Strain Fitness in Rahnella sp. WP5 around EX31_RS21230

Experiment: Ammonium chloride (N); RCH2 media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS21220 and EX31_RS21225 are separated by 40 nucleotidesEX31_RS21225 and EX31_RS21230 are separated by 113 nucleotidesEX31_RS21230 and EX31_RS21235 are separated by 2 nucleotides EX31_RS21220: EX31_RS21220 - LysR family transcriptional regulator, at 887,014 to 887,910 _RS21220 EX31_RS21225: EX31_RS21225 - 2,5-didehydrogluconate reductase DkgB, at 887,951 to 888,754 _RS21225 EX31_RS21230: EX31_RS21230 - 4'-phosphopantetheinyl transferase superfamily protein, at 888,868 to 889,554 _RS21230 EX31_RS21235: EX31_RS21235 - beta-ketoacyl-ACP synthase, at 889,557 to 890,786 _RS21235 Position (kb) 888 889 890Strain fitness (log2 ratio) -2 -1 0 1 2 3at 887.869 kb on - strandat 887.908 kb on + strandat 887.908 kb on + strandat 887.908 kb on + strandat 887.908 kb on + strandat 887.908 kb on + strandat 887.908 kb on + strandat 887.908 kb on + strandat 887.908 kb on + strandat 887.908 kb on + strandat 887.908 kb on + strandat 887.908 kb on + strandat 887.908 kb on + strandat 887.909 kb on - strandat 887.909 kb on - strandat 887.909 kb on - strandat 888.064 kb on + strand, within EX31_RS21225at 888.064 kb on + strand, within EX31_RS21225at 888.064 kb on + strand, within EX31_RS21225at 888.064 kb on + strand, within EX31_RS21225at 888.065 kb on - strand, within EX31_RS21225at 888.065 kb on - strand, within EX31_RS21225at 888.065 kb on - strand, within EX31_RS21225at 888.065 kb on - strand, within EX31_RS21225at 888.108 kb on + strand, within EX31_RS21225at 888.108 kb on + strand, within EX31_RS21225at 888.109 kb on - strand, within EX31_RS21225at 888.109 kb on - strand, within EX31_RS21225at 888.178 kb on + strand, within EX31_RS21225at 888.222 kb on + strand, within EX31_RS21225at 888.222 kb on + strand, within EX31_RS21225at 888.222 kb on + strand, within EX31_RS21225at 888.222 kb on + strand, within EX31_RS21225at 888.222 kb on + strand, within EX31_RS21225at 888.222 kb on + strand, within EX31_RS21225at 888.222 kb on + strand, within EX31_RS21225at 888.222 kb on + strand, within EX31_RS21225at 888.222 kb on + strand, within EX31_RS21225at 888.222 kb on + strand, within EX31_RS21225at 888.222 kb on + strand, within EX31_RS21225at 888.222 kb on + strand, within EX31_RS21225at 888.222 kb on + strand, within EX31_RS21225at 888.222 kb on + strand, within EX31_RS21225at 888.222 kb on + strand, within EX31_RS21225at 888.222 kb on + strand, within EX31_RS21225at 888.222 kb on + strand, within EX31_RS21225at 888.223 kb on - strand, within EX31_RS21225at 888.223 kb on - strand, within EX31_RS21225at 888.223 kb on - strand, within EX31_RS21225at 888.223 kb on - strand, within EX31_RS21225at 888.223 kb on - strand, within EX31_RS21225at 888.223 kb on - strand, within EX31_RS21225at 888.223 kb on - strand, within EX31_RS21225at 888.223 kb on - strand, within EX31_RS21225at 888.223 kb on - strand, within EX31_RS21225at 888.223 kb on - strand, within EX31_RS21225at 888.223 kb on - strand, within EX31_RS21225at 888.223 kb on - strand, within EX31_RS21225at 888.223 kb on - strand, within EX31_RS21225at 888.223 kb on - strand, within EX31_RS21225at 888.223 kb on - strand, within EX31_RS21225at 888.264 kb on - strand, within EX31_RS21225at 888.361 kb on + strand, within EX31_RS21225at 888.486 kb on + strand, within EX31_RS21225at 888.486 kb on + strand, within EX31_RS21225at 888.487 kb on - strand, within EX31_RS21225at 888.576 kb on + strand, within EX31_RS21225at 888.577 kb on - strand, within EX31_RS21225at 888.577 kb on - strand, within EX31_RS21225at 888.639 kb on + strand, within EX31_RS21225at 888.748 kb on + strandat 888.749 kb on - strandat 888.749 kb on - strandat 888.754 kb on + strandat 888.754 kb on + strandat 888.754 kb on + strandat 888.754 kb on + strandat 888.754 kb on + strandat 888.754 kb on + strandat 888.754 kb on + strandat 888.755 kb on - strandat 888.755 kb on - strandat 888.755 kb on - strandat 888.769 kb on + strandat 888.770 kb on - strandat 888.785 kb on + strandat 888.802 kb on - strandat 888.912 kb on + strandat 888.912 kb on + strandat 889.041 kb on + strand, within EX31_RS21230at 889.041 kb on + strand, within EX31_RS21230at 889.042 kb on - strand, within EX31_RS21230at 889.042 kb on - strand, within EX31_RS21230at 889.221 kb on - strand, within EX31_RS21230at 889.276 kb on + strand, within EX31_RS21230at 889.276 kb on + strand, within EX31_RS21230at 889.276 kb on + strand, within EX31_RS21230at 889.276 kb on + strand, within EX31_RS21230at 889.277 kb on - strand, within EX31_RS21230at 889.277 kb on - strand, within EX31_RS21230at 889.378 kb on + strand, within EX31_RS21230at 889.533 kb on + strandat 889.534 kb on - strandat 889.558 kb on + strandat 889.589 kb on + strandat 889.589 kb on + strandat 889.589 kb on + strandat 889.589 kb on + strandat 889.590 kb on - strandat 889.590 kb on - strandat 889.590 kb on - strandat 889.623 kb on - strandat 889.637 kb on + strandat 889.638 kb on - strandat 889.638 kb on - strandat 889.638 kb on - strandat 889.656 kb on + strandat 889.656 kb on + strandat 889.656 kb on + strandat 889.656 kb on + strandat 889.657 kb on - strandat 889.657 kb on - strandat 889.657 kb on - strandat 889.657 kb on - strandat 889.657 kb on - strandat 889.657 kb on - strandat 889.657 kb on - strandat 889.657 kb on - strandat 889.657 kb on - strandat 889.660 kb on + strandat 889.661 kb on - strandat 889.661 kb on - strandat 889.703 kb on + strand, within EX31_RS21235at 889.703 kb on + strand, within EX31_RS21235at 889.703 kb on + strand, within EX31_RS21235at 889.778 kb on + strand, within EX31_RS21235at 889.778 kb on + strand, within EX31_RS21235at 889.779 kb on - strand, within EX31_RS21235at 889.779 kb on - strand, within EX31_RS21235at 889.779 kb on - strand, within EX31_RS21235at 889.779 kb on - strand, within EX31_RS21235at 889.779 kb on - strand, within EX31_RS21235at 889.789 kb on + strand, within EX31_RS21235at 889.789 kb on + strand, within EX31_RS21235at 889.789 kb on + strand, within EX31_RS21235at 889.790 kb on - strand, within EX31_RS21235at 889.790 kb on - strand, within EX31_RS21235at 889.892 kb on + strand, within EX31_RS21235at 889.892 kb on + strand, within EX31_RS21235at 889.892 kb on + strand, within EX31_RS21235at 889.892 kb on + strand, within EX31_RS21235at 889.892 kb on + strand, within EX31_RS21235at 889.893 kb on - strand, within EX31_RS21235at 889.893 kb on - strand, within EX31_RS21235at 889.893 kb on - strand, within EX31_RS21235at 889.893 kb on - strand, within EX31_RS21235at 889.893 kb on - strand, within EX31_RS21235at 889.893 kb on - strand, within EX31_RS21235at 889.895 kb on - strand, within EX31_RS21235at 889.914 kb on + strand, within EX31_RS21235at 889.914 kb on + strand, within EX31_RS21235at 889.914 kb on + strand, within EX31_RS21235at 889.914 kb on + strand, within EX31_RS21235at 889.914 kb on + strand, within EX31_RS21235at 889.915 kb on - strand, within EX31_RS21235at 889.915 kb on - strand, within EX31_RS21235at 889.916 kb on + strand, within EX31_RS21235at 889.979 kb on + strand, within EX31_RS21235at 889.980 kb on - strand, within EX31_RS21235at 890.115 kb on - strand, within EX31_RS21235at 890.260 kb on + strand, within EX31_RS21235at 890.260 kb on + strand, within EX31_RS21235at 890.260 kb on + strand, within EX31_RS21235at 890.260 kb on + strand, within EX31_RS21235at 890.261 kb on - strand, within EX31_RS21235at 890.261 kb on - strand, within EX31_RS21235at 890.267 kb on - strand, within EX31_RS21235at 890.380 kb on + strand, within EX31_RS21235at 890.380 kb on + strand, within EX31_RS21235at 890.380 kb on + strand, within EX31_RS21235at 890.380 kb on + strand, within EX31_RS21235at 890.381 kb on - strand, within EX31_RS21235at 890.381 kb on - strand, within EX31_RS21235at 890.381 kb on - strand, within EX31_RS21235at 890.381 kb on - strand, within EX31_RS21235at 890.381 kb on - strand, within EX31_RS21235at 890.381 kb on - strand, within EX31_RS21235at 890.381 kb on - strand, within EX31_RS21235at 890.387 kb on + strand, within EX31_RS21235at 890.396 kb on + strand, within EX31_RS21235at 890.396 kb on + strand, within EX31_RS21235at 890.396 kb on + strand, within EX31_RS21235at 890.397 kb on - strand, within EX31_RS21235at 890.397 kb on - strand, within EX31_RS21235at 890.402 kb on + strand, within EX31_RS21235at 890.402 kb on + strand, within EX31_RS21235at 890.403 kb on - strand, within EX31_RS21235at 890.403 kb on - strand, within EX31_RS21235at 890.403 kb on - strand, within EX31_RS21235at 890.514 kb on + strand, within EX31_RS21235

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); RCH2 media; no shaking
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887,869 - -0.8
887,908 + +0.4
887,908 + +0.2
887,908 + +0.6
887,908 + +0.7
887,908 + +0.5
887,908 + +0.9
887,908 + +0.1
887,908 + -0.8
887,908 + +1.2
887,908 + -0.9
887,908 + +0.6
887,908 + -0.8
887,909 - -1.5
887,909 - -0.5
887,909 - -0.6
888,064 + EX31_RS21225 0.14 +1.4
888,064 + EX31_RS21225 0.14 +0.0
888,064 + EX31_RS21225 0.14 +0.2
888,064 + EX31_RS21225 0.14 +0.2
888,065 - EX31_RS21225 0.14 +0.3
888,065 - EX31_RS21225 0.14 -1.6
888,065 - EX31_RS21225 0.14 -1.9
888,065 - EX31_RS21225 0.14 -0.3
888,108 + EX31_RS21225 0.20 +0.9
888,108 + EX31_RS21225 0.20 +1.2
888,109 - EX31_RS21225 0.20 -0.2
888,109 - EX31_RS21225 0.20 +0.1
888,178 + EX31_RS21225 0.28 -0.2
888,222 + EX31_RS21225 0.34 +0.3
888,222 + EX31_RS21225 0.34 +0.8
888,222 + EX31_RS21225 0.34 +1.0
888,222 + EX31_RS21225 0.34 +0.9
888,222 + EX31_RS21225 0.34 -0.2
888,222 + EX31_RS21225 0.34 -0.2
888,222 + EX31_RS21225 0.34 +0.4
888,222 + EX31_RS21225 0.34 +0.0
888,222 + EX31_RS21225 0.34 +0.5
888,222 + EX31_RS21225 0.34 +1.2
888,222 + EX31_RS21225 0.34 +0.4
888,222 + EX31_RS21225 0.34 +2.9
888,222 + EX31_RS21225 0.34 +0.0
888,222 + EX31_RS21225 0.34 +0.7
888,222 + EX31_RS21225 0.34 -0.8
888,222 + EX31_RS21225 0.34 -0.4
888,222 + EX31_RS21225 0.34 +0.6
888,223 - EX31_RS21225 0.34 -0.8
888,223 - EX31_RS21225 0.34 +1.3
888,223 - EX31_RS21225 0.34 +0.1
888,223 - EX31_RS21225 0.34 +0.1
888,223 - EX31_RS21225 0.34 -1.0
888,223 - EX31_RS21225 0.34 -1.0
888,223 - EX31_RS21225 0.34 -0.4
888,223 - EX31_RS21225 0.34 +0.1
888,223 - EX31_RS21225 0.34 -0.4
888,223 - EX31_RS21225 0.34 -0.5
888,223 - EX31_RS21225 0.34 -1.1
888,223 - EX31_RS21225 0.34 -0.3
888,223 - EX31_RS21225 0.34 +0.4
888,223 - EX31_RS21225 0.34 -0.8
888,223 - EX31_RS21225 0.34 -1.1
888,264 - EX31_RS21225 0.39 +0.2
888,361 + EX31_RS21225 0.51 +0.2
888,486 + EX31_RS21225 0.67 -0.1
888,486 + EX31_RS21225 0.67 +0.3
888,487 - EX31_RS21225 0.67 -0.6
888,576 + EX31_RS21225 0.78 +0.4
888,577 - EX31_RS21225 0.78 +0.9
888,577 - EX31_RS21225 0.78 -0.8
888,639 + EX31_RS21225 0.86 -1.6
888,748 + +0.2
888,749 - -0.5
888,749 - +0.6
888,754 + -1.4
888,754 + +0.4
888,754 + +0.0
888,754 + +0.2
888,754 + +0.2
888,754 + -0.8
888,754 + +0.6
888,755 - -0.7
888,755 - -0.4
888,755 - -0.0
888,769 + -0.3
888,770 - +0.3
888,785 + -0.5
888,802 - -1.9
888,912 + -0.3
888,912 + -1.7
889,041 + EX31_RS21230 0.25 +0.3
889,041 + EX31_RS21230 0.25 +0.8
889,042 - EX31_RS21230 0.25 -0.4
889,042 - EX31_RS21230 0.25 +0.2
889,221 - EX31_RS21230 0.51 +0.3
889,276 + EX31_RS21230 0.59 +0.4
889,276 + EX31_RS21230 0.59 -2.3
889,276 + EX31_RS21230 0.59 +1.4
889,276 + EX31_RS21230 0.59 +2.2
889,277 - EX31_RS21230 0.60 +1.0
889,277 - EX31_RS21230 0.60 +0.8
889,378 + EX31_RS21230 0.74 +0.1
889,533 + -0.5
889,534 - -0.8
889,558 + +0.5
889,589 + -1.0
889,589 + -0.7
889,589 + +0.4
889,589 + -0.3
889,590 - -1.3
889,590 - -0.2
889,590 - +0.4
889,623 - -0.7
889,637 + -0.7
889,638 - +0.6
889,638 - -0.5
889,638 - -1.2
889,656 + -1.0
889,656 + -1.6
889,656 + +0.9
889,656 + +0.2
889,657 - -0.3
889,657 - +1.5
889,657 - +0.8
889,657 - -0.7
889,657 - -1.9
889,657 - +0.7
889,657 - +0.6
889,657 - -0.2
889,657 - -0.3
889,660 + +1.2
889,661 - -0.5
889,661 - -1.0
889,703 + EX31_RS21235 0.12 +1.6
889,703 + EX31_RS21235 0.12 -0.9
889,703 + EX31_RS21235 0.12 -0.2
889,778 + EX31_RS21235 0.18 +0.1
889,778 + EX31_RS21235 0.18 +1.8
889,779 - EX31_RS21235 0.18 +0.0
889,779 - EX31_RS21235 0.18 -1.0
889,779 - EX31_RS21235 0.18 -0.4
889,779 - EX31_RS21235 0.18 +0.5
889,779 - EX31_RS21235 0.18 -0.2
889,789 + EX31_RS21235 0.19 -0.2
889,789 + EX31_RS21235 0.19 -0.7
889,789 + EX31_RS21235 0.19 +0.3
889,790 - EX31_RS21235 0.19 -1.1
889,790 - EX31_RS21235 0.19 -1.0
889,892 + EX31_RS21235 0.27 +0.2
889,892 + EX31_RS21235 0.27 -2.5
889,892 + EX31_RS21235 0.27 +0.2
889,892 + EX31_RS21235 0.27 -0.9
889,892 + EX31_RS21235 0.27 +0.1
889,893 - EX31_RS21235 0.27 +0.2
889,893 - EX31_RS21235 0.27 +1.2
889,893 - EX31_RS21235 0.27 +0.5
889,893 - EX31_RS21235 0.27 +0.9
889,893 - EX31_RS21235 0.27 +0.5
889,893 - EX31_RS21235 0.27 +0.4
889,895 - EX31_RS21235 0.27 +0.3
889,914 + EX31_RS21235 0.29 -0.5
889,914 + EX31_RS21235 0.29 -0.1
889,914 + EX31_RS21235 0.29 +0.2
889,914 + EX31_RS21235 0.29 +1.2
889,914 + EX31_RS21235 0.29 -0.8
889,915 - EX31_RS21235 0.29 +0.2
889,915 - EX31_RS21235 0.29 -0.3
889,916 + EX31_RS21235 0.29 +0.8
889,979 + EX31_RS21235 0.34 -0.6
889,980 - EX31_RS21235 0.34 -0.8
890,115 - EX31_RS21235 0.45 -0.5
890,260 + EX31_RS21235 0.57 -1.2
890,260 + EX31_RS21235 0.57 -0.5
890,260 + EX31_RS21235 0.57 +1.5
890,260 + EX31_RS21235 0.57 +1.0
890,261 - EX31_RS21235 0.57 +0.9
890,261 - EX31_RS21235 0.57 +0.2
890,267 - EX31_RS21235 0.58 +0.2
890,380 + EX31_RS21235 0.67 -0.3
890,380 + EX31_RS21235 0.67 -0.3
890,380 + EX31_RS21235 0.67 +0.4
890,380 + EX31_RS21235 0.67 +0.6
890,381 - EX31_RS21235 0.67 +0.2
890,381 - EX31_RS21235 0.67 +1.2
890,381 - EX31_RS21235 0.67 -0.4
890,381 - EX31_RS21235 0.67 +0.2
890,381 - EX31_RS21235 0.67 -0.8
890,381 - EX31_RS21235 0.67 -0.1
890,381 - EX31_RS21235 0.67 -1.1
890,387 + EX31_RS21235 0.67 +0.7
890,396 + EX31_RS21235 0.68 -0.9
890,396 + EX31_RS21235 0.68 +0.7
890,396 + EX31_RS21235 0.68 -0.9
890,397 - EX31_RS21235 0.68 +1.6
890,397 - EX31_RS21235 0.68 -2.6
890,402 + EX31_RS21235 0.69 -1.5
890,402 + EX31_RS21235 0.69 +0.8
890,403 - EX31_RS21235 0.69 -1.5
890,403 - EX31_RS21235 0.69 -0.4
890,403 - EX31_RS21235 0.69 -1.2
890,514 + EX31_RS21235 0.78 -0.1

Or see this region's nucleotide sequence