Strain Fitness in Rahnella sp. WP5 around EX31_RS24570

Experiment: Ammonium chloride (N); RCH2 media; no shaking

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS24565 and EX31_RS24570 are separated by 23 nucleotidesEX31_RS24570 and EX31_RS24575 are separated by 190 nucleotides EX31_RS24565: EX31_RS24565 - adenylosuccinate lyase, at 683,679 to 685,049 _RS24565 EX31_RS24570: EX31_RS24570 - high frequency lysogenization protein HflD, at 685,073 to 685,699 _RS24570 EX31_RS24575: EX31_RS24575 - tRNA 2-thiouridine(34) synthase MnmA, at 685,890 to 686,999 _RS24575 Position (kb) 685 686Strain fitness (log2 ratio) -1 0 1 2at 685.191 kb on - strand, within EX31_RS24570at 685.281 kb on - strand, within EX31_RS24570at 685.281 kb on - strand, within EX31_RS24570at 685.281 kb on - strand, within EX31_RS24570at 685.291 kb on - strand, within EX31_RS24570at 685.529 kb on - strand, within EX31_RS24570at 685.529 kb on - strand, within EX31_RS24570at 685.529 kb on - strand, within EX31_RS24570at 685.537 kb on - strand, within EX31_RS24570at 685.537 kb on - strand, within EX31_RS24570at 685.676 kb on - strandat 685.676 kb on - strandat 685.676 kb on - strandat 685.839 kb on - strandat 685.878 kb on - strandat 685.878 kb on - strandat 685.878 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); RCH2 media; no shaking
remove
685,191 - EX31_RS24570 0.19 +0.7
685,281 - EX31_RS24570 0.33 +1.3
685,281 - EX31_RS24570 0.33 +0.4
685,281 - EX31_RS24570 0.33 -0.3
685,291 - EX31_RS24570 0.35 +2.4
685,529 - EX31_RS24570 0.73 +0.2
685,529 - EX31_RS24570 0.73 +1.0
685,529 - EX31_RS24570 0.73 +2.0
685,537 - EX31_RS24570 0.74 +0.3
685,537 - EX31_RS24570 0.74 +0.1
685,676 - +0.9
685,676 - -0.3
685,676 - -0.2
685,839 - +0.3
685,878 - -0.1
685,878 - +2.0
685,878 - +1.1

Or see this region's nucleotide sequence