Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_001555

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_001554 and ABIE53_001555 are separated by 28 nucleotidesABIE53_001555 and ABIE53_001556 are separated by 142 nucleotides ABIE53_001554: ABIE53_001554 - K+-transporting ATPase ATPase B chain, at 1,729,912 to 1,732,035 _001554 ABIE53_001555: ABIE53_001555 - K+-transporting ATPase ATPase C chain, at 1,732,064 to 1,732,642 _001555 ABIE53_001556: ABIE53_001556 - two-component system sensor histidine kinase KdpD, at 1,732,785 to 1,735,673 _001556 Position (kb) 1732 1733Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1731.184 kb on + strand, within ABIE53_001554at 1731.894 kb on - strandat 1731.894 kb on - strandat 1732.093 kb on + strandat 1732.256 kb on + strand, within ABIE53_001555at 1732.257 kb on - strand, within ABIE53_001555at 1732.257 kb on - strand, within ABIE53_001555at 1732.257 kb on - strand, within ABIE53_001555at 1732.296 kb on - strand, within ABIE53_001555at 1732.296 kb on - strand, within ABIE53_001555at 1732.296 kb on - strand, within ABIE53_001555at 1732.297 kb on + strand, within ABIE53_001555at 1732.481 kb on + strand, within ABIE53_001555at 1732.550 kb on + strand, within ABIE53_001555at 1732.551 kb on - strand, within ABIE53_001555at 1732.552 kb on + strand, within ABIE53_001555at 1732.552 kb on + strand, within ABIE53_001555at 1732.553 kb on - strand, within ABIE53_001555at 1732.553 kb on - strand, within ABIE53_001555at 1732.899 kb on + strandat 1732.899 kb on + strandat 1732.899 kb on + strandat 1732.899 kb on + strandat 1732.899 kb on + strandat 1732.899 kb on + strandat 1732.899 kb on + strandat 1732.900 kb on - strandat 1733.101 kb on + strand, within ABIE53_001556at 1733.101 kb on + strand, within ABIE53_001556at 1733.102 kb on - strand, within ABIE53_001556at 1733.102 kb on - strand, within ABIE53_001556at 1733.169 kb on + strand, within ABIE53_001556at 1733.169 kb on + strand, within ABIE53_001556at 1733.199 kb on + strand, within ABIE53_001556at 1733.199 kb on + strand, within ABIE53_001556at 1733.200 kb on - strand, within ABIE53_001556at 1733.200 kb on - strand, within ABIE53_001556at 1733.200 kb on - strand, within ABIE53_001556at 1733.373 kb on + strand, within ABIE53_001556at 1733.373 kb on + strand, within ABIE53_001556at 1733.373 kb on + strand, within ABIE53_001556at 1733.373 kb on + strand, within ABIE53_001556at 1733.373 kb on + strand, within ABIE53_001556at 1733.373 kb on + strand, within ABIE53_001556at 1733.373 kb on + strand, within ABIE53_001556at 1733.374 kb on - strand, within ABIE53_001556at 1733.374 kb on - strand, within ABIE53_001556at 1733.374 kb on - strand, within ABIE53_001556at 1733.374 kb on - strand, within ABIE53_001556at 1733.637 kb on + strand, within ABIE53_001556at 1733.637 kb on + strand, within ABIE53_001556at 1733.637 kb on + strand, within ABIE53_001556at 1733.638 kb on - strand, within ABIE53_001556

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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1,731,184 + ABIE53_001554 0.60 -0.5
1,731,894 - +1.2
1,731,894 - +2.8
1,732,093 + -0.6
1,732,256 + ABIE53_001555 0.33 -0.9
1,732,257 - ABIE53_001555 0.33 +3.2
1,732,257 - ABIE53_001555 0.33 -0.2
1,732,257 - ABIE53_001555 0.33 +0.4
1,732,296 - ABIE53_001555 0.40 +0.1
1,732,296 - ABIE53_001555 0.40 -2.2
1,732,296 - ABIE53_001555 0.40 +1.2
1,732,297 + ABIE53_001555 0.40 +2.6
1,732,481 + ABIE53_001555 0.72 -0.4
1,732,550 + ABIE53_001555 0.84 -1.1
1,732,551 - ABIE53_001555 0.84 +0.0
1,732,552 + ABIE53_001555 0.84 +3.6
1,732,552 + ABIE53_001555 0.84 -1.1
1,732,553 - ABIE53_001555 0.84 -0.4
1,732,553 - ABIE53_001555 0.84 +2.5
1,732,899 + -0.5
1,732,899 + -0.8
1,732,899 + -0.9
1,732,899 + +0.9
1,732,899 + -0.2
1,732,899 + -2.2
1,732,899 + -1.6
1,732,900 - -0.4
1,733,101 + ABIE53_001556 0.11 -1.6
1,733,101 + ABIE53_001556 0.11 +1.2
1,733,102 - ABIE53_001556 0.11 -0.4
1,733,102 - ABIE53_001556 0.11 +0.8
1,733,169 + ABIE53_001556 0.13 +0.2
1,733,169 + ABIE53_001556 0.13 -0.6
1,733,199 + ABIE53_001556 0.14 +0.4
1,733,199 + ABIE53_001556 0.14 -0.0
1,733,200 - ABIE53_001556 0.14 -0.6
1,733,200 - ABIE53_001556 0.14 -0.4
1,733,200 - ABIE53_001556 0.14 -2.6
1,733,373 + ABIE53_001556 0.20 -0.5
1,733,373 + ABIE53_001556 0.20 -1.4
1,733,373 + ABIE53_001556 0.20 -1.4
1,733,373 + ABIE53_001556 0.20 +0.6
1,733,373 + ABIE53_001556 0.20 -2.2
1,733,373 + ABIE53_001556 0.20 +2.2
1,733,373 + ABIE53_001556 0.20 -0.4
1,733,374 - ABIE53_001556 0.20 +0.2
1,733,374 - ABIE53_001556 0.20 +0.6
1,733,374 - ABIE53_001556 0.20 +0.2
1,733,374 - ABIE53_001556 0.20 +0.1
1,733,637 + ABIE53_001556 0.29 -0.7
1,733,637 + ABIE53_001556 0.29 +0.1
1,733,637 + ABIE53_001556 0.29 -0.1
1,733,638 - ABIE53_001556 0.30 -0.6

Or see this region's nucleotide sequence