Strain Fitness in Rahnella sp. WP5 around EX31_RS11310

Experiment: Ammonium chloride (N); RCH2 media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS11300 and EX31_RS11305 are separated by 77 nucleotidesEX31_RS11305 and EX31_RS11310 are separated by 11 nucleotidesEX31_RS11310 and EX31_RS11315 are separated by 6 nucleotidesEX31_RS11315 and EX31_RS11320 are separated by 113 nucleotides EX31_RS11300: EX31_RS11300 - flagellar hook protein FlgE, at 192,685 to 193,929 _RS11300 EX31_RS11305: EX31_RS11305 - flagellar hook assembly protein FlgD, at 194,007 to 194,711 _RS11305 EX31_RS11310: EX31_RS11310 - flagellar basal body rod protein FlgC, at 194,723 to 195,127 _RS11310 EX31_RS11315: EX31_RS11315 - flagellar basal body rod protein FlgB, at 195,134 to 195,544 _RS11315 EX31_RS11320: EX31_RS11320 - flagellar basal body P-ring formation protein FlgA, at 195,658 to 196,440 _RS11320 Position (kb) 194 195 196Strain fitness (log2 ratio) -2 -1 0 1 2at 193.943 kb on + strandat 193.943 kb on + strandat 193.944 kb on - strandat 193.944 kb on - strandat 193.944 kb on - strandat 193.944 kb on - strandat 193.944 kb on - strandat 194.091 kb on + strand, within EX31_RS11305at 194.092 kb on - strand, within EX31_RS11305at 194.092 kb on - strand, within EX31_RS11305at 194.092 kb on - strand, within EX31_RS11305at 194.092 kb on - strand, within EX31_RS11305at 194.110 kb on + strand, within EX31_RS11305at 194.110 kb on + strand, within EX31_RS11305at 194.111 kb on - strand, within EX31_RS11305at 194.111 kb on - strand, within EX31_RS11305at 194.111 kb on - strand, within EX31_RS11305at 194.111 kb on - strand, within EX31_RS11305at 194.171 kb on - strand, within EX31_RS11305at 194.171 kb on - strand, within EX31_RS11305at 194.208 kb on - strand, within EX31_RS11305at 194.219 kb on + strand, within EX31_RS11305at 194.220 kb on - strand, within EX31_RS11305at 194.220 kb on - strand, within EX31_RS11305at 194.220 kb on - strand, within EX31_RS11305at 194.220 kb on - strand, within EX31_RS11305at 194.221 kb on + strand, within EX31_RS11305at 194.222 kb on - strand, within EX31_RS11305at 194.222 kb on - strand, within EX31_RS11305at 194.222 kb on - strand, within EX31_RS11305at 194.222 kb on - strand, within EX31_RS11305at 194.222 kb on - strand, within EX31_RS11305at 194.222 kb on - strand, within EX31_RS11305at 194.222 kb on - strand, within EX31_RS11305at 194.222 kb on - strand, within EX31_RS11305at 194.478 kb on - strand, within EX31_RS11305at 194.608 kb on - strand, within EX31_RS11305at 194.702 kb on + strandat 194.702 kb on + strandat 194.794 kb on - strand, within EX31_RS11310at 194.794 kb on - strand, within EX31_RS11310at 194.840 kb on + strand, within EX31_RS11310at 194.840 kb on + strand, within EX31_RS11310at 194.841 kb on - strand, within EX31_RS11310at 194.841 kb on - strand, within EX31_RS11310at 194.841 kb on - strand, within EX31_RS11310at 194.841 kb on - strand, within EX31_RS11310at 194.841 kb on - strand, within EX31_RS11310at 194.841 kb on - strand, within EX31_RS11310at 194.841 kb on - strand, within EX31_RS11310at 194.859 kb on + strand, within EX31_RS11310at 194.860 kb on - strand, within EX31_RS11310at 194.860 kb on - strand, within EX31_RS11310at 194.860 kb on - strand, within EX31_RS11310at 194.860 kb on - strand, within EX31_RS11310at 194.895 kb on + strand, within EX31_RS11310at 194.895 kb on + strand, within EX31_RS11310at 194.896 kb on - strand, within EX31_RS11310at 195.002 kb on - strand, within EX31_RS11310at 195.011 kb on - strand, within EX31_RS11310at 195.050 kb on - strand, within EX31_RS11310at 195.113 kb on - strandat 195.132 kb on + strandat 195.133 kb on - strandat 195.133 kb on - strandat 195.136 kb on - strandat 195.311 kb on + strand, within EX31_RS11315at 195.311 kb on + strand, within EX31_RS11315at 195.312 kb on - strand, within EX31_RS11315at 195.312 kb on - strand, within EX31_RS11315at 195.312 kb on - strand, within EX31_RS11315at 195.312 kb on - strand, within EX31_RS11315at 195.432 kb on + strand, within EX31_RS11315at 195.519 kb on - strandat 195.519 kb on - strandat 195.582 kb on + strandat 195.582 kb on + strandat 195.582 kb on + strandat 195.582 kb on + strandat 195.583 kb on - strandat 195.583 kb on - strandat 195.615 kb on - strandat 195.615 kb on - strandat 195.615 kb on - strandat 195.634 kb on - strandat 195.645 kb on + strandat 195.645 kb on + strandat 195.666 kb on - strandat 195.680 kb on + strandat 195.680 kb on + strandat 195.680 kb on + strandat 195.680 kb on + strandat 195.681 kb on - strandat 195.683 kb on + strandat 195.683 kb on + strandat 195.683 kb on + strandat 195.684 kb on - strandat 195.698 kb on + strandat 195.699 kb on + strandat 195.700 kb on - strandat 195.726 kb on - strandat 195.732 kb on + strandat 195.732 kb on + strandat 195.787 kb on + strand, within EX31_RS11320at 195.787 kb on + strand, within EX31_RS11320at 195.788 kb on - strand, within EX31_RS11320at 195.837 kb on + strand, within EX31_RS11320at 195.843 kb on + strand, within EX31_RS11320at 195.887 kb on - strand, within EX31_RS11320at 195.887 kb on - strand, within EX31_RS11320at 195.953 kb on + strand, within EX31_RS11320at 195.954 kb on - strand, within EX31_RS11320at 195.954 kb on - strand, within EX31_RS11320at 195.967 kb on - strand, within EX31_RS11320at 196.020 kb on + strand, within EX31_RS11320at 196.040 kb on + strand, within EX31_RS11320at 196.040 kb on + strand, within EX31_RS11320at 196.040 kb on + strand, within EX31_RS11320at 196.041 kb on - strand, within EX31_RS11320at 196.069 kb on + strand, within EX31_RS11320

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); RCH2 media; no shaking
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193,943 + -1.0
193,943 + +0.2
193,944 - -0.5
193,944 - -1.7
193,944 - +2.0
193,944 - -1.3
193,944 - +0.2
194,091 + EX31_RS11305 0.12 -1.5
194,092 - EX31_RS11305 0.12 -0.8
194,092 - EX31_RS11305 0.12 -0.2
194,092 - EX31_RS11305 0.12 +1.3
194,092 - EX31_RS11305 0.12 -1.2
194,110 + EX31_RS11305 0.15 -0.1
194,110 + EX31_RS11305 0.15 -0.8
194,111 - EX31_RS11305 0.15 -0.4
194,111 - EX31_RS11305 0.15 -0.1
194,111 - EX31_RS11305 0.15 -1.2
194,111 - EX31_RS11305 0.15 -1.6
194,171 - EX31_RS11305 0.23 -0.5
194,171 - EX31_RS11305 0.23 -2.0
194,208 - EX31_RS11305 0.29 +0.7
194,219 + EX31_RS11305 0.30 +0.2
194,220 - EX31_RS11305 0.30 -0.1
194,220 - EX31_RS11305 0.30 -1.4
194,220 - EX31_RS11305 0.30 +0.0
194,220 - EX31_RS11305 0.30 +0.8
194,221 + EX31_RS11305 0.30 +0.5
194,222 - EX31_RS11305 0.30 -0.6
194,222 - EX31_RS11305 0.30 -0.4
194,222 - EX31_RS11305 0.30 +0.8
194,222 - EX31_RS11305 0.30 -1.9
194,222 - EX31_RS11305 0.30 +1.6
194,222 - EX31_RS11305 0.30 -0.4
194,222 - EX31_RS11305 0.30 -1.9
194,222 - EX31_RS11305 0.30 +0.0
194,478 - EX31_RS11305 0.67 -2.7
194,608 - EX31_RS11305 0.85 -0.3
194,702 + +2.6
194,702 + -1.8
194,794 - EX31_RS11310 0.18 -0.5
194,794 - EX31_RS11310 0.18 +1.0
194,840 + EX31_RS11310 0.29 +0.8
194,840 + EX31_RS11310 0.29 -1.5
194,841 - EX31_RS11310 0.29 -1.4
194,841 - EX31_RS11310 0.29 +0.0
194,841 - EX31_RS11310 0.29 -2.0
194,841 - EX31_RS11310 0.29 -1.0
194,841 - EX31_RS11310 0.29 -0.2
194,841 - EX31_RS11310 0.29 -2.3
194,841 - EX31_RS11310 0.29 -0.3
194,859 + EX31_RS11310 0.34 -0.5
194,860 - EX31_RS11310 0.34 -0.8
194,860 - EX31_RS11310 0.34 -0.8
194,860 - EX31_RS11310 0.34 -0.5
194,860 - EX31_RS11310 0.34 +1.5
194,895 + EX31_RS11310 0.42 -0.8
194,895 + EX31_RS11310 0.42 -0.8
194,896 - EX31_RS11310 0.43 -0.3
195,002 - EX31_RS11310 0.69 -1.4
195,011 - EX31_RS11310 0.71 -1.3
195,050 - EX31_RS11310 0.81 +0.1
195,113 - -1.5
195,132 + -1.1
195,133 - +0.3
195,133 - -0.8
195,136 - -1.4
195,311 + EX31_RS11315 0.43 +0.5
195,311 + EX31_RS11315 0.43 -0.5
195,312 - EX31_RS11315 0.43 -0.0
195,312 - EX31_RS11315 0.43 +1.6
195,312 - EX31_RS11315 0.43 -1.4
195,312 - EX31_RS11315 0.43 +1.2
195,432 + EX31_RS11315 0.73 -2.5
195,519 - -0.6
195,519 - -2.0
195,582 + +0.8
195,582 + -2.3
195,582 + +2.0
195,582 + -0.4
195,583 - -0.8
195,583 - -1.3
195,615 - -1.0
195,615 - -1.8
195,615 - +2.0
195,634 - +1.6
195,645 + +0.7
195,645 + +0.8
195,666 - +0.8
195,680 + +0.8
195,680 + +0.0
195,680 + -1.5
195,680 + +0.7
195,681 - -0.8
195,683 + -0.1
195,683 + -0.7
195,683 + +0.1
195,684 - -0.1
195,698 + +0.2
195,699 + -1.0
195,700 - +1.6
195,726 - +0.1
195,732 + -0.1
195,732 + -0.0
195,787 + EX31_RS11320 0.16 +0.1
195,787 + EX31_RS11320 0.16 +0.3
195,788 - EX31_RS11320 0.17 -0.4
195,837 + EX31_RS11320 0.23 +0.6
195,843 + EX31_RS11320 0.24 -0.7
195,887 - EX31_RS11320 0.29 +1.5
195,887 - EX31_RS11320 0.29 -0.1
195,953 + EX31_RS11320 0.38 +1.0
195,954 - EX31_RS11320 0.38 +2.0
195,954 - EX31_RS11320 0.38 +0.3
195,967 - EX31_RS11320 0.39 +1.5
196,020 + EX31_RS11320 0.46 -0.8
196,040 + EX31_RS11320 0.49 +0.7
196,040 + EX31_RS11320 0.49 -1.0
196,040 + EX31_RS11320 0.49 +0.0
196,041 - EX31_RS11320 0.49 -0.5
196,069 + EX31_RS11320 0.52 -2.7

Or see this region's nucleotide sequence