Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14565

Experiment: Beta-Lactose 20 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS14570 and HMPREF1058_RS14565 are separated by 131 nucleotidesHMPREF1058_RS14565 and HMPREF1058_RS14560 are separated by 93 nucleotides HMPREF1058_RS14570: HMPREF1058_RS14570 - AhpC/TSA family protein, at 1,167,587 to 1,168,732 _RS14570 HMPREF1058_RS14565: HMPREF1058_RS14565 - 3-isopropylmalate dehydrogenase, at 1,168,864 to 1,169,925 _RS14565 HMPREF1058_RS14560: HMPREF1058_RS14560 - 2-isopropylmalate synthase, at 1,170,019 to 1,171,566 _RS14560 Position (kb) 1168 1169 1170Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1167.915 kb on + strand, within HMPREF1058_RS14570at 1167.915 kb on + strand, within HMPREF1058_RS14570at 1167.915 kb on + strand, within HMPREF1058_RS14570at 1167.916 kb on - strand, within HMPREF1058_RS14570at 1167.916 kb on - strand, within HMPREF1058_RS14570at 1167.920 kb on - strand, within HMPREF1058_RS14570at 1168.061 kb on + strand, within HMPREF1058_RS14570at 1168.062 kb on - strand, within HMPREF1058_RS14570at 1168.106 kb on - strand, within HMPREF1058_RS14570at 1168.106 kb on - strand, within HMPREF1058_RS14570at 1168.106 kb on - strand, within HMPREF1058_RS14570at 1168.146 kb on - strand, within HMPREF1058_RS14570at 1168.146 kb on - strand, within HMPREF1058_RS14570at 1168.149 kb on + strand, within HMPREF1058_RS14570at 1168.150 kb on - strand, within HMPREF1058_RS14570at 1168.151 kb on + strand, within HMPREF1058_RS14570at 1168.157 kb on + strand, within HMPREF1058_RS14570at 1168.158 kb on - strand, within HMPREF1058_RS14570at 1168.158 kb on - strand, within HMPREF1058_RS14570at 1168.186 kb on - strand, within HMPREF1058_RS14570at 1168.244 kb on - strand, within HMPREF1058_RS14570at 1168.262 kb on + strand, within HMPREF1058_RS14570at 1168.292 kb on + strand, within HMPREF1058_RS14570at 1168.312 kb on + strand, within HMPREF1058_RS14570at 1168.318 kb on + strand, within HMPREF1058_RS14570at 1168.320 kb on + strand, within HMPREF1058_RS14570at 1168.327 kb on + strand, within HMPREF1058_RS14570at 1168.349 kb on - strand, within HMPREF1058_RS14570at 1168.349 kb on - strand, within HMPREF1058_RS14570at 1168.351 kb on - strand, within HMPREF1058_RS14570at 1168.359 kb on + strand, within HMPREF1058_RS14570at 1168.382 kb on - strand, within HMPREF1058_RS14570at 1168.412 kb on - strand, within HMPREF1058_RS14570at 1168.463 kb on + strand, within HMPREF1058_RS14570at 1168.463 kb on + strand, within HMPREF1058_RS14570at 1168.465 kb on + strand, within HMPREF1058_RS14570at 1168.466 kb on - strand, within HMPREF1058_RS14570at 1168.536 kb on - strand, within HMPREF1058_RS14570at 1168.540 kb on + strand, within HMPREF1058_RS14570at 1168.541 kb on - strand, within HMPREF1058_RS14570at 1168.616 kb on + strand, within HMPREF1058_RS14570at 1168.627 kb on + strandat 1168.717 kb on - strandat 1168.752 kb on + strandat 1168.752 kb on + strandat 1168.779 kb on + strandat 1168.779 kb on + strandat 1168.916 kb on + strandat 1168.979 kb on - strand, within HMPREF1058_RS14565at 1169.197 kb on - strand, within HMPREF1058_RS14565at 1169.280 kb on + strand, within HMPREF1058_RS14565at 1169.281 kb on - strand, within HMPREF1058_RS14565at 1169.282 kb on + strand, within HMPREF1058_RS14565at 1169.282 kb on + strand, within HMPREF1058_RS14565at 1169.283 kb on - strand, within HMPREF1058_RS14565at 1169.374 kb on + strand, within HMPREF1058_RS14565at 1169.375 kb on - strand, within HMPREF1058_RS14565at 1169.380 kb on - strand, within HMPREF1058_RS14565at 1169.451 kb on - strand, within HMPREF1058_RS14565at 1169.451 kb on - strand, within HMPREF1058_RS14565at 1169.451 kb on - strand, within HMPREF1058_RS14565at 1169.451 kb on - strand, within HMPREF1058_RS14565at 1169.454 kb on + strand, within HMPREF1058_RS14565at 1169.455 kb on - strand, within HMPREF1058_RS14565at 1169.455 kb on - strand, within HMPREF1058_RS14565at 1169.455 kb on - strand, within HMPREF1058_RS14565at 1169.455 kb on - strand, within HMPREF1058_RS14565at 1169.466 kb on - strand, within HMPREF1058_RS14565at 1169.501 kb on + strand, within HMPREF1058_RS14565at 1169.502 kb on - strand, within HMPREF1058_RS14565at 1169.502 kb on - strand, within HMPREF1058_RS14565at 1169.502 kb on - strand, within HMPREF1058_RS14565at 1169.532 kb on + strand, within HMPREF1058_RS14565at 1169.533 kb on - strand, within HMPREF1058_RS14565at 1169.575 kb on - strand, within HMPREF1058_RS14565at 1169.695 kb on - strand, within HMPREF1058_RS14565at 1169.774 kb on - strand, within HMPREF1058_RS14565at 1169.813 kb on + strand, within HMPREF1058_RS14565at 1169.818 kb on + strand, within HMPREF1058_RS14565at 1169.819 kb on - strandat 1169.963 kb on - strandat 1170.049 kb on + strandat 1170.052 kb on + strandat 1170.053 kb on - strandat 1170.149 kb on - strandat 1170.151 kb on + strandat 1170.152 kb on - strandat 1170.192 kb on + strand, within HMPREF1058_RS14560at 1170.193 kb on - strand, within HMPREF1058_RS14560at 1170.244 kb on - strand, within HMPREF1058_RS14560at 1170.334 kb on + strand, within HMPREF1058_RS14560at 1170.376 kb on - strand, within HMPREF1058_RS14560at 1170.435 kb on + strand, within HMPREF1058_RS14560at 1170.504 kb on + strand, within HMPREF1058_RS14560at 1170.505 kb on - strand, within HMPREF1058_RS14560at 1170.505 kb on - strand, within HMPREF1058_RS14560at 1170.591 kb on - strand, within HMPREF1058_RS14560at 1170.877 kb on - strand, within HMPREF1058_RS14560at 1170.877 kb on - strand, within HMPREF1058_RS14560

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose 20 mM (C)
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1,167,915 + HMPREF1058_RS14570 0.29 -1.0
1,167,915 + HMPREF1058_RS14570 0.29 -1.0
1,167,915 + HMPREF1058_RS14570 0.29 -1.4
1,167,916 - HMPREF1058_RS14570 0.29 -0.5
1,167,916 - HMPREF1058_RS14570 0.29 +1.0
1,167,920 - HMPREF1058_RS14570 0.29 -0.4
1,168,061 + HMPREF1058_RS14570 0.41 -0.6
1,168,062 - HMPREF1058_RS14570 0.41 +0.4
1,168,106 - HMPREF1058_RS14570 0.45 -1.1
1,168,106 - HMPREF1058_RS14570 0.45 -0.4
1,168,106 - HMPREF1058_RS14570 0.45 -0.9
1,168,146 - HMPREF1058_RS14570 0.49 -0.5
1,168,146 - HMPREF1058_RS14570 0.49 -0.2
1,168,149 + HMPREF1058_RS14570 0.49 -1.1
1,168,150 - HMPREF1058_RS14570 0.49 -0.3
1,168,151 + HMPREF1058_RS14570 0.49 -0.3
1,168,157 + HMPREF1058_RS14570 0.50 +1.2
1,168,158 - HMPREF1058_RS14570 0.50 -0.1
1,168,158 - HMPREF1058_RS14570 0.50 -0.3
1,168,186 - HMPREF1058_RS14570 0.52 +0.7
1,168,244 - HMPREF1058_RS14570 0.57 +0.4
1,168,262 + HMPREF1058_RS14570 0.59 -2.0
1,168,292 + HMPREF1058_RS14570 0.62 -1.3
1,168,312 + HMPREF1058_RS14570 0.63 -1.2
1,168,318 + HMPREF1058_RS14570 0.64 -0.6
1,168,320 + HMPREF1058_RS14570 0.64 -0.3
1,168,327 + HMPREF1058_RS14570 0.65 +0.7
1,168,349 - HMPREF1058_RS14570 0.66 -0.0
1,168,349 - HMPREF1058_RS14570 0.66 +0.1
1,168,351 - HMPREF1058_RS14570 0.67 +1.2
1,168,359 + HMPREF1058_RS14570 0.67 -0.1
1,168,382 - HMPREF1058_RS14570 0.69 -0.9
1,168,412 - HMPREF1058_RS14570 0.72 -0.4
1,168,463 + HMPREF1058_RS14570 0.76 -0.5
1,168,463 + HMPREF1058_RS14570 0.76 -1.8
1,168,465 + HMPREF1058_RS14570 0.77 -0.1
1,168,466 - HMPREF1058_RS14570 0.77 -0.3
1,168,536 - HMPREF1058_RS14570 0.83 +0.2
1,168,540 + HMPREF1058_RS14570 0.83 -1.7
1,168,541 - HMPREF1058_RS14570 0.83 -0.1
1,168,616 + HMPREF1058_RS14570 0.90 -0.5
1,168,627 + +0.1
1,168,717 - -0.2
1,168,752 + -0.8
1,168,752 + -1.8
1,168,779 + -0.3
1,168,779 + -0.5
1,168,916 + -4.6
1,168,979 - HMPREF1058_RS14565 0.11 -5.5
1,169,197 - HMPREF1058_RS14565 0.31 -4.1
1,169,280 + HMPREF1058_RS14565 0.39 -1.8
1,169,281 - HMPREF1058_RS14565 0.39 -4.6
1,169,282 + HMPREF1058_RS14565 0.39 -4.4
1,169,282 + HMPREF1058_RS14565 0.39 -5.2
1,169,283 - HMPREF1058_RS14565 0.39 -2.0
1,169,374 + HMPREF1058_RS14565 0.48 -5.3
1,169,375 - HMPREF1058_RS14565 0.48 -3.8
1,169,380 - HMPREF1058_RS14565 0.49 -3.7
1,169,451 - HMPREF1058_RS14565 0.55 -3.0
1,169,451 - HMPREF1058_RS14565 0.55 -4.2
1,169,451 - HMPREF1058_RS14565 0.55 -4.9
1,169,451 - HMPREF1058_RS14565 0.55 -4.9
1,169,454 + HMPREF1058_RS14565 0.56 -5.0
1,169,455 - HMPREF1058_RS14565 0.56 -5.1
1,169,455 - HMPREF1058_RS14565 0.56 -5.5
1,169,455 - HMPREF1058_RS14565 0.56 -5.1
1,169,455 - HMPREF1058_RS14565 0.56 -3.2
1,169,466 - HMPREF1058_RS14565 0.57 -3.6
1,169,501 + HMPREF1058_RS14565 0.60 -3.8
1,169,502 - HMPREF1058_RS14565 0.60 -5.2
1,169,502 - HMPREF1058_RS14565 0.60 -1.0
1,169,502 - HMPREF1058_RS14565 0.60 -3.2
1,169,532 + HMPREF1058_RS14565 0.63 -3.4
1,169,533 - HMPREF1058_RS14565 0.63 -5.2
1,169,575 - HMPREF1058_RS14565 0.67 -2.7
1,169,695 - HMPREF1058_RS14565 0.78 -5.2
1,169,774 - HMPREF1058_RS14565 0.86 -4.9
1,169,813 + HMPREF1058_RS14565 0.89 -4.8
1,169,818 + HMPREF1058_RS14565 0.90 -1.2
1,169,819 - -4.0
1,169,963 - -2.3
1,170,049 + -3.7
1,170,052 + -4.4
1,170,053 - -1.7
1,170,149 - -2.3
1,170,151 + -3.9
1,170,152 - -5.4
1,170,192 + HMPREF1058_RS14560 0.11 -1.5
1,170,193 - HMPREF1058_RS14560 0.11 -1.4
1,170,244 - HMPREF1058_RS14560 0.15 -4.6
1,170,334 + HMPREF1058_RS14560 0.20 -4.1
1,170,376 - HMPREF1058_RS14560 0.23 -3.4
1,170,435 + HMPREF1058_RS14560 0.27 -4.7
1,170,504 + HMPREF1058_RS14560 0.31 -5.2
1,170,505 - HMPREF1058_RS14560 0.31 -3.8
1,170,505 - HMPREF1058_RS14560 0.31 -4.1
1,170,591 - HMPREF1058_RS14560 0.37 -2.3
1,170,877 - HMPREF1058_RS14560 0.55 -3.6
1,170,877 - HMPREF1058_RS14560 0.55 -4.3

Or see this region's nucleotide sequence