Experiment: Ammonium chloride (N); RCH2 media; no shaking
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS00695 and EX31_RS00700 are separated by 18 nucleotides EX31_RS00700 and EX31_RS00705 overlap by 4 nucleotides EX31_RS00705 and EX31_RS00710 are separated by 236 nucleotides
EX31_RS00695: EX31_RS00695 - ABC transporter permease, at 147,364 to 148,302
_RS00695
EX31_RS00700: EX31_RS00700 - ABC transporter permease, at 148,321 to 149,136
_RS00700
EX31_RS00705: EX31_RS00705 - ABC transporter ATP-binding protein, at 149,133 to 150,722
_RS00705
EX31_RS00710: EX31_RS00710 - HAMP domain-containing protein, at 150,959 to 152,623
_RS00710
Position (kb) 149
150
151 Strain fitness (log2 ratio) -1
0
1
2
3 at 148.133 kb on + strand, within EX31_RS00695 at 148.133 kb on + strand, within EX31_RS00695 at 148.133 kb on + strand, within EX31_RS00695 at 148.134 kb on - strand, within EX31_RS00695 at 148.134 kb on - strand, within EX31_RS00695 at 148.159 kb on + strand, within EX31_RS00695 at 148.159 kb on + strand, within EX31_RS00695 at 148.159 kb on + strand, within EX31_RS00695 at 148.159 kb on + strand, within EX31_RS00695 at 148.159 kb on + strand, within EX31_RS00695 at 148.159 kb on + strand, within EX31_RS00695 at 148.159 kb on + strand, within EX31_RS00695 at 148.159 kb on + strand, within EX31_RS00695 at 148.160 kb on - strand, within EX31_RS00695 at 148.160 kb on - strand, within EX31_RS00695 at 148.160 kb on - strand, within EX31_RS00695 at 148.231 kb on + strand at 148.232 kb on - strand at 148.232 kb on - strand at 148.232 kb on - strand at 148.309 kb on - strand at 148.346 kb on + strand at 148.346 kb on + strand at 148.374 kb on + strand at 148.479 kb on + strand, within EX31_RS00700 at 148.578 kb on + strand, within EX31_RS00700 at 148.579 kb on - strand, within EX31_RS00700 at 148.579 kb on - strand, within EX31_RS00700 at 148.956 kb on + strand, within EX31_RS00700 at 149.146 kb on + strand at 149.146 kb on + strand at 149.146 kb on + strand at 149.146 kb on + strand at 149.147 kb on - strand at 149.147 kb on - strand at 149.147 kb on - strand at 149.166 kb on + strand at 149.339 kb on + strand, within EX31_RS00705 at 149.340 kb on - strand, within EX31_RS00705 at 149.412 kb on + strand, within EX31_RS00705 at 149.412 kb on + strand, within EX31_RS00705 at 149.412 kb on + strand, within EX31_RS00705 at 149.472 kb on - strand, within EX31_RS00705 at 149.472 kb on - strand, within EX31_RS00705 at 149.492 kb on + strand, within EX31_RS00705 at 149.492 kb on + strand, within EX31_RS00705 at 149.493 kb on - strand, within EX31_RS00705 at 149.500 kb on - strand, within EX31_RS00705 at 149.574 kb on + strand, within EX31_RS00705 at 149.760 kb on + strand, within EX31_RS00705 at 149.760 kb on + strand, within EX31_RS00705 at 149.761 kb on - strand, within EX31_RS00705 at 149.761 kb on - strand, within EX31_RS00705 at 149.794 kb on + strand, within EX31_RS00705 at 149.813 kb on - strand, within EX31_RS00705 at 149.826 kb on - strand, within EX31_RS00705 at 149.880 kb on + strand, within EX31_RS00705 at 149.881 kb on - strand, within EX31_RS00705 at 149.881 kb on - strand, within EX31_RS00705 at 150.069 kb on - strand, within EX31_RS00705 at 150.136 kb on + strand, within EX31_RS00705 at 150.136 kb on + strand, within EX31_RS00705 at 150.136 kb on + strand, within EX31_RS00705 at 150.137 kb on - strand, within EX31_RS00705 at 150.139 kb on + strand, within EX31_RS00705 at 150.233 kb on + strand, within EX31_RS00705 at 150.269 kb on + strand, within EX31_RS00705 at 150.269 kb on + strand, within EX31_RS00705 at 150.269 kb on + strand, within EX31_RS00705 at 150.270 kb on - strand, within EX31_RS00705 at 150.270 kb on - strand, within EX31_RS00705 at 150.396 kb on - strand, within EX31_RS00705 at 150.396 kb on - strand, within EX31_RS00705 at 150.491 kb on - strand, within EX31_RS00705 at 150.525 kb on + strand, within EX31_RS00705 at 150.525 kb on + strand, within EX31_RS00705 at 150.525 kb on + strand, within EX31_RS00705 at 150.525 kb on + strand, within EX31_RS00705 at 150.526 kb on - strand, within EX31_RS00705 at 150.526 kb on - strand, within EX31_RS00705 at 150.526 kb on - strand, within EX31_RS00705 at 150.526 kb on - strand, within EX31_RS00705 at 150.526 kb on - strand, within EX31_RS00705 at 150.533 kb on + strand, within EX31_RS00705 at 150.547 kb on + strand, within EX31_RS00705 at 150.556 kb on + strand, within EX31_RS00705 at 150.556 kb on + strand, within EX31_RS00705 at 150.556 kb on + strand, within EX31_RS00705 at 150.557 kb on - strand, within EX31_RS00705 at 150.652 kb on - strand at 150.664 kb on + strand at 150.716 kb on + strand at 150.716 kb on + strand at 150.717 kb on - strand at 150.723 kb on + strand at 150.812 kb on + strand at 150.836 kb on + strand at 150.840 kb on + strand at 150.841 kb on - strand at 150.862 kb on + strand at 151.162 kb on + strand, within EX31_RS00710 at 151.224 kb on + strand, within EX31_RS00710 at 151.224 kb on + strand, within EX31_RS00710 at 151.443 kb on - strand, within EX31_RS00710 at 151.501 kb on + strand, within EX31_RS00710 at 151.589 kb on + strand, within EX31_RS00710 at 151.624 kb on + strand, within EX31_RS00710
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N); RCH2 media; no shaking remove 148,133 + EX31_RS00695 0.82 -0.2 148,133 + EX31_RS00695 0.82 +0.9 148,133 + EX31_RS00695 0.82 -1.5 148,134 - EX31_RS00695 0.82 -0.6 148,134 - EX31_RS00695 0.82 -1.5 148,159 + EX31_RS00695 0.85 +0.9 148,159 + EX31_RS00695 0.85 -0.4 148,159 + EX31_RS00695 0.85 +0.3 148,159 + EX31_RS00695 0.85 +1.1 148,159 + EX31_RS00695 0.85 +0.7 148,159 + EX31_RS00695 0.85 +1.7 148,159 + EX31_RS00695 0.85 +0.4 148,159 + EX31_RS00695 0.85 +0.3 148,160 - EX31_RS00695 0.85 +1.0 148,160 - EX31_RS00695 0.85 +0.6 148,160 - EX31_RS00695 0.85 +0.2 148,231 + -0.8 148,232 - +0.5 148,232 - -1.5 148,232 - +0.5 148,309 - +0.2 148,346 + -0.5 148,346 + +0.3 148,374 + -0.7 148,479 + EX31_RS00700 0.19 -1.7 148,578 + EX31_RS00700 0.31 +0.2 148,579 - EX31_RS00700 0.32 -0.2 148,579 - EX31_RS00700 0.32 +0.2 148,956 + EX31_RS00700 0.78 -1.6 149,146 + +1.1 149,146 + -0.2 149,146 + +0.5 149,146 + +1.1 149,147 - -1.2 149,147 - +0.1 149,147 - +1.3 149,166 + -1.2 149,339 + EX31_RS00705 0.13 -1.1 149,340 - EX31_RS00705 0.13 -0.4 149,412 + EX31_RS00705 0.18 -1.0 149,412 + EX31_RS00705 0.18 +0.2 149,412 + EX31_RS00705 0.18 -1.5 149,472 - EX31_RS00705 0.21 -0.2 149,472 - EX31_RS00705 0.21 +0.9 149,492 + EX31_RS00705 0.23 -0.2 149,492 + EX31_RS00705 0.23 +3.3 149,493 - EX31_RS00705 0.23 +0.9 149,500 - EX31_RS00705 0.23 -0.0 149,574 + EX31_RS00705 0.28 +1.5 149,760 + EX31_RS00705 0.39 -1.2 149,760 + EX31_RS00705 0.39 +1.8 149,761 - EX31_RS00705 0.39 +1.9 149,761 - EX31_RS00705 0.39 +0.5 149,794 + EX31_RS00705 0.42 -0.4 149,813 - EX31_RS00705 0.43 +0.5 149,826 - EX31_RS00705 0.44 -1.4 149,880 + EX31_RS00705 0.47 -0.6 149,881 - EX31_RS00705 0.47 -0.5 149,881 - EX31_RS00705 0.47 +0.4 150,069 - EX31_RS00705 0.59 +0.3 150,136 + EX31_RS00705 0.63 -1.1 150,136 + EX31_RS00705 0.63 -0.8 150,136 + EX31_RS00705 0.63 -0.7 150,137 - EX31_RS00705 0.63 +1.1 150,139 + EX31_RS00705 0.63 +0.1 150,233 + EX31_RS00705 0.69 +1.0 150,269 + EX31_RS00705 0.71 +0.3 150,269 + EX31_RS00705 0.71 -1.0 150,269 + EX31_RS00705 0.71 +0.5 150,270 - EX31_RS00705 0.72 -0.1 150,270 - EX31_RS00705 0.72 +1.3 150,396 - EX31_RS00705 0.79 -0.6 150,396 - EX31_RS00705 0.79 -1.4 150,491 - EX31_RS00705 0.85 -1.6 150,525 + EX31_RS00705 0.88 +0.9 150,525 + EX31_RS00705 0.88 -0.7 150,525 + EX31_RS00705 0.88 -1.7 150,525 + EX31_RS00705 0.88 +0.1 150,526 - EX31_RS00705 0.88 +0.9 150,526 - EX31_RS00705 0.88 -0.5 150,526 - EX31_RS00705 0.88 +2.7 150,526 - EX31_RS00705 0.88 +1.1 150,526 - EX31_RS00705 0.88 +2.3 150,533 + EX31_RS00705 0.88 -0.6 150,547 + EX31_RS00705 0.89 +0.5 150,556 + EX31_RS00705 0.89 -1.2 150,556 + EX31_RS00705 0.89 +0.6 150,556 + EX31_RS00705 0.89 +0.1 150,557 - EX31_RS00705 0.90 -1.2 150,652 - +0.4 150,664 + -0.1 150,716 + +1.1 150,716 + +0.1 150,717 - +0.9 150,723 + -1.4 150,812 + +0.9 150,836 + +0.3 150,840 + +1.6 150,841 - +1.2 150,862 + -0.4 151,162 + EX31_RS00710 0.12 -0.2 151,224 + EX31_RS00710 0.16 +2.1 151,224 + EX31_RS00710 0.16 +1.7 151,443 - EX31_RS00710 0.29 +0.1 151,501 + EX31_RS00710 0.33 +0.0 151,589 + EX31_RS00710 0.38 -0.0 151,624 + EX31_RS00710 0.40 -0.0
Or see this region's nucleotide sequence