Strain Fitness in Rahnella sp. WP5 around EX31_RS06870

Experiment: Ammonium chloride (N); RCH2 media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS06865 and EX31_RS06870 are separated by 59 nucleotidesEX31_RS06870 and EX31_RS06875 are separated by 254 nucleotides EX31_RS06865: EX31_RS06865 - pyridoxal phosphate-dependent aminotransferase, at 161,237 to 162,412 _RS06865 EX31_RS06870: EX31_RS06870 - PTS maltose transporter subunit IICB, at 162,472 to 164,085 _RS06870 EX31_RS06875: EX31_RS06875 - Mal regulon transcriptional regulator MalI, at 164,340 to 165,371 _RS06875 Position (kb) 162 163 164 165Strain fitness (log2 ratio) -2 -1 0 1 2 3at 161.508 kb on + strand, within EX31_RS06865at 161.525 kb on + strand, within EX31_RS06865at 161.525 kb on + strand, within EX31_RS06865at 161.792 kb on - strand, within EX31_RS06865at 162.048 kb on + strand, within EX31_RS06865at 162.058 kb on + strand, within EX31_RS06865at 162.117 kb on + strand, within EX31_RS06865at 162.118 kb on - strand, within EX31_RS06865at 162.118 kb on - strand, within EX31_RS06865at 162.135 kb on + strand, within EX31_RS06865at 162.311 kb on - strandat 162.311 kb on - strandat 162.321 kb on - strandat 162.464 kb on - strandat 162.469 kb on + strandat 162.470 kb on - strandat 162.474 kb on - strandat 162.474 kb on - strandat 162.525 kb on - strandat 162.588 kb on + strandat 162.648 kb on + strand, within EX31_RS06870at 162.648 kb on + strand, within EX31_RS06870at 162.648 kb on + strand, within EX31_RS06870at 162.648 kb on + strand, within EX31_RS06870at 162.648 kb on + strand, within EX31_RS06870at 162.648 kb on + strand, within EX31_RS06870at 162.743 kb on + strand, within EX31_RS06870at 162.814 kb on - strand, within EX31_RS06870at 162.819 kb on + strand, within EX31_RS06870at 162.846 kb on + strand, within EX31_RS06870at 162.854 kb on + strand, within EX31_RS06870at 162.854 kb on + strand, within EX31_RS06870at 162.855 kb on - strand, within EX31_RS06870at 162.855 kb on - strand, within EX31_RS06870at 162.958 kb on - strand, within EX31_RS06870at 162.971 kb on - strand, within EX31_RS06870at 163.029 kb on - strand, within EX31_RS06870at 163.157 kb on + strand, within EX31_RS06870at 163.381 kb on + strand, within EX31_RS06870at 163.630 kb on + strand, within EX31_RS06870at 163.631 kb on - strand, within EX31_RS06870at 163.686 kb on + strand, within EX31_RS06870at 163.687 kb on - strand, within EX31_RS06870at 164.106 kb on + strandat 164.240 kb on + strandat 164.241 kb on - strandat 164.264 kb on - strandat 164.283 kb on + strandat 164.507 kb on + strand, within EX31_RS06875at 164.545 kb on + strand, within EX31_RS06875at 164.555 kb on + strand, within EX31_RS06875at 164.557 kb on + strand, within EX31_RS06875at 164.571 kb on + strand, within EX31_RS06875at 164.626 kb on + strand, within EX31_RS06875at 164.626 kb on + strand, within EX31_RS06875at 164.678 kb on + strand, within EX31_RS06875at 164.729 kb on + strand, within EX31_RS06875at 164.834 kb on + strand, within EX31_RS06875at 164.834 kb on + strand, within EX31_RS06875at 164.834 kb on + strand, within EX31_RS06875at 164.834 kb on + strand, within EX31_RS06875at 164.862 kb on + strand, within EX31_RS06875at 165.046 kb on + strand, within EX31_RS06875

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); RCH2 media; no shaking
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161,508 + EX31_RS06865 0.23 -0.4
161,525 + EX31_RS06865 0.24 +0.4
161,525 + EX31_RS06865 0.24 -0.9
161,792 - EX31_RS06865 0.47 +0.5
162,048 + EX31_RS06865 0.69 +0.8
162,058 + EX31_RS06865 0.70 +0.5
162,117 + EX31_RS06865 0.75 +0.4
162,118 - EX31_RS06865 0.75 +0.8
162,118 - EX31_RS06865 0.75 +1.9
162,135 + EX31_RS06865 0.76 +0.9
162,311 - +0.8
162,311 - +0.7
162,321 - +1.5
162,464 - +0.8
162,469 + -0.7
162,470 - -0.3
162,474 - -1.3
162,474 - -1.6
162,525 - +0.6
162,588 + -2.3
162,648 + EX31_RS06870 0.11 -0.7
162,648 + EX31_RS06870 0.11 -1.1
162,648 + EX31_RS06870 0.11 +0.4
162,648 + EX31_RS06870 0.11 +0.2
162,648 + EX31_RS06870 0.11 +0.6
162,648 + EX31_RS06870 0.11 +0.4
162,743 + EX31_RS06870 0.17 +1.4
162,814 - EX31_RS06870 0.21 +1.3
162,819 + EX31_RS06870 0.21 -0.7
162,846 + EX31_RS06870 0.23 +1.6
162,854 + EX31_RS06870 0.24 +2.9
162,854 + EX31_RS06870 0.24 +1.9
162,855 - EX31_RS06870 0.24 +0.2
162,855 - EX31_RS06870 0.24 +0.8
162,958 - EX31_RS06870 0.30 +0.0
162,971 - EX31_RS06870 0.31 +0.3
163,029 - EX31_RS06870 0.35 -0.5
163,157 + EX31_RS06870 0.42 +1.9
163,381 + EX31_RS06870 0.56 +3.5
163,630 + EX31_RS06870 0.72 -0.4
163,631 - EX31_RS06870 0.72 +1.2
163,686 + EX31_RS06870 0.75 +0.6
163,687 - EX31_RS06870 0.75 +0.3
164,106 + -1.8
164,240 + -0.3
164,241 - -0.4
164,264 - +0.7
164,283 + -1.2
164,507 + EX31_RS06875 0.16 +0.5
164,545 + EX31_RS06875 0.20 -1.3
164,555 + EX31_RS06875 0.21 +0.3
164,557 + EX31_RS06875 0.21 -0.7
164,571 + EX31_RS06875 0.22 +2.5
164,626 + EX31_RS06875 0.28 +0.2
164,626 + EX31_RS06875 0.28 +0.3
164,678 + EX31_RS06875 0.33 -0.3
164,729 + EX31_RS06875 0.38 -0.0
164,834 + EX31_RS06875 0.48 -0.6
164,834 + EX31_RS06875 0.48 -0.7
164,834 + EX31_RS06875 0.48 +0.1
164,834 + EX31_RS06875 0.48 +0.9
164,862 + EX31_RS06875 0.51 -1.1
165,046 + EX31_RS06875 0.68 +0.2

Or see this region's nucleotide sequence