Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02780

Experiment: Cobalt chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02770 and AO353_02775 are separated by 111 nucleotidesAO353_02775 and AO353_02780 are separated by 67 nucleotidesAO353_02780 and AO353_02785 are separated by 436 nucleotides AO353_02770: AO353_02770 - hypothetical protein, at 587,731 to 588,156 _02770 AO353_02775: AO353_02775 - 3-methyladenine DNA glycosylase, at 588,268 to 588,939 _02775 AO353_02780: AO353_02780 - tRNA 2-thiocytidine biosynthesis protein TtcA, at 589,007 to 589,831 _02780 AO353_02785: AO353_02785 - hypothetical protein, at 590,268 to 590,870 _02785 Position (kb) 589 590Strain fitness (log2 ratio) -2 -1 0 1 2 3at 588.092 kb on - strand, within AO353_02770at 588.092 kb on - strand, within AO353_02770at 588.092 kb on - strand, within AO353_02770at 588.092 kb on - strand, within AO353_02770at 588.092 kb on - strand, within AO353_02770at 588.092 kb on - strand, within AO353_02770at 588.092 kb on - strand, within AO353_02770at 588.092 kb on - strand, within AO353_02770at 588.092 kb on - strand, within AO353_02770at 588.092 kb on - strand, within AO353_02770at 588.092 kb on - strand, within AO353_02770at 588.120 kb on + strandat 588.120 kb on + strandat 588.120 kb on + strandat 588.120 kb on + strandat 588.121 kb on - strandat 588.121 kb on - strandat 588.121 kb on - strandat 588.181 kb on + strandat 588.181 kb on + strandat 588.182 kb on - strandat 588.200 kb on + strandat 588.215 kb on + strandat 588.223 kb on - strandat 588.230 kb on + strandat 588.230 kb on + strandat 588.231 kb on - strandat 588.231 kb on - strandat 588.284 kb on + strandat 588.284 kb on + strandat 588.284 kb on + strandat 588.284 kb on + strandat 588.284 kb on + strandat 588.285 kb on - strandat 588.302 kb on - strandat 588.431 kb on + strand, within AO353_02775at 588.431 kb on + strand, within AO353_02775at 588.432 kb on - strand, within AO353_02775at 588.432 kb on - strand, within AO353_02775at 588.432 kb on - strand, within AO353_02775at 588.432 kb on - strand, within AO353_02775at 588.432 kb on - strand, within AO353_02775at 588.432 kb on - strand, within AO353_02775at 588.518 kb on + strand, within AO353_02775at 588.518 kb on + strand, within AO353_02775at 588.518 kb on + strand, within AO353_02775at 588.518 kb on + strand, within AO353_02775at 588.519 kb on - strand, within AO353_02775at 588.815 kb on + strand, within AO353_02775at 588.911 kb on + strandat 588.912 kb on - strandat 588.912 kb on - strandat 588.912 kb on - strandat 588.912 kb on - strandat 588.929 kb on + strandat 588.930 kb on - strandat 588.930 kb on - strandat 588.930 kb on - strandat 588.930 kb on - strandat 588.962 kb on - strandat 589.258 kb on - strand, within AO353_02780at 589.280 kb on - strand, within AO353_02780at 589.284 kb on + strand, within AO353_02780at 589.284 kb on + strand, within AO353_02780at 589.284 kb on + strand, within AO353_02780at 589.284 kb on + strand, within AO353_02780at 589.284 kb on + strand, within AO353_02780at 589.284 kb on + strand, within AO353_02780at 589.285 kb on - strand, within AO353_02780at 589.304 kb on + strand, within AO353_02780at 589.304 kb on + strand, within AO353_02780at 589.304 kb on + strand, within AO353_02780at 589.304 kb on + strand, within AO353_02780at 589.305 kb on - strand, within AO353_02780at 589.305 kb on - strand, within AO353_02780at 589.305 kb on - strand, within AO353_02780at 589.305 kb on - strand, within AO353_02780at 589.305 kb on - strand, within AO353_02780at 589.305 kb on - strand, within AO353_02780at 589.305 kb on - strand, within AO353_02780at 589.305 kb on - strand, within AO353_02780at 589.305 kb on - strand, within AO353_02780at 589.310 kb on - strand, within AO353_02780at 589.362 kb on + strand, within AO353_02780at 589.362 kb on + strand, within AO353_02780at 589.362 kb on + strand, within AO353_02780at 589.362 kb on + strand, within AO353_02780at 589.363 kb on - strand, within AO353_02780at 589.363 kb on - strand, within AO353_02780at 589.363 kb on - strand, within AO353_02780at 589.452 kb on + strand, within AO353_02780at 589.452 kb on + strand, within AO353_02780at 589.452 kb on + strand, within AO353_02780at 589.452 kb on + strand, within AO353_02780at 589.452 kb on + strand, within AO353_02780at 589.452 kb on + strand, within AO353_02780at 589.453 kb on - strand, within AO353_02780at 589.453 kb on - strand, within AO353_02780at 589.453 kb on - strand, within AO353_02780at 589.453 kb on - strand, within AO353_02780at 589.453 kb on - strand, within AO353_02780at 589.453 kb on - strand, within AO353_02780at 589.453 kb on - strand, within AO353_02780at 589.530 kb on + strand, within AO353_02780at 589.530 kb on + strand, within AO353_02780at 589.530 kb on + strand, within AO353_02780at 589.530 kb on + strand, within AO353_02780at 589.531 kb on - strand, within AO353_02780at 589.531 kb on - strand, within AO353_02780at 589.531 kb on - strand, within AO353_02780at 589.531 kb on - strand, within AO353_02780at 589.531 kb on - strand, within AO353_02780at 589.531 kb on - strand, within AO353_02780at 589.531 kb on - strand, within AO353_02780at 589.555 kb on - strand, within AO353_02780at 589.555 kb on - strand, within AO353_02780at 589.578 kb on + strand, within AO353_02780at 589.579 kb on - strand, within AO353_02780at 589.579 kb on - strand, within AO353_02780at 589.695 kb on + strand, within AO353_02780at 589.695 kb on + strand, within AO353_02780at 589.695 kb on + strand, within AO353_02780at 589.695 kb on + strand, within AO353_02780at 589.695 kb on + strand, within AO353_02780at 589.695 kb on + strand, within AO353_02780at 589.695 kb on + strand, within AO353_02780at 589.695 kb on + strand, within AO353_02780at 589.695 kb on + strand, within AO353_02780at 589.695 kb on + strand, within AO353_02780at 589.696 kb on - strand, within AO353_02780at 589.696 kb on - strand, within AO353_02780at 589.696 kb on - strand, within AO353_02780at 589.696 kb on - strand, within AO353_02780at 589.696 kb on - strandat 589.696 kb on - strand, within AO353_02780at 589.696 kb on - strand, within AO353_02780at 589.696 kb on - strand, within AO353_02780at 589.696 kb on - strand, within AO353_02780at 589.696 kb on - strand, within AO353_02780at 589.696 kb on - strand, within AO353_02780at 589.755 kb on + strandat 589.755 kb on + strandat 589.755 kb on + strandat 589.755 kb on + strandat 589.756 kb on - strandat 589.788 kb on - strandat 589.873 kb on + strandat 589.873 kb on + strandat 589.932 kb on + strandat 589.932 kb on + strandat 589.932 kb on + strandat 589.932 kb on + strandat 589.980 kb on + strandat 589.980 kb on + strandat 589.980 kb on + strandat 589.993 kb on + strandat 589.994 kb on - strandat 590.024 kb on - strandat 590.110 kb on + strandat 590.111 kb on - strandat 590.127 kb on + strandat 590.154 kb on + strandat 590.155 kb on - strandat 590.155 kb on - strandat 590.155 kb on - strandat 590.161 kb on + strandat 590.161 kb on + strandat 590.161 kb on + strandat 590.161 kb on + strandat 590.161 kb on + strandat 590.162 kb on - strandat 590.162 kb on - strandat 590.162 kb on - strandat 590.162 kb on - strandat 590.164 kb on - strandat 590.174 kb on - strandat 590.198 kb on + strandat 590.198 kb on + strandat 590.198 kb on + strandat 590.198 kb on + strandat 590.198 kb on + strandat 590.198 kb on + strandat 590.199 kb on - strandat 590.199 kb on - strandat 590.199 kb on - strandat 590.202 kb on + strandat 590.202 kb on + strandat 590.202 kb on + strandat 590.202 kb on + strandat 590.202 kb on + strandat 590.202 kb on + strandat 590.202 kb on + strandat 590.202 kb on + strandat 590.202 kb on + strandat 590.202 kb on + strandat 590.202 kb on + strandat 590.202 kb on + strandat 590.203 kb on - strandat 590.203 kb on - strandat 590.203 kb on - strandat 590.220 kb on + strandat 590.267 kb on + strandat 590.267 kb on + strandat 590.267 kb on + strandat 590.268 kb on - strandat 590.345 kb on + strand, within AO353_02785at 590.345 kb on + strand, within AO353_02785at 590.346 kb on - strand, within AO353_02785at 590.346 kb on - strand, within AO353_02785at 590.346 kb on - strand, within AO353_02785at 590.346 kb on - strand, within AO353_02785at 590.346 kb on - strand, within AO353_02785at 590.358 kb on + strand, within AO353_02785at 590.358 kb on + strand, within AO353_02785at 590.358 kb on + strand, within AO353_02785at 590.358 kb on + strand, within AO353_02785at 590.358 kb on + strand, within AO353_02785at 590.358 kb on + strand, within AO353_02785at 590.358 kb on + strand, within AO353_02785at 590.358 kb on + strand, within AO353_02785at 590.358 kb on + strand, within AO353_02785at 590.358 kb on + strand, within AO353_02785at 590.359 kb on - strand, within AO353_02785at 590.359 kb on - strand, within AO353_02785at 590.359 kb on - strand, within AO353_02785at 590.359 kb on - strand, within AO353_02785at 590.359 kb on - strand, within AO353_02785at 590.359 kb on - strand, within AO353_02785at 590.499 kb on + strand, within AO353_02785at 590.500 kb on - strand, within AO353_02785at 590.500 kb on - strand, within AO353_02785at 590.500 kb on - strand, within AO353_02785at 590.562 kb on + strand, within AO353_02785at 590.562 kb on + strand, within AO353_02785at 590.562 kb on + strand, within AO353_02785at 590.563 kb on - strand, within AO353_02785at 590.563 kb on - strand, within AO353_02785at 590.563 kb on - strand, within AO353_02785at 590.563 kb on - strand, within AO353_02785at 590.607 kb on + strand, within AO353_02785at 590.607 kb on + strand, within AO353_02785at 590.607 kb on + strand, within AO353_02785at 590.607 kb on + strand, within AO353_02785at 590.607 kb on + strand, within AO353_02785at 590.607 kb on + strand, within AO353_02785at 590.607 kb on + strand, within AO353_02785at 590.607 kb on + strand, within AO353_02785at 590.608 kb on - strand, within AO353_02785at 590.608 kb on - strand, within AO353_02785at 590.608 kb on - strand, within AO353_02785at 590.608 kb on - strand, within AO353_02785at 590.608 kb on - strand, within AO353_02785at 590.608 kb on - strand, within AO353_02785at 590.608 kb on - strand, within AO353_02785at 590.608 kb on - strand, within AO353_02785at 590.608 kb on - strand, within AO353_02785at 590.608 kb on - strand, within AO353_02785at 590.697 kb on + strand, within AO353_02785at 590.698 kb on - strand, within AO353_02785at 590.706 kb on + strand, within AO353_02785at 590.706 kb on + strand, within AO353_02785at 590.707 kb on - strand, within AO353_02785at 590.707 kb on - strand, within AO353_02785at 590.707 kb on - strand, within AO353_02785at 590.707 kb on - strand, within AO353_02785at 590.707 kb on - strand, within AO353_02785at 590.707 kb on - strand, within AO353_02785at 590.707 kb on - strand, within AO353_02785at 590.715 kb on + strand, within AO353_02785at 590.715 kb on + strand, within AO353_02785at 590.715 kb on + strand, within AO353_02785at 590.715 kb on + strand, within AO353_02785at 590.715 kb on + strand, within AO353_02785at 590.715 kb on + strand, within AO353_02785at 590.715 kb on + strand, within AO353_02785at 590.715 kb on + strand, within AO353_02785at 590.716 kb on - strand, within AO353_02785at 590.716 kb on - strand, within AO353_02785at 590.716 kb on - strand, within AO353_02785at 590.716 kb on - strand, within AO353_02785at 590.716 kb on - strand, within AO353_02785at 590.716 kb on - strand, within AO353_02785

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.32 mM
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588,092 - AO353_02770 0.85 +1.1
588,092 - AO353_02770 0.85 +0.5
588,092 - AO353_02770 0.85 +0.3
588,092 - AO353_02770 0.85 +0.9
588,092 - AO353_02770 0.85 -0.9
588,092 - AO353_02770 0.85 -1.6
588,092 - AO353_02770 0.85 +0.7
588,092 - AO353_02770 0.85 +0.0
588,092 - AO353_02770 0.85 +1.9
588,092 - AO353_02770 0.85 -0.1
588,092 - AO353_02770 0.85 -0.3
588,120 + +0.2
588,120 + +1.0
588,120 + +1.3
588,120 + +0.7
588,121 - -1.8
588,121 - -1.1
588,121 - +0.8
588,181 + -0.5
588,181 + +0.1
588,182 - -0.3
588,200 + +1.3
588,215 + -0.4
588,223 - +0.7
588,230 + -1.2
588,230 + -1.3
588,231 - +0.6
588,231 - -0.5
588,284 + -0.2
588,284 + -1.5
588,284 + -0.7
588,284 + +1.1
588,284 + -1.7
588,285 - +0.6
588,302 - -0.6
588,431 + AO353_02775 0.24 -0.1
588,431 + AO353_02775 0.24 -1.3
588,432 - AO353_02775 0.24 +2.1
588,432 - AO353_02775 0.24 +0.9
588,432 - AO353_02775 0.24 -0.7
588,432 - AO353_02775 0.24 +0.7
588,432 - AO353_02775 0.24 -1.6
588,432 - AO353_02775 0.24 -0.4
588,518 + AO353_02775 0.37 -0.7
588,518 + AO353_02775 0.37 -0.2
588,518 + AO353_02775 0.37 -1.3
588,518 + AO353_02775 0.37 -1.0
588,519 - AO353_02775 0.37 -0.6
588,815 + AO353_02775 0.81 +0.8
588,911 + +0.3
588,912 - +0.5
588,912 - -0.3
588,912 - -1.2
588,912 - +0.4
588,929 + +0.5
588,930 - +0.1
588,930 - +2.3
588,930 - +1.3
588,930 - +0.3
588,962 - +1.7
589,258 - AO353_02780 0.30 +0.3
589,280 - AO353_02780 0.33 -1.1
589,284 + AO353_02780 0.34 -0.4
589,284 + AO353_02780 0.34 -1.1
589,284 + AO353_02780 0.34 -0.8
589,284 + AO353_02780 0.34 -0.1
589,284 + AO353_02780 0.34 -0.3
589,284 + AO353_02780 0.34 -0.2
589,285 - AO353_02780 0.34 -0.3
589,304 + AO353_02780 0.36 -0.7
589,304 + AO353_02780 0.36 -0.5
589,304 + AO353_02780 0.36 +0.4
589,304 + AO353_02780 0.36 -1.5
589,305 - AO353_02780 0.36 -1.1
589,305 - AO353_02780 0.36 -1.3
589,305 - AO353_02780 0.36 -0.3
589,305 - AO353_02780 0.36 +0.1
589,305 - AO353_02780 0.36 +0.1
589,305 - AO353_02780 0.36 +1.3
589,305 - AO353_02780 0.36 +0.2
589,305 - AO353_02780 0.36 -0.4
589,305 - AO353_02780 0.36 -0.3
589,310 - AO353_02780 0.37 -1.2
589,362 + AO353_02780 0.43 -0.1
589,362 + AO353_02780 0.43 -0.3
589,362 + AO353_02780 0.43 -0.3
589,362 + AO353_02780 0.43 +0.8
589,363 - AO353_02780 0.43 -0.1
589,363 - AO353_02780 0.43 -2.0
589,363 - AO353_02780 0.43 -0.1
589,452 + AO353_02780 0.54 -0.7
589,452 + AO353_02780 0.54 +0.1
589,452 + AO353_02780 0.54 +0.0
589,452 + AO353_02780 0.54 -1.2
589,452 + AO353_02780 0.54 -1.3
589,452 + AO353_02780 0.54 +0.1
589,453 - AO353_02780 0.54 +0.7
589,453 - AO353_02780 0.54 +1.0
589,453 - AO353_02780 0.54 +0.8
589,453 - AO353_02780 0.54 -0.1
589,453 - AO353_02780 0.54 -1.3
589,453 - AO353_02780 0.54 +0.4
589,453 - AO353_02780 0.54 +0.0
589,530 + AO353_02780 0.63 +1.5
589,530 + AO353_02780 0.63 +0.9
589,530 + AO353_02780 0.63 +0.1
589,530 + AO353_02780 0.63 +0.8
589,531 - AO353_02780 0.64 +0.1
589,531 - AO353_02780 0.64 +0.5
589,531 - AO353_02780 0.64 -1.2
589,531 - AO353_02780 0.64 +0.5
589,531 - AO353_02780 0.64 +0.1
589,531 - AO353_02780 0.64 +0.0
589,531 - AO353_02780 0.64 +0.7
589,555 - AO353_02780 0.66 +2.1
589,555 - AO353_02780 0.66 +1.7
589,578 + AO353_02780 0.69 -0.5
589,579 - AO353_02780 0.69 +0.4
589,579 - AO353_02780 0.69 +0.4
589,695 + AO353_02780 0.83 -0.9
589,695 + AO353_02780 0.83 -0.9
589,695 + AO353_02780 0.83 -1.1
589,695 + AO353_02780 0.83 -0.5
589,695 + AO353_02780 0.83 +0.5
589,695 + AO353_02780 0.83 -0.5
589,695 + AO353_02780 0.83 -0.5
589,695 + AO353_02780 0.83 -1.9
589,695 + AO353_02780 0.83 -1.6
589,695 + AO353_02780 0.83 -2.1
589,696 - AO353_02780 0.84 -1.2
589,696 - AO353_02780 0.84 -1.0
589,696 - AO353_02780 0.84 +0.9
589,696 - AO353_02780 0.84 -1.1
589,696 - +3.0
589,696 - AO353_02780 0.84 -2.1
589,696 - AO353_02780 0.84 -1.3
589,696 - AO353_02780 0.84 -0.1
589,696 - AO353_02780 0.84 +0.7
589,696 - AO353_02780 0.84 +0.3
589,696 - AO353_02780 0.84 -0.7
589,755 + -0.3
589,755 + +0.5
589,755 + -2.3
589,755 + -0.0
589,756 - +0.6
589,788 - -0.5
589,873 + +0.8
589,873 + -0.3
589,932 + -1.8
589,932 + -1.2
589,932 + -0.4
589,932 + +1.3
589,980 + +0.6
589,980 + +0.9
589,980 + +0.1
589,993 + -0.8
589,994 - -1.1
590,024 - -1.1
590,110 + -0.3
590,111 - +0.5
590,127 + +0.3
590,154 + +0.3
590,155 - +1.2
590,155 - +0.3
590,155 - +0.5
590,161 + +1.3
590,161 + -2.2
590,161 + +1.5
590,161 + -0.1
590,161 + -0.1
590,162 - +0.7
590,162 - +0.0
590,162 - -1.2
590,162 - +0.2
590,164 - +0.0
590,174 - +0.7
590,198 + -0.7
590,198 + -1.1
590,198 + +0.3
590,198 + -1.0
590,198 + -1.1
590,198 + -1.3
590,199 - -0.1
590,199 - -0.9
590,199 - +1.4
590,202 + +0.3
590,202 + -1.4
590,202 + -1.1
590,202 + -0.9
590,202 + -0.4
590,202 + -0.5
590,202 + -0.4
590,202 + -0.7
590,202 + +0.1
590,202 + +1.1
590,202 + -1.1
590,202 + +0.2
590,203 - +0.3
590,203 - +1.2
590,203 - +2.0
590,220 + -0.3
590,267 + +1.1
590,267 + -0.6
590,267 + -0.2
590,268 - -1.5
590,345 + AO353_02785 0.13 -0.1
590,345 + AO353_02785 0.13 -1.4
590,346 - AO353_02785 0.13 -0.4
590,346 - AO353_02785 0.13 -0.8
590,346 - AO353_02785 0.13 -1.1
590,346 - AO353_02785 0.13 -2.1
590,346 - AO353_02785 0.13 +0.7
590,358 + AO353_02785 0.15 +0.7
590,358 + AO353_02785 0.15 +0.3
590,358 + AO353_02785 0.15 +0.6
590,358 + AO353_02785 0.15 -0.7
590,358 + AO353_02785 0.15 -0.3
590,358 + AO353_02785 0.15 -1.9
590,358 + AO353_02785 0.15 +1.1
590,358 + AO353_02785 0.15 +0.2
590,358 + AO353_02785 0.15 +1.0
590,358 + AO353_02785 0.15 -0.5
590,359 - AO353_02785 0.15 -1.2
590,359 - AO353_02785 0.15 -0.2
590,359 - AO353_02785 0.15 +0.3
590,359 - AO353_02785 0.15 -0.1
590,359 - AO353_02785 0.15 -0.2
590,359 - AO353_02785 0.15 +1.4
590,499 + AO353_02785 0.38 +0.6
590,500 - AO353_02785 0.38 +0.5
590,500 - AO353_02785 0.38 -1.1
590,500 - AO353_02785 0.38 -0.4
590,562 + AO353_02785 0.49 -1.7
590,562 + AO353_02785 0.49 +0.9
590,562 + AO353_02785 0.49 +0.1
590,563 - AO353_02785 0.49 -0.0
590,563 - AO353_02785 0.49 -0.4
590,563 - AO353_02785 0.49 -0.2
590,563 - AO353_02785 0.49 +0.4
590,607 + AO353_02785 0.56 -1.4
590,607 + AO353_02785 0.56 -1.4
590,607 + AO353_02785 0.56 +0.3
590,607 + AO353_02785 0.56 -0.2
590,607 + AO353_02785 0.56 -0.8
590,607 + AO353_02785 0.56 -0.2
590,607 + AO353_02785 0.56 +0.7
590,607 + AO353_02785 0.56 -0.6
590,608 - AO353_02785 0.56 -1.4
590,608 - AO353_02785 0.56 +1.3
590,608 - AO353_02785 0.56 -0.5
590,608 - AO353_02785 0.56 +0.9
590,608 - AO353_02785 0.56 +0.7
590,608 - AO353_02785 0.56 +0.4
590,608 - AO353_02785 0.56 -0.3
590,608 - AO353_02785 0.56 -1.1
590,608 - AO353_02785 0.56 -0.2
590,608 - AO353_02785 0.56 -0.3
590,697 + AO353_02785 0.71 -0.2
590,698 - AO353_02785 0.71 +0.7
590,706 + AO353_02785 0.73 -1.1
590,706 + AO353_02785 0.73 +0.2
590,707 - AO353_02785 0.73 +0.3
590,707 - AO353_02785 0.73 -0.7
590,707 - AO353_02785 0.73 -0.5
590,707 - AO353_02785 0.73 -0.5
590,707 - AO353_02785 0.73 -0.8
590,707 - AO353_02785 0.73 -0.6
590,707 - AO353_02785 0.73 +0.6
590,715 + AO353_02785 0.74 -1.9
590,715 + AO353_02785 0.74 +0.2
590,715 + AO353_02785 0.74 -0.1
590,715 + AO353_02785 0.74 +0.8
590,715 + AO353_02785 0.74 -0.9
590,715 + AO353_02785 0.74 +0.4
590,715 + AO353_02785 0.74 +0.0
590,715 + AO353_02785 0.74 -0.5
590,716 - AO353_02785 0.74 +0.3
590,716 - AO353_02785 0.74 -0.1
590,716 - AO353_02785 0.74 -1.1
590,716 - AO353_02785 0.74 -1.0
590,716 - AO353_02785 0.74 -0.1
590,716 - AO353_02785 0.74 +1.0

Or see this region's nucleotide sequence