Strain Fitness in Pantoea sp. MT58 around IAI47_04875

Experiment: Nickel (II) chloride 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_04870 and IAI47_04875 are separated by 9 nucleotidesIAI47_04875 and IAI47_04880 are separated by 131 nucleotidesIAI47_04880 and IAI47_04885 are separated by 145 nucleotides IAI47_04870: IAI47_04870 - elongation factor 4, at 1,021,108 to 1,022,907 _04870 IAI47_04875: IAI47_04875 - signal peptidase I, at 1,022,917 to 1,023,891 _04875 IAI47_04880: IAI47_04880 - ribonuclease III, at 1,024,023 to 1,024,703 _04880 IAI47_04885: IAI47_04885 - GTPase Era, at 1,024,849 to 1,025,754 _04885 Position (kb) 1022 1023 1024Strain fitness (log2 ratio) -2 -1 0 1 2at 1021.993 kb on + strand, within IAI47_04870at 1022.026 kb on + strand, within IAI47_04870at 1022.221 kb on + strand, within IAI47_04870at 1022.221 kb on + strand, within IAI47_04870at 1022.271 kb on + strand, within IAI47_04870at 1022.271 kb on + strand, within IAI47_04870at 1022.271 kb on + strand, within IAI47_04870at 1022.271 kb on + strand, within IAI47_04870at 1022.292 kb on + strand, within IAI47_04870at 1022.347 kb on + strand, within IAI47_04870at 1022.373 kb on + strand, within IAI47_04870at 1022.407 kb on + strand, within IAI47_04870at 1022.407 kb on + strand, within IAI47_04870at 1022.434 kb on + strand, within IAI47_04870at 1022.523 kb on + strand, within IAI47_04870at 1022.523 kb on + strand, within IAI47_04870at 1022.561 kb on + strand, within IAI47_04870at 1022.753 kb on + strandat 1022.767 kb on + strandat 1022.829 kb on + strandat 1022.829 kb on + strandat 1022.829 kb on + strandat 1022.829 kb on + strandat 1022.892 kb on + strandat 1022.892 kb on + strandat 1022.905 kb on + strandat 1022.905 kb on + strandat 1023.852 kb on + strandat 1023.906 kb on + strandat 1023.906 kb on + strandat 1023.906 kb on + strandat 1023.985 kb on + strandat 1023.985 kb on + strandat 1024.690 kb on + strandat 1024.690 kb on + strandat 1024.701 kb on + strandat 1024.701 kb on + strandat 1024.801 kb on + strandat 1024.801 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 20 uM, anaerobic
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1,021,993 + IAI47_04870 0.49 +1.5
1,022,026 + IAI47_04870 0.51 +0.3
1,022,221 + IAI47_04870 0.62 -1.1
1,022,221 + IAI47_04870 0.62 +0.1
1,022,271 + IAI47_04870 0.65 -0.4
1,022,271 + IAI47_04870 0.65 +0.6
1,022,271 + IAI47_04870 0.65 -1.6
1,022,271 + IAI47_04870 0.65 +0.8
1,022,292 + IAI47_04870 0.66 -1.1
1,022,347 + IAI47_04870 0.69 +0.7
1,022,373 + IAI47_04870 0.70 +0.3
1,022,407 + IAI47_04870 0.72 +0.3
1,022,407 + IAI47_04870 0.72 +0.2
1,022,434 + IAI47_04870 0.74 -0.6
1,022,523 + IAI47_04870 0.79 -0.8
1,022,523 + IAI47_04870 0.79 -0.0
1,022,561 + IAI47_04870 0.81 -0.3
1,022,753 + -0.1
1,022,767 + -0.5
1,022,829 + -1.4
1,022,829 + -0.3
1,022,829 + -0.6
1,022,829 + -1.4
1,022,892 + +1.2
1,022,892 + -0.1
1,022,905 + -0.2
1,022,905 + -0.3
1,023,852 + -0.2
1,023,906 + -0.9
1,023,906 + +0.5
1,023,906 + -0.9
1,023,985 + -2.2
1,023,985 + +1.0
1,024,690 + +1.6
1,024,690 + +1.0
1,024,701 + +1.9
1,024,701 + +1.4
1,024,801 + -0.3
1,024,801 + -0.4

Or see this region's nucleotide sequence