Experiment: Ammonium chloride (N); RCH2 media; no shaking
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS10525 and EX31_RS10530 are separated by 114 nucleotides EX31_RS10530 and EX31_RS10535 are separated by 744 nucleotides
EX31_RS10525: EX31_RS10525 - AI-2E family transporter, at 19,170 to 20,279
_RS10525
EX31_RS10530: EX31_RS10530 - anti-adapter protein IraP, at 20,394 to 20,735
_RS10530
EX31_RS10535: EX31_RS10535 - GtrA family protein, at 21,480 to 21,839
_RS10535
Position (kb) 20
21 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 19.408 kb on + strand, within EX31_RS10525 at 19.408 kb on + strand, within EX31_RS10525 at 19.409 kb on - strand, within EX31_RS10525 at 19.599 kb on - strand, within EX31_RS10525 at 19.599 kb on - strand, within EX31_RS10525 at 19.605 kb on + strand, within EX31_RS10525 at 19.630 kb on + strand, within EX31_RS10525 at 19.630 kb on + strand, within EX31_RS10525 at 19.631 kb on - strand, within EX31_RS10525 at 19.631 kb on - strand, within EX31_RS10525 at 19.634 kb on + strand, within EX31_RS10525 at 19.634 kb on + strand, within EX31_RS10525 at 19.635 kb on - strand, within EX31_RS10525 at 19.635 kb on - strand, within EX31_RS10525 at 19.635 kb on - strand, within EX31_RS10525 at 19.635 kb on - strand, within EX31_RS10525 at 19.677 kb on + strand, within EX31_RS10525 at 19.677 kb on + strand, within EX31_RS10525 at 19.677 kb on + strand, within EX31_RS10525 at 19.677 kb on + strand, within EX31_RS10525 at 19.678 kb on - strand, within EX31_RS10525 at 19.678 kb on - strand, within EX31_RS10525 at 19.678 kb on - strand, within EX31_RS10525 at 19.752 kb on + strand, within EX31_RS10525 at 19.756 kb on + strand, within EX31_RS10525 at 19.756 kb on + strand, within EX31_RS10525 at 19.757 kb on - strand, within EX31_RS10525 at 19.757 kb on - strand, within EX31_RS10525 at 19.772 kb on + strand, within EX31_RS10525 at 19.804 kb on + strand, within EX31_RS10525 at 19.804 kb on + strand, within EX31_RS10525 at 19.831 kb on + strand, within EX31_RS10525 at 19.860 kb on + strand, within EX31_RS10525 at 19.943 kb on + strand, within EX31_RS10525 at 19.943 kb on + strand, within EX31_RS10525 at 20.003 kb on + strand, within EX31_RS10525 at 20.050 kb on + strand, within EX31_RS10525 at 20.051 kb on - strand, within EX31_RS10525 at 20.131 kb on - strand, within EX31_RS10525 at 20.131 kb on - strand, within EX31_RS10525 at 20.131 kb on - strand, within EX31_RS10525 at 20.320 kb on + strand at 20.320 kb on + strand at 20.321 kb on - strand at 20.321 kb on - strand at 20.355 kb on + strand at 20.355 kb on + strand at 20.356 kb on - strand at 20.356 kb on - strand at 20.356 kb on - strand at 20.365 kb on + strand at 20.365 kb on + strand at 20.365 kb on + strand at 20.365 kb on + strand at 20.365 kb on + strand at 20.366 kb on - strand at 20.369 kb on + strand at 20.403 kb on - strand at 20.410 kb on + strand at 20.410 kb on + strand at 20.410 kb on + strand at 20.410 kb on + strand at 20.410 kb on + strand at 20.411 kb on - strand at 20.459 kb on + strand, within EX31_RS10530 at 20.460 kb on - strand, within EX31_RS10530 at 20.498 kb on + strand, within EX31_RS10530 at 20.598 kb on - strand, within EX31_RS10530 at 20.598 kb on - strand, within EX31_RS10530 at 20.598 kb on - strand, within EX31_RS10530 at 20.598 kb on - strand, within EX31_RS10530 at 20.609 kb on + strand, within EX31_RS10530 at 20.733 kb on + strand at 20.738 kb on + strand at 20.738 kb on + strand at 20.751 kb on + strand at 20.831 kb on - strand at 20.831 kb on - strand at 20.880 kb on - strand at 20.899 kb on + strand at 20.934 kb on + strand at 21.127 kb on + strand at 21.183 kb on + strand at 21.183 kb on + strand at 21.184 kb on - strand at 21.184 kb on - strand at 21.223 kb on - strand at 21.225 kb on - strand at 21.225 kb on - strand at 21.225 kb on - strand at 21.225 kb on - strand at 21.225 kb on - strand at 21.225 kb on - strand at 21.253 kb on + strand at 21.254 kb on - strand at 21.256 kb on - strand at 21.256 kb on - strand at 21.256 kb on - strand at 21.256 kb on - strand at 21.256 kb on - strand at 21.283 kb on - strand at 21.320 kb on + strand at 21.320 kb on + strand at 21.321 kb on - strand at 21.321 kb on - strand at 21.321 kb on - strand at 21.321 kb on - strand at 21.321 kb on - strand at 21.397 kb on - strand at 21.430 kb on + strand at 21.431 kb on - strand at 21.431 kb on - strand at 21.473 kb on + strand at 21.475 kb on + strand at 21.475 kb on + strand at 21.510 kb on - strand at 21.556 kb on + strand, within EX31_RS10535 at 21.666 kb on - strand, within EX31_RS10535
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N); RCH2 media; no shaking remove 19,408 + EX31_RS10525 0.21 +0.3 19,408 + EX31_RS10525 0.21 +1.0 19,409 - EX31_RS10525 0.22 +1.2 19,599 - EX31_RS10525 0.39 -1.1 19,599 - EX31_RS10525 0.39 +0.0 19,605 + EX31_RS10525 0.39 +1.0 19,630 + EX31_RS10525 0.41 -0.0 19,630 + EX31_RS10525 0.41 +1.4 19,631 - EX31_RS10525 0.42 -1.1 19,631 - EX31_RS10525 0.42 +1.2 19,634 + EX31_RS10525 0.42 -0.5 19,634 + EX31_RS10525 0.42 +0.8 19,635 - EX31_RS10525 0.42 +0.4 19,635 - EX31_RS10525 0.42 +1.0 19,635 - EX31_RS10525 0.42 +0.2 19,635 - EX31_RS10525 0.42 -0.4 19,677 + EX31_RS10525 0.46 +0.5 19,677 + EX31_RS10525 0.46 -1.0 19,677 + EX31_RS10525 0.46 +1.0 19,677 + EX31_RS10525 0.46 -0.2 19,678 - EX31_RS10525 0.46 +1.5 19,678 - EX31_RS10525 0.46 +0.5 19,678 - EX31_RS10525 0.46 -0.5 19,752 + EX31_RS10525 0.52 -0.2 19,756 + EX31_RS10525 0.53 +0.5 19,756 + EX31_RS10525 0.53 -0.3 19,757 - EX31_RS10525 0.53 +0.1 19,757 - EX31_RS10525 0.53 +1.0 19,772 + EX31_RS10525 0.54 -0.5 19,804 + EX31_RS10525 0.57 -0.7 19,804 + EX31_RS10525 0.57 +1.0 19,831 + EX31_RS10525 0.60 -0.5 19,860 + EX31_RS10525 0.62 -0.3 19,943 + EX31_RS10525 0.70 +0.3 19,943 + EX31_RS10525 0.70 -1.0 20,003 + EX31_RS10525 0.75 +1.0 20,050 + EX31_RS10525 0.79 +0.9 20,051 - EX31_RS10525 0.79 +1.5 20,131 - EX31_RS10525 0.87 +1.4 20,131 - EX31_RS10525 0.87 +2.0 20,131 - EX31_RS10525 0.87 +2.0 20,320 + +0.3 20,320 + +0.6 20,321 - +0.8 20,321 - -0.5 20,355 + +0.2 20,355 + +0.9 20,356 - +1.3 20,356 - -0.1 20,356 - -0.5 20,365 + -0.1 20,365 + +2.4 20,365 + -1.1 20,365 + -0.1 20,365 + +1.6 20,366 - +0.0 20,369 + +1.0 20,403 - +0.7 20,410 + -0.0 20,410 + +0.3 20,410 + +1.5 20,410 + -0.5 20,410 + +0.0 20,411 - +0.0 20,459 + EX31_RS10530 0.19 -0.1 20,460 - EX31_RS10530 0.19 +2.7 20,498 + EX31_RS10530 0.30 -1.4 20,598 - EX31_RS10530 0.60 -1.3 20,598 - EX31_RS10530 0.60 +1.0 20,598 - EX31_RS10530 0.60 +0.3 20,598 - EX31_RS10530 0.60 +1.5 20,609 + EX31_RS10530 0.63 +1.0 20,733 + +0.2 20,738 + -0.1 20,738 + +1.2 20,751 + +1.2 20,831 - +0.4 20,831 - +0.2 20,880 - +1.5 20,899 + +0.0 20,934 + +1.0 21,127 + -0.1 21,183 + +1.5 21,183 + +1.5 21,184 - +0.0 21,184 - +2.0 21,223 - -0.2 21,225 - -2.0 21,225 - +0.5 21,225 - -1.0 21,225 - +0.2 21,225 - -0.6 21,225 - +0.5 21,253 + +0.7 21,254 - +0.7 21,256 - -1.0 21,256 - -0.4 21,256 - +0.5 21,256 - -0.4 21,256 - -0.3 21,283 - -0.3 21,320 + +1.6 21,320 + -0.4 21,321 - +0.2 21,321 - -1.1 21,321 - +0.8 21,321 - +0.2 21,321 - +0.8 21,397 - +1.6 21,430 + -1.0 21,431 - +4.0 21,431 - -0.4 21,473 + -0.4 21,475 + +0.3 21,475 + +0.6 21,510 - +0.0 21,556 + EX31_RS10535 0.21 +1.8 21,666 - EX31_RS10535 0.52 -0.3
Or see this region's nucleotide sequence