Strain Fitness in Rahnella sp. WP5 around EX31_RS08205

Experiment: Ammonium chloride (N); RCH2 media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS08195 and EX31_RS08200 are separated by 61 nucleotidesEX31_RS08200 and EX31_RS08205 are separated by 33 nucleotidesEX31_RS08205 and EX31_RS08210 are separated by 80 nucleotidesEX31_RS08210 and EX31_RS08215 are separated by 278 nucleotides EX31_RS08195: EX31_RS08195 - RNA polymerase sigma factor RpoD, at 132,951 to 134,789 _RS08195 EX31_RS08200: EX31_RS08200 - hypothetical protein, at 134,851 to 135,318 _RS08200 EX31_RS08205: EX31_RS08205 - hypothetical protein, at 135,352 to 135,954 _RS08205 EX31_RS08210: EX31_RS08210 - hypothetical protein, at 136,035 to 136,526 _RS08210 EX31_RS08215: EX31_RS08215 - G/U mismatch-specific DNA glycosylase, at 136,805 to 137,308 _RS08215 Position (kb) 135 136Strain fitness (log2 ratio) -2 -1 0 1 2at 134.850 kb on - strandat 134.887 kb on - strandat 134.936 kb on - strand, within EX31_RS08200at 134.936 kb on - strand, within EX31_RS08200at 135.050 kb on + strand, within EX31_RS08200at 135.080 kb on - strand, within EX31_RS08200at 135.105 kb on - strand, within EX31_RS08200at 135.145 kb on - strand, within EX31_RS08200at 135.171 kb on + strand, within EX31_RS08200at 135.172 kb on - strand, within EX31_RS08200at 135.322 kb on - strandat 135.336 kb on - strandat 135.401 kb on + strandat 135.401 kb on + strandat 135.401 kb on + strandat 135.402 kb on - strandat 135.406 kb on - strandat 135.406 kb on - strandat 135.471 kb on + strand, within EX31_RS08205at 135.473 kb on + strand, within EX31_RS08205at 135.474 kb on - strand, within EX31_RS08205at 135.474 kb on - strand, within EX31_RS08205at 135.474 kb on - strand, within EX31_RS08205at 135.495 kb on - strand, within EX31_RS08205at 135.567 kb on + strand, within EX31_RS08205at 135.567 kb on + strand, within EX31_RS08205at 135.568 kb on - strand, within EX31_RS08205at 135.599 kb on - strand, within EX31_RS08205at 135.620 kb on + strand, within EX31_RS08205at 135.620 kb on + strand, within EX31_RS08205at 135.620 kb on + strand, within EX31_RS08205at 135.620 kb on + strand, within EX31_RS08205at 135.620 kb on + strand, within EX31_RS08205at 135.620 kb on + strand, within EX31_RS08205at 135.620 kb on + strand, within EX31_RS08205at 135.621 kb on - strand, within EX31_RS08205at 135.621 kb on - strand, within EX31_RS08205at 135.621 kb on - strand, within EX31_RS08205at 135.621 kb on - strand, within EX31_RS08205at 135.621 kb on - strand, within EX31_RS08205at 135.621 kb on - strand, within EX31_RS08205at 135.621 kb on - strand, within EX31_RS08205at 135.621 kb on - strand, within EX31_RS08205at 135.621 kb on - strand, within EX31_RS08205at 135.621 kb on - strand, within EX31_RS08205at 135.621 kb on - strand, within EX31_RS08205at 135.621 kb on - strand, within EX31_RS08205at 135.621 kb on - strand, within EX31_RS08205at 135.621 kb on - strand, within EX31_RS08205at 135.621 kb on - strand, within EX31_RS08205at 135.621 kb on - strand, within EX31_RS08205at 135.621 kb on - strand, within EX31_RS08205at 135.621 kb on - strand, within EX31_RS08205at 135.628 kb on - strand, within EX31_RS08205at 135.628 kb on - strand, within EX31_RS08205at 135.628 kb on - strand, within EX31_RS08205at 135.681 kb on - strand, within EX31_RS08205at 135.699 kb on + strand, within EX31_RS08205at 135.700 kb on - strand, within EX31_RS08205at 135.700 kb on - strand, within EX31_RS08205at 135.700 kb on - strand, within EX31_RS08205at 135.789 kb on - strand, within EX31_RS08205at 135.958 kb on - strandat 135.969 kb on - strandat 136.157 kb on + strand, within EX31_RS08210at 136.232 kb on - strand, within EX31_RS08210at 136.268 kb on - strand, within EX31_RS08210at 136.294 kb on + strand, within EX31_RS08210at 136.295 kb on - strand, within EX31_RS08210at 136.323 kb on - strand, within EX31_RS08210at 136.323 kb on - strand, within EX31_RS08210at 136.323 kb on - strand, within EX31_RS08210at 136.520 kb on + strandat 136.521 kb on - strandat 136.526 kb on + strandat 136.560 kb on + strandat 136.601 kb on + strandat 136.602 kb on - strandat 136.642 kb on + strandat 136.648 kb on - strandat 136.651 kb on + strandat 136.652 kb on - strandat 136.661 kb on + strandat 136.661 kb on + strandat 136.662 kb on - strandat 136.685 kb on + strandat 136.686 kb on - strandat 136.686 kb on - strandat 136.697 kb on - strandat 136.739 kb on + strandat 136.740 kb on - strandat 136.750 kb on + strandat 136.751 kb on - strandat 136.787 kb on + strandat 136.788 kb on - strandat 136.820 kb on + strandat 136.826 kb on + strandat 136.832 kb on + strandat 136.833 kb on - strandat 136.850 kb on + strandat 136.951 kb on + strand, within EX31_RS08215at 136.951 kb on + strand, within EX31_RS08215at 136.952 kb on - strand, within EX31_RS08215

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); RCH2 media; no shaking
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134,850 - +0.2
134,887 - -0.7
134,936 - EX31_RS08200 0.18 +1.3
134,936 - EX31_RS08200 0.18 +1.0
135,050 + EX31_RS08200 0.43 +0.3
135,080 - EX31_RS08200 0.49 +0.7
135,105 - EX31_RS08200 0.54 +0.6
135,145 - EX31_RS08200 0.63 +0.2
135,171 + EX31_RS08200 0.68 +1.7
135,172 - EX31_RS08200 0.69 +0.1
135,322 - -0.1
135,336 - -0.4
135,401 + -0.1
135,401 + +1.4
135,401 + -0.7
135,402 - -1.3
135,406 - +0.1
135,406 - +2.4
135,471 + EX31_RS08205 0.20 +1.4
135,473 + EX31_RS08205 0.20 -0.7
135,474 - EX31_RS08205 0.20 +1.1
135,474 - EX31_RS08205 0.20 +0.4
135,474 - EX31_RS08205 0.20 -1.6
135,495 - EX31_RS08205 0.24 +0.9
135,567 + EX31_RS08205 0.36 +0.6
135,567 + EX31_RS08205 0.36 +1.2
135,568 - EX31_RS08205 0.36 -0.1
135,599 - EX31_RS08205 0.41 +2.0
135,620 + EX31_RS08205 0.44 -0.8
135,620 + EX31_RS08205 0.44 +1.0
135,620 + EX31_RS08205 0.44 +1.5
135,620 + EX31_RS08205 0.44 +2.2
135,620 + EX31_RS08205 0.44 +0.1
135,620 + EX31_RS08205 0.44 -0.6
135,620 + EX31_RS08205 0.44 +1.6
135,621 - EX31_RS08205 0.45 -0.9
135,621 - EX31_RS08205 0.45 -0.1
135,621 - EX31_RS08205 0.45 +0.1
135,621 - EX31_RS08205 0.45 -0.6
135,621 - EX31_RS08205 0.45 -0.4
135,621 - EX31_RS08205 0.45 +0.1
135,621 - EX31_RS08205 0.45 -0.7
135,621 - EX31_RS08205 0.45 +0.9
135,621 - EX31_RS08205 0.45 +0.6
135,621 - EX31_RS08205 0.45 -0.0
135,621 - EX31_RS08205 0.45 +0.6
135,621 - EX31_RS08205 0.45 -0.9
135,621 - EX31_RS08205 0.45 +0.9
135,621 - EX31_RS08205 0.45 +0.3
135,621 - EX31_RS08205 0.45 -0.3
135,621 - EX31_RS08205 0.45 -0.6
135,621 - EX31_RS08205 0.45 +1.0
135,621 - EX31_RS08205 0.45 +0.8
135,628 - EX31_RS08205 0.46 -2.1
135,628 - EX31_RS08205 0.46 +0.4
135,628 - EX31_RS08205 0.46 +1.8
135,681 - EX31_RS08205 0.55 +0.0
135,699 + EX31_RS08205 0.58 -0.6
135,700 - EX31_RS08205 0.58 -0.7
135,700 - EX31_RS08205 0.58 -0.2
135,700 - EX31_RS08205 0.58 -1.1
135,789 - EX31_RS08205 0.72 +0.5
135,958 - +1.0
135,969 - +0.4
136,157 + EX31_RS08210 0.25 +0.4
136,232 - EX31_RS08210 0.40 -0.7
136,268 - EX31_RS08210 0.47 -1.2
136,294 + EX31_RS08210 0.53 +0.1
136,295 - EX31_RS08210 0.53 +0.3
136,323 - EX31_RS08210 0.59 -0.7
136,323 - EX31_RS08210 0.59 -0.3
136,323 - EX31_RS08210 0.59 +0.3
136,520 + +0.0
136,521 - +2.4
136,526 + +0.9
136,560 + -0.5
136,601 + -0.1
136,602 - +0.5
136,642 + -1.5
136,648 - -2.6
136,651 + -0.9
136,652 - -0.5
136,661 + -1.5
136,661 + +0.9
136,662 - +0.2
136,685 + +0.2
136,686 - -0.0
136,686 - +0.4
136,697 - -0.2
136,739 + -0.2
136,740 - -2.3
136,750 + +1.0
136,751 - +0.5
136,787 + +1.1
136,788 - -0.4
136,820 + -0.3
136,826 + +1.5
136,832 + -0.4
136,833 - -0.3
136,850 + +0.5
136,951 + EX31_RS08215 0.29 -1.3
136,951 + EX31_RS08215 0.29 +2.1
136,952 - EX31_RS08215 0.29 +1.5

Or see this region's nucleotide sequence