Experiment: Ammonium chloride (N); RCH2 media; no shaking
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS17380 and EX31_RS26075 overlap by 43 nucleotides EX31_RS26075 and EX31_RS17385 are separated by 94 nucleotides EX31_RS17385 and EX31_RS17390 are separated by 246 nucleotides EX31_RS17390 and EX31_RS17395 are separated by 20 nucleotides
EX31_RS17380: EX31_RS17380 - tRNA-Ser, at 25,774 to 25,863
_RS17380
EX31_RS26075: EX31_RS26075 - hypothetical protein, at 25,821 to 25,964
_RS26075
EX31_RS17385: EX31_RS17385 - tRNA-Ser, at 26,059 to 26,148
_RS17385
EX31_RS17390: EX31_RS17390 - succinylglutamate desuccinylase, at 26,395 to 27,375
_RS17390
EX31_RS17395: EX31_RS17395 - N-succinylarginine dihydrolase, at 27,396 to 28,739
_RS17395
Position (kb) 26
27
28 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 25.395 kb on + strand at 25.395 kb on + strand at 25.402 kb on + strand at 25.402 kb on + strand at 25.402 kb on + strand at 25.403 kb on - strand at 25.432 kb on - strand at 25.432 kb on - strand at 25.441 kb on - strand at 25.441 kb on - strand at 25.441 kb on - strand at 25.470 kb on + strand at 25.470 kb on + strand at 25.470 kb on + strand at 25.470 kb on + strand at 25.471 kb on - strand at 25.471 kb on - strand at 25.471 kb on - strand at 25.472 kb on + strand at 25.472 kb on + strand at 25.492 kb on - strand at 25.492 kb on - strand at 25.501 kb on + strand at 25.501 kb on + strand at 25.501 kb on + strand at 25.501 kb on + strand at 25.501 kb on + strand at 25.501 kb on + strand at 25.501 kb on + strand at 25.502 kb on - strand at 25.502 kb on - strand at 25.509 kb on + strand at 25.510 kb on - strand at 25.510 kb on - strand at 25.513 kb on + strand at 25.514 kb on - strand at 25.570 kb on - strand at 25.653 kb on - strand at 25.653 kb on - strand at 25.671 kb on - strand at 25.671 kb on - strand at 25.818 kb on + strand, within EX31_RS17380 at 25.818 kb on + strand, within EX31_RS17380 at 25.818 kb on + strand, within EX31_RS17380 at 25.818 kb on + strand, within EX31_RS17380 at 25.818 kb on + strand, within EX31_RS17380 at 25.818 kb on + strand, within EX31_RS17380 at 25.818 kb on + strand, within EX31_RS17380 at 25.818 kb on + strand, within EX31_RS17380 at 25.820 kb on + strand, within EX31_RS17380 at 25.820 kb on + strand, within EX31_RS17380 at 25.820 kb on + strand, within EX31_RS17380 at 25.820 kb on + strand, within EX31_RS17380 at 25.832 kb on + strand at 25.867 kb on + strand, within EX31_RS26075 at 26.017 kb on + strand at 26.017 kb on + strand at 26.019 kb on + strand at 26.019 kb on + strand at 26.019 kb on + strand at 26.019 kb on + strand at 26.019 kb on + strand at 26.019 kb on + strand at 26.019 kb on + strand at 26.020 kb on - strand at 26.020 kb on - strand at 26.020 kb on - strand at 26.022 kb on + strand at 26.022 kb on + strand at 26.103 kb on + strand, within EX31_RS17385 at 26.103 kb on + strand, within EX31_RS17385 at 26.103 kb on + strand, within EX31_RS17385 at 26.103 kb on + strand, within EX31_RS17385 at 26.103 kb on + strand, within EX31_RS17385 at 26.103 kb on + strand, within EX31_RS17385 at 26.103 kb on + strand, within EX31_RS17385 at 26.103 kb on + strand, within EX31_RS17385 at 26.103 kb on + strand, within EX31_RS17385 at 26.103 kb on + strand, within EX31_RS17385 at 26.105 kb on + strand, within EX31_RS17385 at 26.152 kb on + strand at 26.297 kb on - strand at 26.297 kb on - strand at 26.312 kb on + strand at 26.389 kb on + strand at 26.390 kb on - strand at 26.390 kb on - strand at 26.390 kb on - strand at 26.390 kb on - strand at 26.487 kb on - strand at 26.536 kb on - strand, within EX31_RS17390 at 26.563 kb on + strand, within EX31_RS17390 at 26.564 kb on - strand, within EX31_RS17390 at 26.785 kb on - strand, within EX31_RS17390 at 26.936 kb on + strand, within EX31_RS17390 at 27.036 kb on + strand, within EX31_RS17390 at 27.037 kb on - strand, within EX31_RS17390 at 27.037 kb on - strand, within EX31_RS17390 at 27.037 kb on - strand, within EX31_RS17390 at 27.124 kb on + strand, within EX31_RS17390 at 27.375 kb on + strand at 27.375 kb on + strand at 27.376 kb on - strand at 27.376 kb on - strand at 27.376 kb on - strand at 27.376 kb on - strand at 27.458 kb on + strand at 27.459 kb on - strand at 27.459 kb on - strand at 27.537 kb on - strand, within EX31_RS17395 at 27.590 kb on + strand, within EX31_RS17395 at 27.721 kb on + strand, within EX31_RS17395 at 27.722 kb on - strand, within EX31_RS17395 at 27.814 kb on + strand, within EX31_RS17395 at 27.815 kb on - strand, within EX31_RS17395 at 27.815 kb on - strand, within EX31_RS17395 at 27.815 kb on - strand, within EX31_RS17395 at 27.815 kb on - strand, within EX31_RS17395 at 28.086 kb on + strand, within EX31_RS17395 at 28.167 kb on + strand, within EX31_RS17395 at 28.168 kb on - strand, within EX31_RS17395 at 28.183 kb on + strand, within EX31_RS17395 at 28.184 kb on - strand, within EX31_RS17395 at 28.268 kb on - strand, within EX31_RS17395 at 28.338 kb on - strand, within EX31_RS17395
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N); RCH2 media; no shaking remove 25,395 + -0.6 25,395 + -1.5 25,402 + -0.3 25,402 + +0.8 25,402 + -0.3 25,403 - +1.3 25,432 - -1.9 25,432 - +0.7 25,441 - +0.8 25,441 - -2.2 25,441 - -0.0 25,470 + +0.8 25,470 + +1.0 25,470 + +0.8 25,470 + -2.0 25,471 - +0.4 25,471 - -0.7 25,471 - +1.2 25,472 + -0.4 25,472 + +1.0 25,492 - -1.3 25,492 - -1.3 25,501 + -0.5 25,501 + +0.2 25,501 + -0.9 25,501 + +0.7 25,501 + +1.0 25,501 + +1.1 25,501 + -0.3 25,502 - -0.3 25,502 - +0.8 25,509 + +1.6 25,510 - +0.4 25,510 - -0.4 25,513 + -0.0 25,514 - -1.0 25,570 - -1.3 25,653 - -0.5 25,653 - -0.6 25,671 - +1.4 25,671 - +0.2 25,818 + EX31_RS17380 0.49 -0.0 25,818 + EX31_RS17380 0.49 +2.0 25,818 + EX31_RS17380 0.49 -0.6 25,818 + EX31_RS17380 0.49 -0.5 25,818 + EX31_RS17380 0.49 -3.1 25,818 + EX31_RS17380 0.49 -1.2 25,818 + EX31_RS17380 0.49 -0.5 25,818 + EX31_RS17380 0.49 -0.9 25,820 + EX31_RS17380 0.51 +0.8 25,820 + EX31_RS17380 0.51 -0.2 25,820 + EX31_RS17380 0.51 -1.3 25,820 + EX31_RS17380 0.51 -1.0 25,832 + -0.2 25,867 + EX31_RS26075 0.32 +0.4 26,017 + -0.5 26,017 + +0.1 26,019 + -0.8 26,019 + +0.1 26,019 + -0.0 26,019 + +0.3 26,019 + -0.2 26,019 + +0.3 26,019 + -1.2 26,020 - +0.4 26,020 - +2.0 26,020 - +0.9 26,022 + +0.0 26,022 + -0.6 26,103 + EX31_RS17385 0.49 -0.3 26,103 + EX31_RS17385 0.49 -1.1 26,103 + EX31_RS17385 0.49 -0.7 26,103 + EX31_RS17385 0.49 -0.1 26,103 + EX31_RS17385 0.49 +0.5 26,103 + EX31_RS17385 0.49 -0.0 26,103 + EX31_RS17385 0.49 -0.5 26,103 + EX31_RS17385 0.49 -1.5 26,103 + EX31_RS17385 0.49 -1.6 26,103 + EX31_RS17385 0.49 +0.1 26,105 + EX31_RS17385 0.51 -0.3 26,152 + +0.1 26,297 - -0.4 26,297 - -0.7 26,312 + -0.6 26,389 + +1.6 26,390 - +0.6 26,390 - -1.8 26,390 - -0.6 26,390 - +1.0 26,487 - +1.0 26,536 - EX31_RS17390 0.14 +0.8 26,563 + EX31_RS17390 0.17 +0.8 26,564 - EX31_RS17390 0.17 +0.6 26,785 - EX31_RS17390 0.40 -0.0 26,936 + EX31_RS17390 0.55 +1.1 27,036 + EX31_RS17390 0.65 -0.8 27,037 - EX31_RS17390 0.65 +0.5 27,037 - EX31_RS17390 0.65 +0.3 27,037 - EX31_RS17390 0.65 +0.4 27,124 + EX31_RS17390 0.74 -1.3 27,375 + +1.0 27,375 + +0.7 27,376 - +1.3 27,376 - -0.9 27,376 - +0.1 27,376 - +2.0 27,458 + -0.0 27,459 - +0.2 27,459 - -0.6 27,537 - EX31_RS17395 0.10 +0.1 27,590 + EX31_RS17395 0.14 +0.8 27,721 + EX31_RS17395 0.24 +0.7 27,722 - EX31_RS17395 0.24 +0.4 27,814 + EX31_RS17395 0.31 -0.1 27,815 - EX31_RS17395 0.31 -0.5 27,815 - EX31_RS17395 0.31 -0.8 27,815 - EX31_RS17395 0.31 +0.7 27,815 - EX31_RS17395 0.31 +0.3 28,086 + EX31_RS17395 0.51 +1.1 28,167 + EX31_RS17395 0.57 +1.0 28,168 - EX31_RS17395 0.57 +0.8 28,183 + EX31_RS17395 0.59 -0.5 28,184 - EX31_RS17395 0.59 -1.6 28,268 - EX31_RS17395 0.65 +1.0 28,338 - EX31_RS17395 0.70 -0.6
Or see this region's nucleotide sequence