Strain Fitness in Rahnella sp. WP5 around EX31_RS24290

Experiment: Ammonium chloride (N); RCH2 media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS24275 and EX31_RS24280 are separated by 171 nucleotidesEX31_RS24280 and EX31_RS24285 overlap by 7 nucleotidesEX31_RS24285 and EX31_RS24290 are separated by 15 nucleotidesEX31_RS24290 and EX31_RS24295 are separated by 512 nucleotides EX31_RS24275: EX31_RS24275 - hypothetical protein, at 622,453 to 622,647 _RS24275 EX31_RS24280: EX31_RS24280 - hypothetical protein, at 622,819 to 623,283 _RS24280 EX31_RS24285: EX31_RS24285 - DUF1493 family protein, at 623,277 to 623,603 _RS24285 EX31_RS24290: EX31_RS24290 - type VI secretion system tube protein Hcp, at 623,619 to 624,104 _RS24290 EX31_RS24295: EX31_RS24295 - hypothetical protein, at 624,617 to 624,844 _RS24295 Position (kb) 623 624 625Strain fitness (log2 ratio) -1 0 1 2 3at 622.663 kb on + strandat 622.769 kb on + strandat 622.819 kb on - strandat 622.849 kb on + strandat 622.914 kb on + strand, within EX31_RS24280at 622.914 kb on + strand, within EX31_RS24280at 622.915 kb on - strand, within EX31_RS24280at 622.958 kb on + strand, within EX31_RS24280at 622.958 kb on + strand, within EX31_RS24280at 622.959 kb on - strand, within EX31_RS24280at 623.019 kb on + strand, within EX31_RS24280at 623.032 kb on + strand, within EX31_RS24280at 623.040 kb on + strand, within EX31_RS24280at 623.040 kb on + strand, within EX31_RS24280at 623.052 kb on + strand, within EX31_RS24280at 623.115 kb on + strand, within EX31_RS24280at 623.116 kb on - strand, within EX31_RS24280at 623.148 kb on + strand, within EX31_RS24280at 623.148 kb on + strand, within EX31_RS24280at 623.148 kb on + strand, within EX31_RS24280at 623.149 kb on - strand, within EX31_RS24280at 623.149 kb on - strand, within EX31_RS24280at 623.190 kb on + strand, within EX31_RS24280at 623.194 kb on - strand, within EX31_RS24280at 623.199 kb on - strand, within EX31_RS24280at 623.199 kb on - strand, within EX31_RS24280at 623.227 kb on + strand, within EX31_RS24280at 623.228 kb on - strand, within EX31_RS24280at 623.245 kb on + strandat 623.334 kb on + strand, within EX31_RS24285at 623.334 kb on + strand, within EX31_RS24285at 623.334 kb on + strand, within EX31_RS24285at 623.335 kb on - strand, within EX31_RS24285at 623.335 kb on - strand, within EX31_RS24285at 623.335 kb on - strand, within EX31_RS24285at 623.392 kb on + strand, within EX31_RS24285at 623.392 kb on + strand, within EX31_RS24285at 623.393 kb on - strand, within EX31_RS24285at 623.422 kb on + strand, within EX31_RS24285at 623.433 kb on + strand, within EX31_RS24285at 623.466 kb on + strand, within EX31_RS24285at 623.552 kb on + strand, within EX31_RS24285at 623.558 kb on + strand, within EX31_RS24285at 623.558 kb on + strand, within EX31_RS24285at 623.558 kb on + strand, within EX31_RS24285at 623.566 kb on + strand, within EX31_RS24285at 623.595 kb on + strandat 623.638 kb on + strandat 623.686 kb on + strand, within EX31_RS24290at 623.687 kb on - strand, within EX31_RS24290at 623.708 kb on - strand, within EX31_RS24290at 623.730 kb on - strand, within EX31_RS24290at 623.750 kb on + strand, within EX31_RS24290at 623.767 kb on + strand, within EX31_RS24290at 623.833 kb on + strand, within EX31_RS24290at 623.833 kb on + strand, within EX31_RS24290at 623.835 kb on + strand, within EX31_RS24290at 623.836 kb on - strand, within EX31_RS24290at 623.836 kb on - strand, within EX31_RS24290at 623.886 kb on + strand, within EX31_RS24290at 623.944 kb on + strand, within EX31_RS24290at 623.945 kb on - strand, within EX31_RS24290at 624.048 kb on + strand, within EX31_RS24290at 624.048 kb on + strand, within EX31_RS24290at 624.049 kb on - strand, within EX31_RS24290at 624.049 kb on - strand, within EX31_RS24290at 624.103 kb on - strandat 624.171 kb on + strandat 624.195 kb on - strandat 624.231 kb on + strandat 624.235 kb on - strandat 624.798 kb on - strand, within EX31_RS24295at 624.836 kb on + strandat 624.865 kb on + strandat 624.865 kb on + strandat 624.991 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); RCH2 media; no shaking
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622,663 + -0.4
622,769 + +0.4
622,819 - -1.7
622,849 + +1.2
622,914 + EX31_RS24280 0.20 +0.3
622,914 + EX31_RS24280 0.20 +0.9
622,915 - EX31_RS24280 0.21 +0.8
622,958 + EX31_RS24280 0.30 -1.4
622,958 + EX31_RS24280 0.30 +0.7
622,959 - EX31_RS24280 0.30 +0.2
623,019 + EX31_RS24280 0.43 +0.8
623,032 + EX31_RS24280 0.46 -0.2
623,040 + EX31_RS24280 0.48 +0.0
623,040 + EX31_RS24280 0.48 +0.6
623,052 + EX31_RS24280 0.50 -1.3
623,115 + EX31_RS24280 0.64 -1.0
623,116 - EX31_RS24280 0.64 -0.1
623,148 + EX31_RS24280 0.71 +1.8
623,148 + EX31_RS24280 0.71 +1.3
623,148 + EX31_RS24280 0.71 -0.3
623,149 - EX31_RS24280 0.71 -0.6
623,149 - EX31_RS24280 0.71 -0.6
623,190 + EX31_RS24280 0.80 +0.4
623,194 - EX31_RS24280 0.81 -1.0
623,199 - EX31_RS24280 0.82 -0.3
623,199 - EX31_RS24280 0.82 +0.8
623,227 + EX31_RS24280 0.88 -0.6
623,228 - EX31_RS24280 0.88 +0.4
623,245 + +1.2
623,334 + EX31_RS24285 0.17 +0.2
623,334 + EX31_RS24285 0.17 +0.6
623,334 + EX31_RS24285 0.17 -0.7
623,335 - EX31_RS24285 0.18 -1.2
623,335 - EX31_RS24285 0.18 +1.0
623,335 - EX31_RS24285 0.18 +2.0
623,392 + EX31_RS24285 0.35 +0.4
623,392 + EX31_RS24285 0.35 -0.6
623,393 - EX31_RS24285 0.35 -0.7
623,422 + EX31_RS24285 0.44 +0.9
623,433 + EX31_RS24285 0.48 -0.3
623,466 + EX31_RS24285 0.58 +1.0
623,552 + EX31_RS24285 0.84 -1.0
623,558 + EX31_RS24285 0.86 -0.2
623,558 + EX31_RS24285 0.86 -1.6
623,558 + EX31_RS24285 0.86 -1.0
623,566 + EX31_RS24285 0.88 -0.3
623,595 + -0.2
623,638 + -1.4
623,686 + EX31_RS24290 0.14 +0.7
623,687 - EX31_RS24290 0.14 +0.6
623,708 - EX31_RS24290 0.18 +1.6
623,730 - EX31_RS24290 0.23 +0.9
623,750 + EX31_RS24290 0.27 +0.6
623,767 + EX31_RS24290 0.30 +1.1
623,833 + EX31_RS24290 0.44 +0.8
623,833 + EX31_RS24290 0.44 +0.2
623,835 + EX31_RS24290 0.44 +0.3
623,836 - EX31_RS24290 0.45 -1.1
623,836 - EX31_RS24290 0.45 +0.4
623,886 + EX31_RS24290 0.55 -0.7
623,944 + EX31_RS24290 0.67 +0.4
623,945 - EX31_RS24290 0.67 +1.8
624,048 + EX31_RS24290 0.88 +2.0
624,048 + EX31_RS24290 0.88 +1.7
624,049 - EX31_RS24290 0.88 +1.3
624,049 - EX31_RS24290 0.88 +0.6
624,103 - -1.0
624,171 + +3.0
624,195 - -1.0
624,231 + +2.0
624,235 - -0.4
624,798 - EX31_RS24295 0.79 -1.2
624,836 + +0.2
624,865 + +0.1
624,865 + -0.6
624,991 - +0.8

Or see this region's nucleotide sequence