Strain Fitness in Rahnella sp. WP5 around EX31_RS15960

Experiment: Ammonium chloride (N); RCH2 media; no shaking

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ammonium chloride (N); RCH2 media; no shaking
1,949	-				-1.3
2,513	+				+0.8
2,514	-				-0.4
2,521	-				-0.7
2,526	+				+1.0
2,547	-				-0.6
2,559	+		EX31_RS15960	0.11	-0.6
2,560	-		EX31_RS15960	0.11	+0.3
2,560	-		EX31_RS15960	0.11	-0.2
2,564	+		EX31_RS15960	0.12	-0.0
2,564	+		EX31_RS15960	0.12	+0.3
2,564	+		EX31_RS15960	0.12	-0.9
2,564	+		EX31_RS15960	0.12	+0.1
2,564	+		EX31_RS15960	0.12	-1.5
2,564	+		EX31_RS15960	0.12	-0.8
2,565	-		EX31_RS15960	0.12	+0.7
2,565	-		EX31_RS15960	0.12	-0.3
2,565	-		EX31_RS15960	0.12	+0.3
2,565	-		EX31_RS15960	0.12	-0.1
2,565	-		EX31_RS15960	0.12	-2.0
2,636	+		EX31_RS15960	0.25	+0.7
2,636	+		EX31_RS15960	0.25	+0.4
2,637	-		EX31_RS15960	0.25	-1.3
2,637	-		EX31_RS15960	0.25	-0.2
2,637	-		EX31_RS15960	0.25	+0.9
2,637	-		EX31_RS15960	0.25	+1.4
2,637	-		EX31_RS15960	0.25	-1.2
2,639	+		EX31_RS15960	0.25	+0.5
2,640	-		EX31_RS15960	0.26	-0.6
2,640	-		EX31_RS15960	0.26	-0.6
2,640	-		EX31_RS15960	0.26	-0.2
2,640	-		EX31_RS15960	0.26	-0.4
2,686	-		EX31_RS15960	0.34	+0.4
2,750	+		EX31_RS15960	0.45	+0.3
2,750	+		EX31_RS15960	0.45	-2.6
2,750	+		EX31_RS15960	0.45	-1.0
2,750	+		EX31_RS15960	0.45	-0.9
2,750	+		EX31_RS15960	0.45	-1.4
2,751	-		EX31_RS15960	0.45	-0.0
2,771	+		EX31_RS15960	0.49	-0.9
2,772	-		EX31_RS15960	0.49	+0.6
2,772	-		EX31_RS15960	0.49	-0.7
2,780	+		EX31_RS15960	0.51	-1.3
2,780	+		EX31_RS15960	0.51	-1.1
2,781	-		EX31_RS15960	0.51	+0.3
2,814	-		EX31_RS15960	0.57	+0.7
2,814	-		EX31_RS15960	0.57	-0.5
2,894	+		EX31_RS15960	0.71	+0.2
2,895	-		EX31_RS15960	0.71	-0.6
2,929	+		EX31_RS15960	0.77	-0.0
2,929	+		EX31_RS15960	0.77	-0.2
2,929	+		EX31_RS15960	0.77	-0.7
2,929	+		EX31_RS15960	0.77	+0.4
2,929	+		EX31_RS15960	0.77	-0.5
2,929	+		EX31_RS15960	0.77	+0.7
2,930	-		EX31_RS15960	0.77	-0.6
2,930	-		EX31_RS15960	0.77	+1.0
2,930	-		EX31_RS15960	0.77	+0.0
2,930	-		EX31_RS15960	0.77	+0.7
2,982	-		EX31_RS15960	0.87	+0.2
3,029	+				-1.3
3,056	+				-0.6
3,056	+				-0.7
3,056	+				+0.1
3,056	+				-1.0
3,056	+				+1.2
3,056	+				-2.0
3,057	-				+2.4
3,057	-				+2.2
3,057	-				-0.1
3,057	-				-0.1
3,057	-				-0.1
3,057	-				-0.9
3,057	-				+0.3
3,061	+				-0.2
3,061	+				-0.2
3,062	-				+0.1
3,069	-				-0.0
3,075	+				+0.2
3,076	-				+0.1
3,082	+				-0.8
3,091	+				-0.1
3,091	+				-0.6
3,092	-				-0.4
3,092	-				-1.3
3,101	+				+0.5
3,101	+				-0.2
3,102	-				+1.2
3,112	-				-0.5
3,112	-				-0.4
3,112	-				+0.1
3,112	-				-0.1
3,112	-				-1.8
3,114	+				+0.4
3,114	+				+1.6
3,114	+				-0.2
3,114	+				+0.4
3,114	+				+0.6
3,115	-				+0.7
3,115	-				-0.2
3,115	-				+0.1
3,115	-				+1.0
3,115	-				+1.8
3,115	-				-1.3
3,115	-				-1.2
3,115	-				-0.6
3,115	-				+0.1
3,133	+		EX31_RS15965	0.11	+0.0
3,133	+		EX31_RS15965	0.11	-0.8
3,133	+		EX31_RS15965	0.11	-1.6
3,133	+		EX31_RS15965	0.11	+0.2
3,134	-		EX31_RS15965	0.11	-0.2
3,134	-		EX31_RS15965	0.11	-0.0
3,156	-		EX31_RS15965	0.16	-1.0
3,156	-		EX31_RS15965	0.16	-0.4
3,156	-		EX31_RS15965	0.16	-0.4
3,225	-		EX31_RS15965	0.30	-0.2
3,225	-		EX31_RS15965	0.30	+0.7
3,237	-		EX31_RS15965	0.33	+0.4
3,264	+		EX31_RS15965	0.39	-0.4
3,308	+		EX31_RS15965	0.48	-0.3
3,308	+		EX31_RS15965	0.48	+1.9
3,308	+		EX31_RS15965	0.48	+0.5
3,309	-		EX31_RS15965	0.48	+0.4
3,312	+		EX31_RS15965	0.49	-0.2
3,313	-		EX31_RS15965	0.49	+0.3
3,313	-		EX31_RS15965	0.49	-0.0
3,336	-		EX31_RS15965	0.54	+0.1
3,337	+		EX31_RS15965	0.54	-1.3
3,337	+		EX31_RS15965	0.54	-0.7
3,337	+		EX31_RS15965	0.54	-0.0
3,337	+		EX31_RS15965	0.54	+0.1
3,337	+		EX31_RS15965	0.54	+1.0
3,338	-		EX31_RS15965	0.54	+1.2
3,338	-		EX31_RS15965	0.54	+0.1
3,338	-		EX31_RS15965	0.54	+0.3
3,338	-		EX31_RS15965	0.54	-0.1
3,338	-		EX31_RS15965	0.54	+0.1
3,345	+		EX31_RS15965	0.56	+0.4
3,345	+		EX31_RS15965	0.56	-0.8
3,345	+		EX31_RS15965	0.56	+0.5
3,345	+		EX31_RS15965	0.56	-0.3
3,346	-		EX31_RS15965	0.56	-0.5
3,346	-		EX31_RS15965	0.56	-0.2
3,346	-		EX31_RS15965	0.56	+1.4
3,346	-		EX31_RS15965	0.56	+0.5
3,346	-		EX31_RS15965	0.56	+1.1
3,346	-		EX31_RS15965	0.56	+0.9
3,346	-		EX31_RS15965	0.56	+0.3
3,346	-		EX31_RS15965	0.56	-0.0
3,346	-		EX31_RS15965	0.56	+0.6
3,371	+		EX31_RS15965	0.61	+1.0
3,371	+		EX31_RS15965	0.61	-1.3
3,371	+		EX31_RS15965	0.61	+0.1
3,372	-		EX31_RS15965	0.61	-0.3
3,372	-		EX31_RS15965	0.61	-0.6
3,372	-		EX31_RS15965	0.61	+0.1
3,372	-		EX31_RS15965	0.61	+0.0
3,372	-		EX31_RS15965	0.61	-0.6
3,372	-		EX31_RS15965	0.61	-0.6
3,372	-		EX31_RS15965	0.61	-0.5
3,372	-		EX31_RS15965	0.61	-0.0
3,372	-		EX31_RS15965	0.61	-0.5
3,372	-		EX31_RS15965	0.61	-0.8
3,373	+		EX31_RS15965	0.62	-1.5
3,373	+		EX31_RS15965	0.62	-0.4
3,373	+		EX31_RS15965	0.62	-2.1
3,373	+		EX31_RS15965	0.62	+0.0
3,373	+		EX31_RS15965	0.62	-0.6
3,373	+		EX31_RS15965	0.62	-1.8
3,373	+		EX31_RS15965	0.62	+0.3
3,373	+		EX31_RS15965	0.62	-1.0
3,373	+		EX31_RS15965	0.62	-0.5
3,373	+		EX31_RS15965	0.62	+1.0
3,373	+		EX31_RS15965	0.62	+0.9
3,373	+		EX31_RS15965	0.62	-0.2
3,374	-		EX31_RS15965	0.62	-0.7
3,374	-		EX31_RS15965	0.62	+0.3
3,374	-		EX31_RS15965	0.62	-0.2
3,374	-		EX31_RS15965	0.62	+0.7
3,374	-		EX31_RS15965	0.62	+1.0
3,374	-		EX31_RS15965	0.62	-1.9
3,374	-		EX31_RS15965	0.62	+0.6
3,374	-		EX31_RS15965	0.62	-0.3
3,374	-		EX31_RS15965	0.62	-0.2
3,374	-		EX31_RS15965	0.62	-0.1
3,374	-		EX31_RS15965	0.62	+0.1
3,374	-		EX31_RS15965	0.62	-0.3
3,374	-		EX31_RS15965	0.62	-0.1
3,374	-		EX31_RS15965	0.62	+0.7
3,374	-		EX31_RS15965	0.62	+0.9
3,374	-		EX31_RS15965	0.62	-0.1
3,374	-		EX31_RS15965	0.62	-1.6
3,374	-		EX31_RS15965	0.62	+0.2
3,374	-		EX31_RS15965	0.62	+1.1
3,374	-		EX31_RS15965	0.62	+0.6
3,374	-		EX31_RS15965	0.62	+0.1
3,374	-		EX31_RS15965	0.62	-0.3
3,483	-		EX31_RS15965	0.85	-1.3
3,520	+				-0.3
3,521	-				-0.8
3,521	-				-0.8
3,521	-				-0.6
3,521	-				-1.9
3,521	-				+1.0
3,521	-				+0.3
3,521	-				+0.3
3,531	+				-1.1
3,531	+				-0.0
3,531	+				+0.9
3,531	+				-1.3
3,531	+				+0.1
3,531	+				+0.4
3,531	+				-0.6
3,531	+				-0.7
3,531	+				+0.4
3,531	+				+0.2
3,532	-				+0.7
3,532	-				+0.2
3,532	-				+0.0
3,532	-				+0.2
3,532	-				-0.5
3,532	-				-0.5
3,532	-				-0.7
3,532	-				+1.2
3,535	+				-0.1
3,535	+				+0.2
3,535	+				+0.7
3,535	+				-1.0
3,535	+				-0.3
3,535	+				+0.7
3,535	+				+1.4
3,535	+				+0.1
3,536	-				-0.7
3,536	-				+0.3
3,536	-				-0.5
3,540	+				-0.5
3,540	+				+0.3
3,540	+				+0.8
3,540	+				+0.3
3,540	+				+0.4
3,540	+				+0.5
3,540	+				-0.5
3,540	+				-0.6
3,540	+				+0.3
3,540	+				-0.3
3,540	+				-0.7
3,540	+				-0.2
3,540	+				-0.4
3,541	-				-0.8
3,541	-				+0.4
3,541	-				-0.6
3,541	-				-0.3
3,541	-				+0.2
3,541	-				+0.7
3,541	-				-2.0
3,541	-				-0.5
3,541	-				-1.3
3,541	-				-0.4
3,541	-				-0.2
3,543	+				-0.4
3,543	+				-0.7
3,544	-				-0.1
3,544	-				+0.4
3,567	+				-0.2
3,567	+				-0.1
3,578	+				-0.3
3,578	+				+0.2
3,590	-				-0.0
3,611	-				-0.3
3,626	-				-1.1
3,626	-				-0.3
3,630	+				-0.3
3,631	-				+0.9
3,631	-				+0.1
3,631	-				+0.7
3,631	-				-0.2
3,634	+				+0.0
3,634	+				+0.3
3,634	+				+1.1
3,635	-				+0.7
3,635	-				-1.6
3,695	+		EX31_RS15970	0.14	+0.2
3,695	+		EX31_RS15970	0.14	-0.1
3,695	+		EX31_RS15970	0.14	+0.4
3,695	+		EX31_RS15970	0.14	+0.8
3,695	+		EX31_RS15970	0.14	+1.4
3,696	-		EX31_RS15970	0.15	-0.6
3,696	-		EX31_RS15970	0.15	+0.2
3,696	-		EX31_RS15970	0.15	+1.2
3,696	-		EX31_RS15970	0.15	-0.2
3,700	+		EX31_RS15970	0.15	+0.1
3,700	+		EX31_RS15970	0.15	-1.9
3,700	+		EX31_RS15970	0.15	-0.2
3,700	+		EX31_RS15970	0.15	+0.8
3,700	+		EX31_RS15970	0.15	+0.6
3,700	+		EX31_RS15970	0.15	-1.8
3,700	+		EX31_RS15970	0.15	+0.2
3,700	+		EX31_RS15970	0.15	+0.3
3,700	+		EX31_RS15970	0.15	-0.9
3,700	+		EX31_RS15970	0.15	-0.3
3,700	+		EX31_RS15970	0.15	+0.4
3,701	-		EX31_RS15970	0.15	-0.9
3,701	-		EX31_RS15970	0.15	+0.4
3,701	-		EX31_RS15970	0.15	-0.2
3,701	-		EX31_RS15970	0.15	-0.2
3,701	-		EX31_RS15970	0.15	+1.3
3,701	-		EX31_RS15970	0.15	+0.7
3,701	-		EX31_RS15970	0.15	-1.1
3,701	-		EX31_RS15970	0.15	-1.3
3,701	-		EX31_RS15970	0.15	-0.0
3,701	-		EX31_RS15970	0.15	-0.3
3,701	-		EX31_RS15970	0.15	+0.3
3,756	+		EX31_RS15970	0.20	+0.7
3,757	-		EX31_RS15970	0.20	+0.3
3,757	-		EX31_RS15970	0.20	-1.1
3,819	+		EX31_RS15970	0.25	-0.1
3,820	-		EX31_RS15970	0.25	-0.5
3,820	-		EX31_RS15970	0.25	-0.8
3,847	+		EX31_RS15970	0.27	+0.7
3,847	+		EX31_RS15970	0.27	-0.2
3,847	+		EX31_RS15970	0.27	+0.1
3,847	+		EX31_RS15970	0.27	+0.8
3,847	+		EX31_RS15970	0.27	-0.6
3,847	+		EX31_RS15970	0.27	+0.1
3,847	+		EX31_RS15970	0.27	+1.9
3,847	+		EX31_RS15970	0.27	-0.6
3,847	+		EX31_RS15970	0.27	+0.2
3,848	-		EX31_RS15970	0.28	-0.6
3,848	-		EX31_RS15970	0.28	+0.5
3,848	-		EX31_RS15970	0.28	+0.3
3,848	-		EX31_RS15970	0.28	-0.9
3,848	-		EX31_RS15970	0.28	-0.3
3,848	-		EX31_RS15970	0.28	+0.1
3,848	-		EX31_RS15970	0.28	+0.1
3,848	-		EX31_RS15970	0.28	+0.3
3,848	-		EX31_RS15970	0.28	-0.6
3,848	-		EX31_RS15970	0.28	+0.1
3,848	-		EX31_RS15970	0.28	-0.1
3,848	-		EX31_RS15970	0.28	-0.8
3,848	-		EX31_RS15970	0.28	+0.3
3,849	+		EX31_RS15970	0.28	-0.1
3,849	+		EX31_RS15970	0.28	+0.8
3,849	+		EX31_RS15970	0.28	-0.2
3,849	+		EX31_RS15970	0.28	-0.3
3,850	-		EX31_RS15970	0.28	+0.3
3,850	-		EX31_RS15970	0.28	+0.2
3,850	-		EX31_RS15970	0.28	+0.2
3,850	-		EX31_RS15970	0.28	-0.4
3,850	-		EX31_RS15970	0.28	+0.1
3,850	-		EX31_RS15970	0.28	+0.5
3,850	-		EX31_RS15970	0.28	-1.0
3,850	-		EX31_RS15970	0.28	+0.1
3,850	-		EX31_RS15970	0.28	-1.1
3,850	-		EX31_RS15970	0.28	-1.8
3,850	-		EX31_RS15970	0.28	+0.1
3,850	-		EX31_RS15970	0.28	+0.1
3,861	+		EX31_RS15970	0.29	+1.0
3,884	+		EX31_RS15970	0.31	+1.1
3,884	+		EX31_RS15970	0.31	+0.3
3,884	+		EX31_RS15970	0.31	+1.3
3,885	-		EX31_RS15970	0.31	-1.1
3,885	-		EX31_RS15970	0.31	-0.1
3,885	-		EX31_RS15970	0.31	+0.1
3,885	-		EX31_RS15970	0.31	+0.6
3,901	-		EX31_RS15970	0.32	+0.3
3,980	+		EX31_RS15970	0.39	-0.0
3,990	+		EX31_RS15970	0.40	+0.2
3,990	+		EX31_RS15970	0.40	-0.2
4,030	+		EX31_RS15970	0.43	+1.1
4,031	-		EX31_RS15970	0.43	+0.4
4,031	-		EX31_RS15970	0.43	-0.1
4,031	-		EX31_RS15970	0.43	+0.1
4,031	-		EX31_RS15970	0.43	+0.0
4,031	-		EX31_RS15970	0.43	+0.3
4,031	-		EX31_RS15970	0.43	+0.5
4,031	-		EX31_RS15970	0.43	-0.2