Experiment: Ammonium chloride (N); RCH2 media; no shaking
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS07340 and EX31_RS07345 are separated by 307 nucleotides EX31_RS07345 and EX31_RS07350 are separated by 91 nucleotides EX31_RS07350 and EX31_RS07355 are separated by 12 nucleotides
EX31_RS07340: EX31_RS07340 - stress-induced protein YchH, at 271,099 to 271,377
_RS07340
EX31_RS07345: EX31_RS07345 - aminoacyl-tRNA hydrolase, at 271,685 to 272,260
_RS07345
EX31_RS07350: EX31_RS07350 - cadmium-translocating P-type ATPase, at 272,352 to 274,256
_RS07350
EX31_RS07355: EX31_RS07355 - protease modulator HflK, at 274,269 to 275,312
_RS07355
Position (kb) 272
273
274
275 Strain fitness (log2 ratio) -1
0
1
2 at 271.378 kb on - strand at 271.378 kb on - strand at 271.404 kb on + strand at 271.405 kb on - strand at 271.438 kb on - strand at 271.556 kb on - strand at 271.601 kb on + strand at 271.601 kb on + strand at 271.601 kb on + strand at 271.628 kb on - strand at 271.632 kb on + strand at 272.333 kb on + strand at 272.333 kb on + strand at 272.333 kb on + strand at 272.339 kb on + strand at 272.349 kb on + strand at 272.350 kb on - strand at 272.681 kb on + strand, within EX31_RS07350 at 272.802 kb on - strand, within EX31_RS07350 at 272.802 kb on - strand, within EX31_RS07350 at 272.994 kb on - strand, within EX31_RS07350 at 273.100 kb on + strand, within EX31_RS07350 at 273.100 kb on + strand, within EX31_RS07350 at 273.100 kb on + strand, within EX31_RS07350 at 273.101 kb on - strand, within EX31_RS07350 at 273.101 kb on - strand, within EX31_RS07350 at 273.101 kb on - strand, within EX31_RS07350 at 273.101 kb on - strand, within EX31_RS07350 at 273.122 kb on + strand, within EX31_RS07350 at 273.273 kb on - strand, within EX31_RS07350 at 273.471 kb on - strand, within EX31_RS07350 at 273.471 kb on - strand, within EX31_RS07350 at 273.482 kb on - strand, within EX31_RS07350 at 273.493 kb on + strand, within EX31_RS07350 at 273.569 kb on + strand, within EX31_RS07350 at 273.570 kb on - strand, within EX31_RS07350 at 273.570 kb on - strand, within EX31_RS07350 at 273.714 kb on + strand, within EX31_RS07350 at 274.029 kb on - strand, within EX31_RS07350 at 274.030 kb on + strand, within EX31_RS07350 at 274.031 kb on - strand, within EX31_RS07350 at 274.244 kb on + strand at 274.265 kb on + strand at 274.266 kb on - strand at 274.399 kb on - strand, within EX31_RS07355 at 274.495 kb on - strand, within EX31_RS07355 at 274.719 kb on + strand, within EX31_RS07355 at 274.720 kb on - strand, within EX31_RS07355 at 274.912 kb on + strand, within EX31_RS07355 at 274.913 kb on - strand, within EX31_RS07355 at 274.913 kb on - strand, within EX31_RS07355 at 274.915 kb on + strand, within EX31_RS07355 at 274.916 kb on - strand, within EX31_RS07355 at 274.916 kb on - strand, within EX31_RS07355 at 275.089 kb on - strand, within EX31_RS07355
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N); RCH2 media; no shaking remove 271,378 - +0.1 271,378 - -0.9 271,404 + +0.3 271,405 - -0.4 271,438 - +1.8 271,556 - +0.9 271,601 + +1.9 271,601 + +1.3 271,601 + +0.2 271,628 - +2.5 271,632 + +0.3 272,333 + +1.8 272,333 + -0.3 272,333 + -0.3 272,339 + +0.7 272,349 + -0.4 272,350 - -0.8 272,681 + EX31_RS07350 0.17 +0.2 272,802 - EX31_RS07350 0.24 +1.1 272,802 - EX31_RS07350 0.24 -0.6 272,994 - EX31_RS07350 0.34 +1.1 273,100 + EX31_RS07350 0.39 +0.6 273,100 + EX31_RS07350 0.39 +0.3 273,100 + EX31_RS07350 0.39 +0.2 273,101 - EX31_RS07350 0.39 +0.6 273,101 - EX31_RS07350 0.39 +0.6 273,101 - EX31_RS07350 0.39 +1.1 273,101 - EX31_RS07350 0.39 +0.6 273,122 + EX31_RS07350 0.40 +0.6 273,273 - EX31_RS07350 0.48 +0.7 273,471 - EX31_RS07350 0.59 +1.9 273,471 - EX31_RS07350 0.59 +0.0 273,482 - EX31_RS07350 0.59 +1.3 273,493 + EX31_RS07350 0.60 +0.3 273,569 + EX31_RS07350 0.64 +0.9 273,570 - EX31_RS07350 0.64 +0.2 273,570 - EX31_RS07350 0.64 +0.9 273,714 + EX31_RS07350 0.71 -0.1 274,029 - EX31_RS07350 0.88 +1.3 274,030 + EX31_RS07350 0.88 -1.1 274,031 - EX31_RS07350 0.88 +1.9 274,244 + +1.3 274,265 + -0.7 274,266 - -0.1 274,399 - EX31_RS07355 0.12 +0.3 274,495 - EX31_RS07355 0.22 +1.5 274,719 + EX31_RS07355 0.43 -1.5 274,720 - EX31_RS07355 0.43 +0.2 274,912 + EX31_RS07355 0.62 +1.9 274,913 - EX31_RS07355 0.62 +0.1 274,913 - EX31_RS07355 0.62 -0.7 274,915 + EX31_RS07355 0.62 +0.7 274,916 - EX31_RS07355 0.62 +0.1 274,916 - EX31_RS07355 0.62 +0.5 275,089 - EX31_RS07355 0.79 +0.6
Or see this region's nucleotide sequence