Strain Fitness in Rahnella sp. WP5 around EX31_RS21135

Experiment: Ammonium chloride (N); RCH2 media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS21130 and EX31_RS21135 are separated by 36 nucleotidesEX31_RS21135 and EX31_RS21140 overlap by 4 nucleotides EX31_RS21130: EX31_RS21130 - gamma-glutamyltransferase, at 869,390 to 870,976 _RS21130 EX31_RS21135: EX31_RS21135 - oxalurate catabolism protein HpxX, at 871,013 to 871,207 _RS21135 EX31_RS21140: EX31_RS21140 - AtzE family amidohydrolase, at 871,204 to 872,607 _RS21140 Position (kb) 871 872Strain fitness (log2 ratio) -2 -1 0 1 2 3at 870.023 kb on - strand, within EX31_RS21130at 870.080 kb on + strand, within EX31_RS21130at 870.080 kb on + strand, within EX31_RS21130at 870.080 kb on + strand, within EX31_RS21130at 870.080 kb on + strand, within EX31_RS21130at 870.081 kb on - strand, within EX31_RS21130at 870.081 kb on - strand, within EX31_RS21130at 870.081 kb on - strand, within EX31_RS21130at 870.081 kb on - strand, within EX31_RS21130at 870.121 kb on + strand, within EX31_RS21130at 870.121 kb on + strand, within EX31_RS21130at 870.121 kb on + strand, within EX31_RS21130at 870.122 kb on - strand, within EX31_RS21130at 870.122 kb on - strand, within EX31_RS21130at 870.135 kb on - strand, within EX31_RS21130at 870.283 kb on + strand, within EX31_RS21130at 870.283 kb on + strand, within EX31_RS21130at 870.339 kb on - strand, within EX31_RS21130at 870.339 kb on - strand, within EX31_RS21130at 870.397 kb on + strand, within EX31_RS21130at 870.397 kb on + strand, within EX31_RS21130at 870.398 kb on - strand, within EX31_RS21130at 870.398 kb on - strand, within EX31_RS21130at 870.460 kb on + strand, within EX31_RS21130at 870.473 kb on + strand, within EX31_RS21130at 870.473 kb on + strand, within EX31_RS21130at 870.474 kb on - strand, within EX31_RS21130at 870.564 kb on + strand, within EX31_RS21130at 870.565 kb on - strand, within EX31_RS21130at 870.624 kb on + strand, within EX31_RS21130at 870.624 kb on + strand, within EX31_RS21130at 870.624 kb on + strand, within EX31_RS21130at 870.625 kb on - strand, within EX31_RS21130at 870.625 kb on - strand, within EX31_RS21130at 870.626 kb on + strand, within EX31_RS21130at 870.626 kb on + strand, within EX31_RS21130at 870.627 kb on - strand, within EX31_RS21130at 870.627 kb on - strand, within EX31_RS21130at 870.648 kb on - strand, within EX31_RS21130at 870.708 kb on + strand, within EX31_RS21130at 870.708 kb on + strand, within EX31_RS21130at 870.708 kb on + strand, within EX31_RS21130at 870.708 kb on + strand, within EX31_RS21130at 870.708 kb on + strand, within EX31_RS21130at 870.708 kb on + strand, within EX31_RS21130at 870.708 kb on + strand, within EX31_RS21130at 870.708 kb on + strand, within EX31_RS21130at 870.708 kb on + strand, within EX31_RS21130at 870.708 kb on + strand, within EX31_RS21130at 870.708 kb on + strand, within EX31_RS21130at 870.708 kb on + strand, within EX31_RS21130at 870.708 kb on + strand, within EX31_RS21130at 870.708 kb on + strand, within EX31_RS21130at 870.708 kb on + strand, within EX31_RS21130at 870.708 kb on + strand, within EX31_RS21130at 870.709 kb on - strand, within EX31_RS21130at 870.709 kb on - strand, within EX31_RS21130at 870.709 kb on - strand, within EX31_RS21130at 870.709 kb on - strand, within EX31_RS21130at 870.709 kb on - strand, within EX31_RS21130at 870.709 kb on - strand, within EX31_RS21130at 870.709 kb on - strand, within EX31_RS21130at 870.709 kb on - strand, within EX31_RS21130at 870.709 kb on - strand, within EX31_RS21130at 870.709 kb on - strand, within EX31_RS21130at 870.709 kb on - strand, within EX31_RS21130at 870.709 kb on - strand, within EX31_RS21130at 870.709 kb on - strand, within EX31_RS21130at 870.709 kb on - strand, within EX31_RS21130at 870.766 kb on + strand, within EX31_RS21130at 870.767 kb on - strand, within EX31_RS21130at 870.953 kb on - strandat 870.989 kb on + strandat 870.989 kb on + strandat 871.021 kb on + strandat 871.022 kb on - strandat 871.049 kb on + strand, within EX31_RS21135at 871.049 kb on + strand, within EX31_RS21135at 871.049 kb on + strand, within EX31_RS21135at 871.049 kb on + strand, within EX31_RS21135at 871.050 kb on - strand, within EX31_RS21135at 871.050 kb on - strand, within EX31_RS21135at 871.050 kb on - strand, within EX31_RS21135at 871.050 kb on - strand, within EX31_RS21135at 871.050 kb on - strand, within EX31_RS21135at 871.051 kb on + strand, within EX31_RS21135at 871.051 kb on + strand, within EX31_RS21135at 871.161 kb on + strand, within EX31_RS21135at 871.161 kb on + strand, within EX31_RS21135at 871.162 kb on - strand, within EX31_RS21135at 871.162 kb on - strand, within EX31_RS21135at 871.162 kb on - strand, within EX31_RS21135at 871.218 kb on + strandat 871.218 kb on + strandat 871.218 kb on + strandat 871.218 kb on + strandat 871.219 kb on - strandat 871.219 kb on - strandat 871.238 kb on + strandat 871.238 kb on + strandat 871.238 kb on + strandat 871.239 kb on - strandat 871.239 kb on - strandat 871.239 kb on - strandat 871.239 kb on - strandat 871.239 kb on - strandat 871.239 kb on - strandat 871.406 kb on + strand, within EX31_RS21140at 871.407 kb on - strand, within EX31_RS21140at 871.407 kb on - strand, within EX31_RS21140at 871.407 kb on - strand, within EX31_RS21140at 871.407 kb on - strand, within EX31_RS21140at 871.578 kb on + strand, within EX31_RS21140at 871.578 kb on + strand, within EX31_RS21140at 871.578 kb on + strand, within EX31_RS21140at 871.578 kb on + strand, within EX31_RS21140at 871.588 kb on + strand, within EX31_RS21140at 871.621 kb on + strand, within EX31_RS21140at 871.622 kb on - strand, within EX31_RS21140at 871.732 kb on - strand, within EX31_RS21140at 871.763 kb on + strand, within EX31_RS21140at 871.763 kb on + strand, within EX31_RS21140at 871.763 kb on + strand, within EX31_RS21140at 871.763 kb on + strand, within EX31_RS21140at 871.764 kb on - strand, within EX31_RS21140at 871.764 kb on - strand, within EX31_RS21140at 871.764 kb on - strand, within EX31_RS21140at 871.764 kb on - strand, within EX31_RS21140at 871.888 kb on + strand, within EX31_RS21140at 871.888 kb on + strand, within EX31_RS21140at 871.888 kb on + strand, within EX31_RS21140at 871.889 kb on - strand, within EX31_RS21140at 871.899 kb on - strand, within EX31_RS21140at 871.899 kb on - strand, within EX31_RS21140at 871.899 kb on - strand, within EX31_RS21140at 871.965 kb on + strand, within EX31_RS21140at 871.965 kb on + strand, within EX31_RS21140at 872.009 kb on - strand, within EX31_RS21140at 872.048 kb on + strand, within EX31_RS21140at 872.048 kb on + strand, within EX31_RS21140at 872.049 kb on - strand, within EX31_RS21140at 872.128 kb on - strand, within EX31_RS21140at 872.158 kb on + strand, within EX31_RS21140at 872.158 kb on + strand, within EX31_RS21140at 872.159 kb on - strand, within EX31_RS21140

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); RCH2 media; no shaking
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870,023 - EX31_RS21130 0.40 +0.0
870,080 + EX31_RS21130 0.43 +0.7
870,080 + EX31_RS21130 0.43 -1.4
870,080 + EX31_RS21130 0.43 +1.0
870,080 + EX31_RS21130 0.43 -1.8
870,081 - EX31_RS21130 0.44 +0.1
870,081 - EX31_RS21130 0.44 -0.1
870,081 - EX31_RS21130 0.44 -0.5
870,081 - EX31_RS21130 0.44 +0.2
870,121 + EX31_RS21130 0.46 +1.4
870,121 + EX31_RS21130 0.46 -0.4
870,121 + EX31_RS21130 0.46 +0.0
870,122 - EX31_RS21130 0.46 -0.6
870,122 - EX31_RS21130 0.46 +0.2
870,135 - EX31_RS21130 0.47 -0.1
870,283 + EX31_RS21130 0.56 +0.8
870,283 + EX31_RS21130 0.56 +0.5
870,339 - EX31_RS21130 0.60 +0.2
870,339 - EX31_RS21130 0.60 -0.0
870,397 + EX31_RS21130 0.63 -0.2
870,397 + EX31_RS21130 0.63 +0.3
870,398 - EX31_RS21130 0.64 -0.1
870,398 - EX31_RS21130 0.64 -0.7
870,460 + EX31_RS21130 0.67 -0.5
870,473 + EX31_RS21130 0.68 -0.5
870,473 + EX31_RS21130 0.68 +0.4
870,474 - EX31_RS21130 0.68 -2.1
870,564 + EX31_RS21130 0.74 +0.7
870,565 - EX31_RS21130 0.74 +0.2
870,624 + EX31_RS21130 0.78 +0.2
870,624 + EX31_RS21130 0.78 +0.2
870,624 + EX31_RS21130 0.78 +0.6
870,625 - EX31_RS21130 0.78 +0.3
870,625 - EX31_RS21130 0.78 -0.2
870,626 + EX31_RS21130 0.78 -0.0
870,626 + EX31_RS21130 0.78 -0.1
870,627 - EX31_RS21130 0.78 +0.3
870,627 - EX31_RS21130 0.78 -0.5
870,648 - EX31_RS21130 0.79 -0.6
870,708 + EX31_RS21130 0.83 +0.2
870,708 + EX31_RS21130 0.83 +0.6
870,708 + EX31_RS21130 0.83 +0.2
870,708 + EX31_RS21130 0.83 -0.9
870,708 + EX31_RS21130 0.83 -0.3
870,708 + EX31_RS21130 0.83 -1.1
870,708 + EX31_RS21130 0.83 -1.8
870,708 + EX31_RS21130 0.83 +0.5
870,708 + EX31_RS21130 0.83 -0.0
870,708 + EX31_RS21130 0.83 -0.1
870,708 + EX31_RS21130 0.83 -0.2
870,708 + EX31_RS21130 0.83 +0.7
870,708 + EX31_RS21130 0.83 +0.6
870,708 + EX31_RS21130 0.83 -1.2
870,708 + EX31_RS21130 0.83 +0.6
870,708 + EX31_RS21130 0.83 -0.3
870,709 - EX31_RS21130 0.83 +0.8
870,709 - EX31_RS21130 0.83 +0.1
870,709 - EX31_RS21130 0.83 -0.4
870,709 - EX31_RS21130 0.83 +0.7
870,709 - EX31_RS21130 0.83 +0.1
870,709 - EX31_RS21130 0.83 +1.2
870,709 - EX31_RS21130 0.83 +0.7
870,709 - EX31_RS21130 0.83 +0.4
870,709 - EX31_RS21130 0.83 -0.1
870,709 - EX31_RS21130 0.83 -0.2
870,709 - EX31_RS21130 0.83 +1.2
870,709 - EX31_RS21130 0.83 -2.2
870,709 - EX31_RS21130 0.83 +0.8
870,709 - EX31_RS21130 0.83 +0.4
870,766 + EX31_RS21130 0.87 -0.6
870,767 - EX31_RS21130 0.87 +1.2
870,953 - +0.9
870,989 + +0.7
870,989 + -0.6
871,021 + -0.3
871,022 - +0.9
871,049 + EX31_RS21135 0.18 -0.8
871,049 + EX31_RS21135 0.18 +0.3
871,049 + EX31_RS21135 0.18 -2.2
871,049 + EX31_RS21135 0.18 -0.7
871,050 - EX31_RS21135 0.19 +0.7
871,050 - EX31_RS21135 0.19 -0.5
871,050 - EX31_RS21135 0.19 -0.1
871,050 - EX31_RS21135 0.19 -0.4
871,050 - EX31_RS21135 0.19 -0.7
871,051 + EX31_RS21135 0.19 +0.5
871,051 + EX31_RS21135 0.19 -0.3
871,161 + EX31_RS21135 0.76 -0.2
871,161 + EX31_RS21135 0.76 +0.2
871,162 - EX31_RS21135 0.76 +0.4
871,162 - EX31_RS21135 0.76 -0.4
871,162 - EX31_RS21135 0.76 -0.4
871,218 + -0.4
871,218 + -0.9
871,218 + +1.2
871,218 + +0.2
871,219 - +0.1
871,219 - +0.4
871,238 + -1.4
871,238 + +0.2
871,238 + +0.7
871,239 - -0.3
871,239 - -1.2
871,239 - -0.5
871,239 - +0.5
871,239 - -0.9
871,239 - +0.9
871,406 + EX31_RS21140 0.14 -0.4
871,407 - EX31_RS21140 0.14 +0.1
871,407 - EX31_RS21140 0.14 -0.7
871,407 - EX31_RS21140 0.14 -1.6
871,407 - EX31_RS21140 0.14 -0.8
871,578 + EX31_RS21140 0.27 -0.3
871,578 + EX31_RS21140 0.27 -0.1
871,578 + EX31_RS21140 0.27 -1.7
871,578 + EX31_RS21140 0.27 +0.3
871,588 + EX31_RS21140 0.27 -1.2
871,621 + EX31_RS21140 0.30 -0.1
871,622 - EX31_RS21140 0.30 +0.1
871,732 - EX31_RS21140 0.38 +0.2
871,763 + EX31_RS21140 0.40 +0.1
871,763 + EX31_RS21140 0.40 -0.9
871,763 + EX31_RS21140 0.40 +0.8
871,763 + EX31_RS21140 0.40 +0.6
871,764 - EX31_RS21140 0.40 +0.4
871,764 - EX31_RS21140 0.40 +1.6
871,764 - EX31_RS21140 0.40 -0.4
871,764 - EX31_RS21140 0.40 +0.3
871,888 + EX31_RS21140 0.49 +2.8
871,888 + EX31_RS21140 0.49 -2.4
871,888 + EX31_RS21140 0.49 +0.0
871,889 - EX31_RS21140 0.49 -0.1
871,899 - EX31_RS21140 0.50 +1.2
871,899 - EX31_RS21140 0.50 -0.4
871,899 - EX31_RS21140 0.50 -0.7
871,965 + EX31_RS21140 0.54 -0.7
871,965 + EX31_RS21140 0.54 +0.5
872,009 - EX31_RS21140 0.57 +0.3
872,048 + EX31_RS21140 0.60 +0.8
872,048 + EX31_RS21140 0.60 +1.2
872,049 - EX31_RS21140 0.60 -0.8
872,128 - EX31_RS21140 0.66 +0.1
872,158 + EX31_RS21140 0.68 +0.1
872,158 + EX31_RS21140 0.68 -1.1
872,159 - EX31_RS21140 0.68 -0.8

Or see this region's nucleotide sequence