Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_06050

Experiment: Cobalt chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_06045 and AO353_06050 overlap by 4 nucleotidesAO353_06050 and AO353_06055 are separated by 154 nucleotidesAO353_06055 and AO353_06060 are separated by 146 nucleotides AO353_06045: AO353_06045 - exodeoxyribonuclease V subunit beta, at 1,342,697 to 1,346,386 _06045 AO353_06050: AO353_06050 - exodeoxyribonuclease V subunit gamma, at 1,346,383 to 1,349,835 _06050 AO353_06055: AO353_06055 - 5S ribosomal RNA, at 1,349,990 to 1,350,105 _06055 AO353_06060: AO353_06060 - 23S ribosomal RNA, at 1,350,252 to 1,353,164 _06060 Position (kb) 1346 1347 1348 1349 1350Strain fitness (log2 ratio) -2 -1 0 1 2at 1345.561 kb on + strand, within AO353_06045at 1345.590 kb on + strand, within AO353_06045at 1346.284 kb on - strandat 1346.361 kb on - strandat 1346.492 kb on + strandat 1346.492 kb on + strandat 1346.659 kb on - strandat 1346.736 kb on + strand, within AO353_06050at 1346.736 kb on + strand, within AO353_06050at 1347.333 kb on - strand, within AO353_06050at 1347.333 kb on - strand, within AO353_06050at 1347.333 kb on - strand, within AO353_06050at 1347.402 kb on - strand, within AO353_06050at 1347.402 kb on - strand, within AO353_06050at 1347.402 kb on - strand, within AO353_06050at 1347.602 kb on + strand, within AO353_06050at 1347.603 kb on - strand, within AO353_06050at 1347.603 kb on - strand, within AO353_06050at 1347.603 kb on - strand, within AO353_06050at 1347.640 kb on + strand, within AO353_06050at 1347.640 kb on + strand, within AO353_06050at 1347.798 kb on + strand, within AO353_06050at 1347.965 kb on + strand, within AO353_06050at 1348.139 kb on + strand, within AO353_06050at 1348.140 kb on - strand, within AO353_06050at 1348.438 kb on + strand, within AO353_06050at 1348.541 kb on + strand, within AO353_06050at 1348.735 kb on + strand, within AO353_06050at 1348.796 kb on - strand, within AO353_06050at 1348.796 kb on - strand, within AO353_06050at 1348.796 kb on - strand, within AO353_06050at 1348.830 kb on - strand, within AO353_06050at 1348.847 kb on + strand, within AO353_06050at 1348.848 kb on - strand, within AO353_06050at 1348.868 kb on + strand, within AO353_06050at 1348.869 kb on - strand, within AO353_06050at 1348.939 kb on + strand, within AO353_06050at 1348.976 kb on + strand, within AO353_06050at 1349.037 kb on + strand, within AO353_06050at 1349.140 kb on + strand, within AO353_06050at 1349.141 kb on - strand, within AO353_06050at 1349.415 kb on + strand, within AO353_06050at 1349.803 kb on - strandat 1349.803 kb on - strandat 1349.803 kb on - strandat 1349.803 kb on - strandat 1349.864 kb on + strandat 1349.864 kb on + strandat 1349.865 kb on - strandat 1349.865 kb on - strandat 1349.877 kb on + strandat 1349.877 kb on + strandat 1349.925 kb on + strandat 1349.925 kb on + strandat 1349.925 kb on + strandat 1349.926 kb on - strandat 1349.926 kb on - strandat 1349.926 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.32 mM
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1,345,561 + AO353_06045 0.78 -1.6
1,345,590 + AO353_06045 0.78 -0.8
1,346,284 - -0.9
1,346,361 - +0.2
1,346,492 + -0.6
1,346,492 + -1.5
1,346,659 - -1.1
1,346,736 + AO353_06050 0.10 -1.4
1,346,736 + AO353_06050 0.10 +0.7
1,347,333 - AO353_06050 0.28 -2.1
1,347,333 - AO353_06050 0.28 -0.4
1,347,333 - AO353_06050 0.28 +2.2
1,347,402 - AO353_06050 0.30 -0.4
1,347,402 - AO353_06050 0.30 +0.2
1,347,402 - AO353_06050 0.30 -1.4
1,347,602 + AO353_06050 0.35 +1.0
1,347,603 - AO353_06050 0.35 +0.2
1,347,603 - AO353_06050 0.35 -1.3
1,347,603 - AO353_06050 0.35 -1.4
1,347,640 + AO353_06050 0.36 -0.8
1,347,640 + AO353_06050 0.36 -1.4
1,347,798 + AO353_06050 0.41 -0.4
1,347,965 + AO353_06050 0.46 -1.8
1,348,139 + AO353_06050 0.51 -1.0
1,348,140 - AO353_06050 0.51 +0.4
1,348,438 + AO353_06050 0.60 -1.0
1,348,541 + AO353_06050 0.62 +1.2
1,348,735 + AO353_06050 0.68 -1.0
1,348,796 - AO353_06050 0.70 -1.4
1,348,796 - AO353_06050 0.70 -1.1
1,348,796 - AO353_06050 0.70 -0.0
1,348,830 - AO353_06050 0.71 -0.4
1,348,847 + AO353_06050 0.71 -0.6
1,348,848 - AO353_06050 0.71 -0.8
1,348,868 + AO353_06050 0.72 +0.6
1,348,869 - AO353_06050 0.72 -0.9
1,348,939 + AO353_06050 0.74 -1.4
1,348,976 + AO353_06050 0.75 -1.1
1,349,037 + AO353_06050 0.77 -1.1
1,349,140 + AO353_06050 0.80 -0.6
1,349,141 - AO353_06050 0.80 -1.0
1,349,415 + AO353_06050 0.88 +0.4
1,349,803 - +0.7
1,349,803 - -0.3
1,349,803 - -1.4
1,349,803 - +1.1
1,349,864 + -1.4
1,349,864 + -1.6
1,349,865 - +0.7
1,349,865 - -1.7
1,349,877 + -1.1
1,349,877 + -0.2
1,349,925 + -0.3
1,349,925 + +1.6
1,349,925 + -1.1
1,349,926 - +0.4
1,349,926 - -2.2
1,349,926 - -0.0

Or see this region's nucleotide sequence