Experiment: Ammonium chloride (N); RCH2 media; no shaking
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS07635 and EX31_RS07640 are separated by 0 nucleotides EX31_RS07640 and EX31_RS07645 are separated by 92 nucleotides EX31_RS07645 and EX31_RS07650 are separated by 81 nucleotides EX31_RS07650 and EX31_RS07655 overlap by 4 nucleotides
EX31_RS07635: EX31_RS07635 - lysozyme, at 14,315 to 14,824
_RS07635
EX31_RS07640: EX31_RS07640 - lysis regulatory protein, at 14,825 to 15,253
_RS07640
EX31_RS07645: EX31_RS07645 - phage tail protein, at 15,346 to 15,807
_RS07645
EX31_RS07650: EX31_RS07650 - phage baseplate assembly protein V, at 15,889 to 16,530
_RS07650
EX31_RS07655: EX31_RS07655 - baseplate assembly protein, at 16,527 to 16,877
_RS07655
Position (kb) 15
16 Strain fitness (log2 ratio) -2
-1
0
1 at 14.367 kb on + strand, within EX31_RS07635 at 14.367 kb on + strand, within EX31_RS07635 at 14.456 kb on + strand, within EX31_RS07635 at 14.476 kb on - strand, within EX31_RS07635 at 14.597 kb on - strand, within EX31_RS07635 at 14.674 kb on + strand, within EX31_RS07635 at 14.674 kb on + strand, within EX31_RS07635 at 14.800 kb on + strand at 14.800 kb on + strand at 14.800 kb on + strand at 14.800 kb on + strand at 14.801 kb on - strand at 14.801 kb on - strand at 14.801 kb on - strand at 14.801 kb on - strand at 14.801 kb on - strand at 14.863 kb on - strand at 14.898 kb on + strand, within EX31_RS07640 at 14.899 kb on - strand, within EX31_RS07640 at 14.899 kb on - strand, within EX31_RS07640 at 14.945 kb on - strand, within EX31_RS07640 at 14.952 kb on + strand, within EX31_RS07640 at 14.952 kb on + strand, within EX31_RS07640 at 14.952 kb on + strand, within EX31_RS07640 at 14.952 kb on + strand, within EX31_RS07640 at 14.952 kb on + strand, within EX31_RS07640 at 14.952 kb on + strand, within EX31_RS07640 at 14.952 kb on + strand, within EX31_RS07640 at 14.953 kb on - strand, within EX31_RS07640 at 14.953 kb on - strand, within EX31_RS07640 at 14.953 kb on - strand, within EX31_RS07640 at 14.953 kb on - strand, within EX31_RS07640 at 14.953 kb on - strand, within EX31_RS07640 at 14.953 kb on - strand, within EX31_RS07640 at 15.188 kb on + strand, within EX31_RS07640 at 15.192 kb on + strand, within EX31_RS07640 at 15.192 kb on + strand, within EX31_RS07640 at 15.192 kb on + strand, within EX31_RS07640 at 15.192 kb on + strand, within EX31_RS07640 at 15.192 kb on + strand, within EX31_RS07640 at 15.193 kb on - strand, within EX31_RS07640 at 15.193 kb on - strand, within EX31_RS07640 at 15.308 kb on - strand at 15.399 kb on + strand, within EX31_RS07645 at 15.399 kb on + strand, within EX31_RS07645 at 15.481 kb on + strand, within EX31_RS07645 at 15.615 kb on - strand, within EX31_RS07645 at 15.624 kb on + strand, within EX31_RS07645 at 15.625 kb on - strand, within EX31_RS07645 at 15.625 kb on - strand, within EX31_RS07645 at 15.686 kb on + strand, within EX31_RS07645 at 15.686 kb on + strand, within EX31_RS07645 at 15.686 kb on + strand, within EX31_RS07645 at 15.686 kb on + strand, within EX31_RS07645 at 15.686 kb on + strand, within EX31_RS07645 at 15.687 kb on - strand, within EX31_RS07645 at 15.770 kb on - strand at 15.770 kb on - strand at 15.805 kb on + strand at 15.806 kb on - strand at 15.894 kb on + strand at 15.894 kb on + strand at 15.917 kb on + strand at 15.917 kb on + strand at 15.917 kb on + strand at 15.917 kb on + strand at 15.917 kb on + strand at 15.917 kb on + strand at 15.918 kb on - strand at 15.918 kb on - strand at 15.918 kb on - strand at 16.050 kb on + strand, within EX31_RS07650 at 16.051 kb on - strand, within EX31_RS07650 at 16.116 kb on + strand, within EX31_RS07650 at 16.116 kb on + strand, within EX31_RS07650 at 16.116 kb on + strand, within EX31_RS07650 at 16.116 kb on + strand, within EX31_RS07650 at 16.116 kb on + strand, within EX31_RS07650 at 16.116 kb on + strand, within EX31_RS07650 at 16.117 kb on - strand, within EX31_RS07650 at 16.117 kb on - strand, within EX31_RS07650 at 16.119 kb on + strand, within EX31_RS07650 at 16.120 kb on - strand, within EX31_RS07650 at 16.142 kb on + strand, within EX31_RS07650 at 16.143 kb on - strand, within EX31_RS07650 at 16.143 kb on - strand, within EX31_RS07650 at 16.260 kb on + strand, within EX31_RS07650 at 16.260 kb on + strand, within EX31_RS07650 at 16.358 kb on + strand, within EX31_RS07650 at 16.358 kb on + strand, within EX31_RS07650 at 16.359 kb on - strand, within EX31_RS07650 at 16.359 kb on - strand, within EX31_RS07650 at 16.359 kb on - strand, within EX31_RS07650 at 16.427 kb on + strand, within EX31_RS07650 at 16.427 kb on + strand, within EX31_RS07650 at 16.428 kb on - strand, within EX31_RS07650 at 16.542 kb on + strand at 16.543 kb on - strand at 16.623 kb on - strand, within EX31_RS07655 at 16.656 kb on + strand, within EX31_RS07655 at 16.656 kb on + strand, within EX31_RS07655 at 16.657 kb on - strand, within EX31_RS07655 at 16.657 kb on - strand, within EX31_RS07655 at 16.705 kb on + strand, within EX31_RS07655 at 16.705 kb on + strand, within EX31_RS07655 at 16.705 kb on + strand, within EX31_RS07655 at 16.705 kb on + strand, within EX31_RS07655 at 16.705 kb on + strand, within EX31_RS07655 at 16.706 kb on - strand, within EX31_RS07655 at 16.731 kb on + strand, within EX31_RS07655 at 16.795 kb on - strand, within EX31_RS07655
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N); RCH2 media; no shaking remove 14,367 + EX31_RS07635 0.10 +0.6 14,367 + EX31_RS07635 0.10 -0.9 14,456 + EX31_RS07635 0.28 +0.2 14,476 - EX31_RS07635 0.32 +0.3 14,597 - EX31_RS07635 0.55 -0.7 14,674 + EX31_RS07635 0.70 -0.1 14,674 + EX31_RS07635 0.70 -0.3 14,800 + -0.3 14,800 + +0.1 14,800 + +0.1 14,800 + +0.4 14,801 - -0.6 14,801 - +0.7 14,801 - +0.6 14,801 - -0.3 14,801 - +1.0 14,863 - +0.6 14,898 + EX31_RS07640 0.17 +0.4 14,899 - EX31_RS07640 0.17 +0.1 14,899 - EX31_RS07640 0.17 +0.7 14,945 - EX31_RS07640 0.28 +0.1 14,952 + EX31_RS07640 0.30 -0.0 14,952 + EX31_RS07640 0.30 +0.2 14,952 + EX31_RS07640 0.30 +0.3 14,952 + EX31_RS07640 0.30 +0.5 14,952 + EX31_RS07640 0.30 -0.1 14,952 + EX31_RS07640 0.30 -0.3 14,952 + EX31_RS07640 0.30 +1.4 14,953 - EX31_RS07640 0.30 +1.7 14,953 - EX31_RS07640 0.30 +0.7 14,953 - EX31_RS07640 0.30 -1.2 14,953 - EX31_RS07640 0.30 +0.3 14,953 - EX31_RS07640 0.30 +0.1 14,953 - EX31_RS07640 0.30 +0.7 15,188 + EX31_RS07640 0.85 +0.2 15,192 + EX31_RS07640 0.86 +1.0 15,192 + EX31_RS07640 0.86 -0.5 15,192 + EX31_RS07640 0.86 +0.2 15,192 + EX31_RS07640 0.86 +0.6 15,192 + EX31_RS07640 0.86 -1.2 15,193 - EX31_RS07640 0.86 +0.4 15,193 - EX31_RS07640 0.86 -0.2 15,308 - +0.5 15,399 + EX31_RS07645 0.11 -0.3 15,399 + EX31_RS07645 0.11 +1.1 15,481 + EX31_RS07645 0.29 +1.3 15,615 - EX31_RS07645 0.58 -0.8 15,624 + EX31_RS07645 0.60 +1.6 15,625 - EX31_RS07645 0.60 +1.3 15,625 - EX31_RS07645 0.60 +0.1 15,686 + EX31_RS07645 0.74 +0.9 15,686 + EX31_RS07645 0.74 +0.1 15,686 + EX31_RS07645 0.74 +0.2 15,686 + EX31_RS07645 0.74 +1.1 15,686 + EX31_RS07645 0.74 -0.8 15,687 - EX31_RS07645 0.74 -0.5 15,770 - +0.6 15,770 - +0.9 15,805 + -1.3 15,806 - +0.4 15,894 + +0.1 15,894 + +0.9 15,917 + -0.4 15,917 + +0.5 15,917 + +0.6 15,917 + +0.4 15,917 + +0.8 15,917 + +0.4 15,918 - -0.1 15,918 - -0.3 15,918 - +0.5 16,050 + EX31_RS07650 0.25 -0.2 16,051 - EX31_RS07650 0.25 +0.6 16,116 + EX31_RS07650 0.35 -0.4 16,116 + EX31_RS07650 0.35 +0.5 16,116 + EX31_RS07650 0.35 -0.8 16,116 + EX31_RS07650 0.35 +0.5 16,116 + EX31_RS07650 0.35 +0.7 16,116 + EX31_RS07650 0.35 -1.1 16,117 - EX31_RS07650 0.36 -2.3 16,117 - EX31_RS07650 0.36 -0.8 16,119 + EX31_RS07650 0.36 -0.0 16,120 - EX31_RS07650 0.36 -1.5 16,142 + EX31_RS07650 0.39 -1.7 16,143 - EX31_RS07650 0.40 -0.3 16,143 - EX31_RS07650 0.40 +0.0 16,260 + EX31_RS07650 0.58 -0.8 16,260 + EX31_RS07650 0.58 -1.3 16,358 + EX31_RS07650 0.73 -0.4 16,358 + EX31_RS07650 0.73 -0.2 16,359 - EX31_RS07650 0.73 +0.1 16,359 - EX31_RS07650 0.73 -0.2 16,359 - EX31_RS07650 0.73 +1.4 16,427 + EX31_RS07650 0.84 -0.2 16,427 + EX31_RS07650 0.84 -2.3 16,428 - EX31_RS07650 0.84 -0.5 16,542 + -0.6 16,543 - +0.1 16,623 - EX31_RS07655 0.27 -0.1 16,656 + EX31_RS07655 0.37 -0.8 16,656 + EX31_RS07655 0.37 +0.5 16,657 - EX31_RS07655 0.37 +1.0 16,657 - EX31_RS07655 0.37 +1.3 16,705 + EX31_RS07655 0.51 +0.8 16,705 + EX31_RS07655 0.51 +0.6 16,705 + EX31_RS07655 0.51 +1.0 16,705 + EX31_RS07655 0.51 -0.3 16,705 + EX31_RS07655 0.51 -0.4 16,706 - EX31_RS07655 0.51 -0.3 16,731 + EX31_RS07655 0.58 +0.5 16,795 - EX31_RS07655 0.76 -1.1
Or see this region's nucleotide sequence