Strain Fitness in Rahnella sp. WP5 around EX31_RS10755

Experiment: Ammonium chloride (N); RCH2 media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS10745 and EX31_RS10750 overlap by 1 nucleotidesEX31_RS10750 and EX31_RS10755 are separated by 94 nucleotidesEX31_RS10755 and EX31_RS25320 are separated by 6 nucleotidesEX31_RS25320 and EX31_RS10760 are separated by 407 nucleotides EX31_RS10745: EX31_RS10745 - chromate transporter, at 64,892 to 65,476 _RS10745 EX31_RS10750: EX31_RS10750 - chromate transporter, at 65,476 to 65,994 _RS10750 EX31_RS10755: EX31_RS10755 - glycoside hydrolase family 3 protein, at 66,089 to 68,050 _RS10755 EX31_RS25320: EX31_RS25320 - methyltransferase, at 68,057 to 68,236 _RS25320 EX31_RS10760: EX31_RS10760 - TonB-dependent siderophore receptor, at 68,644 to 70,755 _RS10760 Position (kb) 66 67 68 69Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 65.234 kb on + strand, within EX31_RS10745at 65.234 kb on + strand, within EX31_RS10745at 65.234 kb on + strand, within EX31_RS10745at 65.234 kb on + strand, within EX31_RS10745at 65.234 kb on + strand, within EX31_RS10745at 65.234 kb on + strand, within EX31_RS10745at 65.234 kb on + strand, within EX31_RS10745at 65.234 kb on + strand, within EX31_RS10745at 65.234 kb on + strand, within EX31_RS10745at 65.235 kb on - strand, within EX31_RS10745at 65.304 kb on + strand, within EX31_RS10745at 65.304 kb on + strand, within EX31_RS10745at 65.382 kb on + strand, within EX31_RS10745at 65.468 kb on - strandat 65.486 kb on + strandat 65.509 kb on - strandat 65.545 kb on - strand, within EX31_RS10750at 65.652 kb on + strand, within EX31_RS10750at 65.746 kb on - strand, within EX31_RS10750at 65.746 kb on - strand, within EX31_RS10750at 65.801 kb on + strand, within EX31_RS10750at 65.855 kb on + strand, within EX31_RS10750at 65.914 kb on - strand, within EX31_RS10750at 66.033 kb on + strandat 66.033 kb on + strandat 66.033 kb on + strandat 66.034 kb on - strandat 66.034 kb on - strandat 66.063 kb on - strandat 66.063 kb on - strandat 66.064 kb on + strandat 66.064 kb on + strandat 66.213 kb on + strandat 66.213 kb on + strandat 66.214 kb on - strandat 66.254 kb on + strandat 66.254 kb on + strandat 66.418 kb on + strand, within EX31_RS10755at 66.573 kb on - strand, within EX31_RS10755at 66.589 kb on + strand, within EX31_RS10755at 66.628 kb on - strand, within EX31_RS10755at 66.763 kb on + strand, within EX31_RS10755at 66.764 kb on - strand, within EX31_RS10755at 66.803 kb on - strand, within EX31_RS10755at 66.803 kb on - strand, within EX31_RS10755at 66.852 kb on + strand, within EX31_RS10755at 66.984 kb on - strand, within EX31_RS10755at 67.035 kb on - strand, within EX31_RS10755at 67.035 kb on - strand, within EX31_RS10755at 67.035 kb on - strand, within EX31_RS10755at 67.035 kb on - strand, within EX31_RS10755at 67.134 kb on - strand, within EX31_RS10755at 67.528 kb on - strand, within EX31_RS10755at 67.554 kb on + strand, within EX31_RS10755at 67.586 kb on + strand, within EX31_RS10755at 67.587 kb on - strand, within EX31_RS10755at 67.593 kb on + strand, within EX31_RS10755at 67.593 kb on + strand, within EX31_RS10755at 67.593 kb on + strand, within EX31_RS10755at 67.593 kb on + strand, within EX31_RS10755at 67.928 kb on + strandat 67.928 kb on + strandat 67.928 kb on + strandat 68.196 kb on + strand, within EX31_RS25320at 68.230 kb on + strandat 68.231 kb on - strandat 68.231 kb on - strandat 68.280 kb on + strandat 68.286 kb on + strandat 68.422 kb on + strandat 68.583 kb on + strandat 68.584 kb on - strandat 68.584 kb on - strandat 68.586 kb on + strandat 68.586 kb on + strandat 68.586 kb on + strandat 68.586 kb on + strandat 68.587 kb on - strandat 68.601 kb on + strandat 68.601 kb on + strandat 68.601 kb on + strandat 68.624 kb on + strandat 68.624 kb on + strandat 68.624 kb on + strandat 68.624 kb on + strandat 68.625 kb on - strandat 68.628 kb on + strandat 68.629 kb on - strandat 68.630 kb on + strandat 68.637 kb on + strandat 68.643 kb on + strandat 68.644 kb on - strandat 68.912 kb on - strand, within EX31_RS10760at 69.047 kb on - strand, within EX31_RS10760

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); RCH2 media; no shaking
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65,234 + EX31_RS10745 0.58 +0.7
65,234 + EX31_RS10745 0.58 +0.8
65,234 + EX31_RS10745 0.58 +1.0
65,234 + EX31_RS10745 0.58 +0.8
65,234 + EX31_RS10745 0.58 +1.3
65,234 + EX31_RS10745 0.58 +0.6
65,234 + EX31_RS10745 0.58 +1.9
65,234 + EX31_RS10745 0.58 -0.7
65,234 + EX31_RS10745 0.58 +0.3
65,235 - EX31_RS10745 0.59 -0.8
65,304 + EX31_RS10745 0.70 +0.7
65,304 + EX31_RS10745 0.70 +0.5
65,382 + EX31_RS10745 0.84 +0.1
65,468 - -0.7
65,486 + -1.0
65,509 - +0.0
65,545 - EX31_RS10750 0.13 +0.7
65,652 + EX31_RS10750 0.34 +1.8
65,746 - EX31_RS10750 0.52 +0.7
65,746 - EX31_RS10750 0.52 +0.4
65,801 + EX31_RS10750 0.63 +1.3
65,855 + EX31_RS10750 0.73 -0.3
65,914 - EX31_RS10750 0.84 +0.2
66,033 + -1.5
66,033 + +0.0
66,033 + +0.5
66,034 - +0.3
66,034 - -1.4
66,063 - +2.9
66,063 - +0.5
66,064 + +1.7
66,064 + +2.0
66,213 + +0.8
66,213 + -0.3
66,214 - +0.6
66,254 + +1.3
66,254 + +0.0
66,418 + EX31_RS10755 0.17 +3.0
66,573 - EX31_RS10755 0.25 -0.7
66,589 + EX31_RS10755 0.25 +1.2
66,628 - EX31_RS10755 0.27 +1.0
66,763 + EX31_RS10755 0.34 +1.2
66,764 - EX31_RS10755 0.34 -1.3
66,803 - EX31_RS10755 0.36 -1.3
66,803 - EX31_RS10755 0.36 +1.4
66,852 + EX31_RS10755 0.39 +0.5
66,984 - EX31_RS10755 0.46 +2.0
67,035 - EX31_RS10755 0.48 -0.3
67,035 - EX31_RS10755 0.48 +0.2
67,035 - EX31_RS10755 0.48 -0.1
67,035 - EX31_RS10755 0.48 -0.5
67,134 - EX31_RS10755 0.53 +0.1
67,528 - EX31_RS10755 0.73 +1.0
67,554 + EX31_RS10755 0.75 +1.5
67,586 + EX31_RS10755 0.76 -0.2
67,587 - EX31_RS10755 0.76 +0.9
67,593 + EX31_RS10755 0.77 +2.6
67,593 + EX31_RS10755 0.77 +1.9
67,593 + EX31_RS10755 0.77 -0.8
67,593 + EX31_RS10755 0.77 -1.0
67,928 + +0.6
67,928 + +0.2
67,928 + +2.5
68,196 + EX31_RS25320 0.77 +1.0
68,230 + +0.1
68,231 - +0.7
68,231 - -1.2
68,280 + -0.9
68,286 + +0.3
68,422 + +1.5
68,583 + +1.7
68,584 - +5.0
68,584 - -1.4
68,586 + -0.2
68,586 + +1.2
68,586 + +0.4
68,586 + -0.6
68,587 - -0.5
68,601 + -0.7
68,601 + -0.9
68,601 + +2.5
68,624 + -0.4
68,624 + +0.6
68,624 + +0.8
68,624 + +1.0
68,625 - +1.8
68,628 + -1.6
68,629 - +0.0
68,630 + +0.8
68,637 + -1.7
68,643 + -0.5
68,644 - -0.3
68,912 - EX31_RS10760 0.13 -0.5
69,047 - EX31_RS10760 0.19 +0.6

Or see this region's nucleotide sequence