 1689.892 kb on - strand, within AO353_07670 at 1689.892 kb on - strand, within AO353_07670 at 1689.892 kb on - strand, within AO353_07670 at 1689.892 kb on - strand, within AO353_07670 at 1689.892 kb on - strand, within AO353_07670 at 1689.892 kb on - strand, within AO353_07670
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.32 mM remove 1,686,842 - AO353_07660 0.29 -0.3 1,686,885 + AO353_07660 0.32 -0.5 1,686,885 + AO353_07660 0.32 -0.9 1,686,885 + AO353_07660 0.32 +0.5 1,686,885 + AO353_07660 0.32 +0.2 1,686,885 + AO353_07660 0.32 +1.2 1,686,886 - AO353_07660 0.32 +0.0 1,686,886 - AO353_07660 0.32 +0.4 1,686,886 - AO353_07660 0.32 -0.5 1,686,886 - AO353_07660 0.32 -0.5 1,686,894 - AO353_07660 0.33 +0.3 1,687,082 + AO353_07660 0.48 +1.7 1,687,082 + AO353_07660 0.48 -1.7 1,687,082 + AO353_07660 0.48 -0.5 1,687,083 - AO353_07660 0.48 +0.1 1,687,083 - AO353_07660 0.48 +0.9 1,687,377 + AO353_07660 0.72 +0.6 1,687,377 + AO353_07660 0.72 -0.1 1,687,377 + AO353_07660 0.72 -0.5 1,687,378 - AO353_07660 0.72 -1.7 1,687,378 - AO353_07660 0.72 -0.5 1,687,407 + AO353_07660 0.74 -1.3 1,687,407 + AO353_07660 0.74 -0.5 1,687,407 + AO353_07660 0.74 -1.1 1,687,407 + AO353_07660 0.74 -1.2 1,687,408 - AO353_07660 0.74 -1.5 1,687,408 - AO353_07660 0.74 +0.6 1,687,408 - AO353_07660 0.74 -1.5 1,687,408 - AO353_07660 0.74 +0.2 1,687,408 - AO353_07660 0.74 -0.4 1,687,408 - AO353_07660 0.74 +0.0 1,687,408 - AO353_07660 0.74 -1.1 1,687,408 - AO353_07660 0.74 +0.3 1,687,455 + AO353_07660 0.78 +0.5 1,687,456 - AO353_07660 0.78 -0.7 1,687,456 - AO353_07660 0.78 +0.2 1,687,482 + AO353_07660 0.80 -0.9 1,687,482 + AO353_07660 0.80 -0.9 1,687,482 + AO353_07660 0.80 -2.5 1,687,482 + AO353_07660 0.80 +0.5 1,687,483 - AO353_07660 0.80 -0.1 1,687,584 + AO353_07660 0.88 +0.8 1,687,584 + AO353_07660 0.88 +0.5 1,687,584 + AO353_07660 0.88 +0.1 1,687,584 + AO353_07660 0.88 +0.3 1,687,585 - AO353_07660 0.88 +0.1 1,687,585 - AO353_07660 0.88 +0.2 1,687,585 - AO353_07660 0.88 +0.9 1,687,585 - AO353_07660 0.88 +0.3 1,687,585 - AO353_07660 0.88 -0.7 1,687,585 - AO353_07660 0.88 +0.0 1,687,585 - AO353_07660 0.88 +0.2 1,687,585 - AO353_07660 0.88 +0.8 1,687,587 + AO353_07660 0.88 +1.7 1,687,587 + AO353_07660 0.88 +1.6 1,687,587 + AO353_07660 0.88 +0.1 1,687,587 + AO353_07660 0.88 +0.6 1,687,587 + AO353_07660 0.88 -1.7 1,687,635 + +0.1 1,687,723 - +0.4 1,687,732 + +3.0 1,687,732 + -0.6 1,687,732 + +0.1 1,687,732 + +1.2 1,687,732 + +0.5 1,687,733 - +2.1 1,687,733 - +1.4 1,687,740 + +0.1 1,687,740 + +0.1 1,687,741 - -1.1 1,687,764 - -0.2 1,687,888 - AO353_07665 0.11 -1.0 1,688,083 + AO353_07665 0.26 -1.0 1,688,083 + AO353_07665 0.26 -1.2 1,688,083 + AO353_07665 0.26 -2.0 1,688,083 + AO353_07665 0.26 +0.1 1,688,083 + AO353_07665 0.26 +2.0 1,688,083 + AO353_07665 0.26 -0.8 1,688,083 + AO353_07665 0.26 -0.7 1,688,083 + AO353_07665 0.26 +0.8 1,688,083 + AO353_07665 0.26 -0.5 1,688,083 + AO353_07665 0.26 +0.6 1,688,083 + AO353_07665 0.26 +0.5 1,688,083 + AO353_07665 0.26 +1.2 1,688,083 + AO353_07665 0.26 +1.4 1,688,083 + AO353_07665 0.26 +0.5 1,688,084 - AO353_07665 0.26 -0.7 1,688,084 - AO353_07665 0.26 -0.3 1,688,084 - AO353_07665 0.26 -0.5 1,688,084 - AO353_07665 0.26 -1.3 1,688,084 - AO353_07665 0.26 -0.6 1,688,084 - AO353_07665 0.26 +1.5 1,688,084 - AO353_07665 0.26 +0.1 1,688,084 - AO353_07665 0.26 -0.3 1,688,084 - AO353_07665 0.26 +0.9 1,688,151 - AO353_07665 0.31 +0.0 1,688,151 - AO353_07665 0.31 +0.7 1,688,151 - AO353_07665 0.31 +0.1 1,688,369 + AO353_07665 0.49 -1.1 1,688,477 + AO353_07665 0.57 -0.1 1,688,477 + AO353_07665 0.57 -0.2 1,688,478 - AO353_07665 0.58 +0.4 1,688,478 - AO353_07665 0.58 -0.2 1,688,478 - AO353_07665 0.58 -0.5 1,688,478 - AO353_07665 0.58 +0.5 1,688,544 - AO353_07665 0.63 -0.5 1,688,591 + AO353_07665 0.67 +1.1 1,688,591 + AO353_07665 0.67 -0.3 1,688,591 + AO353_07665 0.67 +0.3 1,688,591 + AO353_07665 0.67 -0.3 1,688,591 + AO353_07665 0.67 -0.8 1,688,592 - AO353_07665 0.67 -0.2 1,688,592 - AO353_07665 0.67 +0.5 1,688,592 - AO353_07665 0.67 -0.5 1,688,664 + AO353_07665 0.72 -0.5 1,688,664 + AO353_07665 0.72 +0.1 1,688,664 + AO353_07665 0.72 +2.1 1,688,664 + AO353_07665 0.72 -0.3 1,688,664 + AO353_07665 0.72 -1.6 1,688,664 + AO353_07665 0.72 +1.1 1,688,664 + AO353_07665 0.72 +0.5 1,688,664 + AO353_07665 0.72 -1.3 1,688,664 + AO353_07665 0.72 +0.3 1,688,665 - AO353_07665 0.72 +2.2 1,688,665 - AO353_07665 0.72 -0.1 1,688,693 + AO353_07665 0.75 +0.0 1,688,693 + AO353_07665 0.75 +1.2 1,688,693 + AO353_07665 0.75 -1.5 1,688,693 + AO353_07665 0.75 +1.7 1,688,693 + AO353_07665 0.75 -0.9 1,688,694 - AO353_07665 0.75 +1.2 1,688,742 - AO353_07665 0.79 -0.1 1,688,816 + AO353_07665 0.85 +0.9 1,688,816 + AO353_07665 0.85 +0.1 1,688,846 + AO353_07665 0.87 +0.7 1,688,846 + AO353_07665 0.87 -1.5 1,688,846 + AO353_07665 0.87 -1.5 1,688,847 - AO353_07665 0.87 +1.0 1,688,897 + -0.2 1,688,897 + -1.3 1,688,897 + -1.5 1,688,897 + +1.1 1,688,897 + -0.1 1,688,897 + -1.5 1,688,897 + -0.8 1,688,897 + -1.1 1,688,897 + -1.2 1,688,897 + +0.6 1,688,898 - +0.1 1,688,898 - +1.1 1,688,898 - +0.2 1,688,898 - +1.2 1,688,898 - -0.1 1,688,898 - -0.3 1,688,898 - -1.8 1,688,898 - -2.1 1,688,979 - -2.1 1,689,060 + +0.9 1,689,060 + +0.9 1,689,060 + -1.4 1,689,060 + -2.2 1,689,060 + +1.1 1,689,060 + -0.1 1,689,060 + +1.4 1,689,060 + -0.2 1,689,061 - -0.1 1,689,061 - +0.6 1,689,061 - +0.2 1,689,061 - -0.3 1,689,065 + -0.1 1,689,092 + +0.8 1,689,092 + -0.2 1,689,093 - -0.8 1,689,121 - -0.5 1,689,121 - -0.5 1,689,121 - -0.9 1,689,145 + -2.4 1,689,170 + -1.8 1,689,170 + +0.1 1,689,170 + +0.8 1,689,171 - +1.9 1,689,270 + +0.7 1,689,271 - -0.3 1,689,288 + +0.7 1,689,288 + -0.8 1,689,289 - +0.7 1,689,289 - +0.6 1,689,306 + +0.1 1,689,348 + -0.6 1,689,348 + -0.6 1,689,348 + +0.2 1,689,349 - -0.6 1,689,349 - -0.4 1,689,349 - +0.5 1,689,349 - -1.7 1,689,403 + +0.3 1,689,474 + +1.3 1,689,474 + -0.7 1,689,474 + -0.6 1,689,474 + +0.0 1,689,474 + -0.1 1,689,474 + +0.3 1,689,475 - -1.1 1,689,475 - +0.2 1,689,540 + -1.7 1,689,541 - +1.7 1,689,672 + AO353_07670 0.22 +0.1 1,689,672 + AO353_07670 0.22 -0.3 1,689,672 + AO353_07670 0.22 -1.0 1,689,672 + AO353_07670 0.22 +0.2 1,689,672 + AO353_07670 0.22 -0.7 1,689,672 + AO353_07670 0.22 -2.4 1,689,672 + AO353_07670 0.22 +0.2 1,689,673 - AO353_07670 0.23 -0.5 1,689,673 - AO353_07670 0.23 -0.6 1,689,673 - AO353_07670 0.23 -0.6 1,689,891 + AO353_07670 0.44 +0.3 1,689,891 + AO353_07670 0.44 +0.2 1,689,891 + AO353_07670 0.44 -1.3 1,689,892 - AO353_07670 0.44 +0.2 1,689,892 - AO353_07670 0.44 +1.4 1,689,892 - AO353_07670 0.44 -0.3 1,689,892 - AO353_07670 0.44 +0.7 1,689,892 - AO353_07670 0.44 -0.3 1,689,892 - AO353_07670 0.44 -0.3 1,689,892 - AO353_07670 0.44 +1.1 1,689,892 - AO353_07670 0.44 -0.7 1,689,892 - AO353_07670 0.44 +1.7 1,689,892 - AO353_07670 0.44 +0.3 1,689,892 - AO353_07670 0.44 -0.3
Or see this region's nucleotide sequence