Strain Fitness in Rahnella sp. WP5 around EX31_RS02260

Experiment: Ammonium chloride (N); RCH2 media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS02255 and EX31_RS02260 are separated by 58 nucleotidesEX31_RS02260 and EX31_RS02265 are separated by 46 nucleotides EX31_RS02255: EX31_RS02255 - oxidoreductase, at 487,802 to 488,692 _RS02255 EX31_RS02260: EX31_RS02260 - chitin disaccharide deacetylase, at 488,751 to 489,509 _RS02260 EX31_RS02265: EX31_RS02265 - 6-phospho-beta-glucosidase, at 489,556 to 490,899 _RS02265 Position (kb) 488 489 490Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 487.751 kb on - strandat 487.774 kb on + strandat 487.774 kb on + strandat 487.774 kb on + strandat 487.774 kb on + strandat 487.775 kb on - strandat 487.819 kb on + strandat 487.830 kb on + strandat 487.830 kb on + strandat 487.830 kb on + strandat 487.831 kb on - strandat 487.831 kb on - strandat 487.971 kb on + strand, within EX31_RS02255at 488.081 kb on - strand, within EX31_RS02255at 488.135 kb on + strand, within EX31_RS02255at 488.429 kb on + strand, within EX31_RS02255at 488.429 kb on + strand, within EX31_RS02255at 488.430 kb on - strand, within EX31_RS02255at 488.430 kb on - strand, within EX31_RS02255at 488.542 kb on + strand, within EX31_RS02255at 488.542 kb on + strand, within EX31_RS02255at 488.543 kb on - strand, within EX31_RS02255at 488.586 kb on + strand, within EX31_RS02255at 488.586 kb on + strand, within EX31_RS02255at 488.586 kb on + strand, within EX31_RS02255at 488.586 kb on + strand, within EX31_RS02255at 488.586 kb on + strand, within EX31_RS02255at 488.586 kb on + strand, within EX31_RS02255at 488.586 kb on + strand, within EX31_RS02255at 488.586 kb on + strand, within EX31_RS02255at 488.586 kb on + strand, within EX31_RS02255at 488.586 kb on + strand, within EX31_RS02255at 488.586 kb on + strand, within EX31_RS02255at 488.587 kb on - strand, within EX31_RS02255at 488.587 kb on - strand, within EX31_RS02255at 488.587 kb on - strand, within EX31_RS02255at 488.587 kb on - strand, within EX31_RS02255at 488.587 kb on - strand, within EX31_RS02255at 488.587 kb on - strand, within EX31_RS02255at 488.587 kb on - strand, within EX31_RS02255at 488.601 kb on + strand, within EX31_RS02255at 488.633 kb on - strandat 488.633 kb on - strandat 488.739 kb on - strandat 488.742 kb on + strandat 488.742 kb on + strandat 488.743 kb on - strandat 488.743 kb on - strandat 488.743 kb on - strandat 488.745 kb on + strandat 488.753 kb on - strandat 488.754 kb on + strandat 488.754 kb on + strandat 488.755 kb on - strandat 488.823 kb on + strandat 488.823 kb on + strandat 488.824 kb on - strandat 488.824 kb on - strandat 488.824 kb on - strandat 488.854 kb on + strand, within EX31_RS02260at 488.854 kb on + strand, within EX31_RS02260at 488.855 kb on - strand, within EX31_RS02260at 488.876 kb on + strand, within EX31_RS02260at 489.064 kb on - strand, within EX31_RS02260at 489.122 kb on + strand, within EX31_RS02260at 489.122 kb on + strand, within EX31_RS02260at 489.122 kb on + strand, within EX31_RS02260at 489.122 kb on + strand, within EX31_RS02260at 489.122 kb on + strand, within EX31_RS02260at 489.122 kb on + strand, within EX31_RS02260at 489.122 kb on + strand, within EX31_RS02260at 489.122 kb on + strand, within EX31_RS02260at 489.123 kb on - strand, within EX31_RS02260at 489.123 kb on - strand, within EX31_RS02260at 489.123 kb on - strand, within EX31_RS02260at 489.123 kb on - strand, within EX31_RS02260at 489.123 kb on - strand, within EX31_RS02260at 489.123 kb on - strand, within EX31_RS02260at 489.123 kb on - strand, within EX31_RS02260at 489.123 kb on - strand, within EX31_RS02260at 489.123 kb on - strand, within EX31_RS02260at 489.123 kb on - strand, within EX31_RS02260at 489.123 kb on - strand, within EX31_RS02260at 489.123 kb on - strand, within EX31_RS02260at 489.493 kb on - strandat 489.498 kb on + strandat 489.499 kb on - strandat 489.503 kb on + strandat 489.504 kb on - strandat 489.509 kb on + strandat 489.510 kb on - strandat 489.631 kb on + strandat 489.749 kb on + strand, within EX31_RS02265at 489.749 kb on + strand, within EX31_RS02265at 489.749 kb on + strand, within EX31_RS02265at 489.749 kb on + strand, within EX31_RS02265at 489.749 kb on + strand, within EX31_RS02265at 489.749 kb on + strand, within EX31_RS02265at 489.750 kb on - strand, within EX31_RS02265at 489.750 kb on - strand, within EX31_RS02265at 489.750 kb on - strand, within EX31_RS02265at 489.750 kb on - strand, within EX31_RS02265at 489.750 kb on - strand, within EX31_RS02265at 489.750 kb on - strand, within EX31_RS02265at 489.750 kb on - strand, within EX31_RS02265at 489.750 kb on - strand, within EX31_RS02265at 489.750 kb on - strand, within EX31_RS02265at 489.752 kb on - strand, within EX31_RS02265at 489.859 kb on - strand, within EX31_RS02265at 489.859 kb on - strand, within EX31_RS02265at 489.865 kb on - strand, within EX31_RS02265at 489.874 kb on - strand, within EX31_RS02265at 489.915 kb on - strand, within EX31_RS02265at 489.915 kb on - strand, within EX31_RS02265at 489.950 kb on + strand, within EX31_RS02265at 489.954 kb on - strand, within EX31_RS02265at 489.954 kb on - strand, within EX31_RS02265at 490.043 kb on - strand, within EX31_RS02265at 490.071 kb on - strand, within EX31_RS02265at 490.110 kb on + strand, within EX31_RS02265at 490.115 kb on + strand, within EX31_RS02265at 490.115 kb on + strand, within EX31_RS02265at 490.118 kb on + strand, within EX31_RS02265at 490.127 kb on + strand, within EX31_RS02265at 490.178 kb on - strand, within EX31_RS02265at 490.178 kb on - strand, within EX31_RS02265at 490.278 kb on + strand, within EX31_RS02265at 490.279 kb on - strand, within EX31_RS02265at 490.461 kb on + strand, within EX31_RS02265at 490.462 kb on - strand, within EX31_RS02265

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); RCH2 media; no shaking
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487,751 - +0.1
487,774 + -0.4
487,774 + +0.1
487,774 + -0.3
487,774 + +0.5
487,775 - +1.2
487,819 + -0.1
487,830 + -0.9
487,830 + -1.3
487,830 + -0.7
487,831 - -0.9
487,831 - -1.9
487,971 + EX31_RS02255 0.19 +2.1
488,081 - EX31_RS02255 0.31 -0.2
488,135 + EX31_RS02255 0.37 -0.5
488,429 + EX31_RS02255 0.70 -0.2
488,429 + EX31_RS02255 0.70 -0.5
488,430 - EX31_RS02255 0.70 -0.1
488,430 - EX31_RS02255 0.70 -1.3
488,542 + EX31_RS02255 0.83 -0.0
488,542 + EX31_RS02255 0.83 +1.8
488,543 - EX31_RS02255 0.83 +1.1
488,586 + EX31_RS02255 0.88 +0.1
488,586 + EX31_RS02255 0.88 +0.6
488,586 + EX31_RS02255 0.88 +1.3
488,586 + EX31_RS02255 0.88 +0.1
488,586 + EX31_RS02255 0.88 -1.7
488,586 + EX31_RS02255 0.88 +1.2
488,586 + EX31_RS02255 0.88 +0.9
488,586 + EX31_RS02255 0.88 -0.7
488,586 + EX31_RS02255 0.88 +0.1
488,586 + EX31_RS02255 0.88 -0.2
488,586 + EX31_RS02255 0.88 +0.9
488,587 - EX31_RS02255 0.88 -0.4
488,587 - EX31_RS02255 0.88 -0.3
488,587 - EX31_RS02255 0.88 +0.3
488,587 - EX31_RS02255 0.88 -0.5
488,587 - EX31_RS02255 0.88 -1.6
488,587 - EX31_RS02255 0.88 -1.5
488,587 - EX31_RS02255 0.88 -1.3
488,601 + EX31_RS02255 0.90 -1.1
488,633 - +0.0
488,633 - -0.2
488,739 - +0.8
488,742 + +0.5
488,742 + +0.1
488,743 - +0.2
488,743 - +0.0
488,743 - +1.7
488,745 + -0.0
488,753 - +1.4
488,754 + +0.1
488,754 + +0.4
488,755 - +0.5
488,823 + +0.6
488,823 + +0.1
488,824 - +0.9
488,824 - +1.7
488,824 - +0.1
488,854 + EX31_RS02260 0.14 -0.8
488,854 + EX31_RS02260 0.14 -0.6
488,855 - EX31_RS02260 0.14 +0.2
488,876 + EX31_RS02260 0.16 +0.4
489,064 - EX31_RS02260 0.41 +2.1
489,122 + EX31_RS02260 0.49 +0.4
489,122 + EX31_RS02260 0.49 +1.1
489,122 + EX31_RS02260 0.49 -2.8
489,122 + EX31_RS02260 0.49 -0.3
489,122 + EX31_RS02260 0.49 -1.1
489,122 + EX31_RS02260 0.49 -0.8
489,122 + EX31_RS02260 0.49 +1.1
489,122 + EX31_RS02260 0.49 -0.1
489,123 - EX31_RS02260 0.49 +1.1
489,123 - EX31_RS02260 0.49 -0.2
489,123 - EX31_RS02260 0.49 -0.2
489,123 - EX31_RS02260 0.49 +0.5
489,123 - EX31_RS02260 0.49 +0.7
489,123 - EX31_RS02260 0.49 -0.2
489,123 - EX31_RS02260 0.49 -0.3
489,123 - EX31_RS02260 0.49 +0.1
489,123 - EX31_RS02260 0.49 +0.5
489,123 - EX31_RS02260 0.49 +0.2
489,123 - EX31_RS02260 0.49 +1.0
489,123 - EX31_RS02260 0.49 -0.1
489,493 - -1.0
489,498 + +0.4
489,499 - +0.4
489,503 + +0.4
489,504 - -0.9
489,509 + +0.2
489,510 - +0.6
489,631 + +0.2
489,749 + EX31_RS02265 0.14 +0.2
489,749 + EX31_RS02265 0.14 -0.6
489,749 + EX31_RS02265 0.14 +0.6
489,749 + EX31_RS02265 0.14 -0.4
489,749 + EX31_RS02265 0.14 -0.1
489,749 + EX31_RS02265 0.14 -0.4
489,750 - EX31_RS02265 0.14 -1.2
489,750 - EX31_RS02265 0.14 +0.5
489,750 - EX31_RS02265 0.14 +0.1
489,750 - EX31_RS02265 0.14 +0.8
489,750 - EX31_RS02265 0.14 +0.0
489,750 - EX31_RS02265 0.14 +0.5
489,750 - EX31_RS02265 0.14 -1.7
489,750 - EX31_RS02265 0.14 -0.1
489,750 - EX31_RS02265 0.14 +0.1
489,752 - EX31_RS02265 0.15 +1.3
489,859 - EX31_RS02265 0.23 -0.9
489,859 - EX31_RS02265 0.23 -0.2
489,865 - EX31_RS02265 0.23 -1.4
489,874 - EX31_RS02265 0.24 +1.0
489,915 - EX31_RS02265 0.27 -0.8
489,915 - EX31_RS02265 0.27 +0.6
489,950 + EX31_RS02265 0.29 +0.0
489,954 - EX31_RS02265 0.30 +0.5
489,954 - EX31_RS02265 0.30 -0.3
490,043 - EX31_RS02265 0.36 +2.7
490,071 - EX31_RS02265 0.38 +0.8
490,110 + EX31_RS02265 0.41 +0.5
490,115 + EX31_RS02265 0.42 +0.3
490,115 + EX31_RS02265 0.42 +0.4
490,118 + EX31_RS02265 0.42 +0.3
490,127 + EX31_RS02265 0.42 -1.1
490,178 - EX31_RS02265 0.46 -0.2
490,178 - EX31_RS02265 0.46 +0.4
490,278 + EX31_RS02265 0.54 +1.9
490,279 - EX31_RS02265 0.54 +0.3
490,461 + EX31_RS02265 0.67 -0.1
490,462 - EX31_RS02265 0.67 -0.8

Or see this region's nucleotide sequence