Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4602

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4601 and Ac3H11_4602 are separated by 435 nucleotidesAc3H11_4602 and Ac3H11_4603 are separated by 132 nucleotidesAc3H11_4603 and Ac3H11_4604 are separated by 90 nucleotides Ac3H11_4601 - Putative type II restriction enzyme NmeDIP (EC 3.1.21.4) (Endonuclease NmeDIP) (R.NmeDIP), at 201,671 to 202,933 _4601 Ac3H11_4602 - Flagellar hook-basal body complex protein FliE, at 203,369 to 203,482 _4602 Ac3H11_4603 - hypothetical protein, at 203,615 to 204,142 _4603 Ac3H11_4604 - hypothetical protein, at 204,233 to 204,502 _4604 Position (kb) 203 204Strain fitness (log2 ratio) -1 0 1 2at 202.447 kb on + strand, within Ac3H11_4601at 202.527 kb on - strand, within Ac3H11_4601at 202.617 kb on + strand, within Ac3H11_4601at 202.618 kb on - strand, within Ac3H11_4601at 202.627 kb on + strand, within Ac3H11_4601at 202.627 kb on + strand, within Ac3H11_4601at 202.627 kb on + strand, within Ac3H11_4601at 202.628 kb on - strand, within Ac3H11_4601at 202.682 kb on + strand, within Ac3H11_4601at 202.682 kb on + strand, within Ac3H11_4601at 202.682 kb on + strand, within Ac3H11_4601at 202.838 kb on + strandat 202.847 kb on + strandat 203.046 kb on + strandat 203.046 kb on + strandat 203.046 kb on + strandat 203.046 kb on + strandat 203.047 kb on - strandat 203.047 kb on - strandat 203.054 kb on - strandat 203.054 kb on - strandat 203.054 kb on - strandat 203.054 kb on - strandat 203.056 kb on + strandat 203.056 kb on + strandat 203.056 kb on + strandat 203.057 kb on - strandat 203.057 kb on - strandat 203.057 kb on - strandat 203.057 kb on - strandat 203.057 kb on - strandat 203.075 kb on + strandat 203.075 kb on + strandat 203.075 kb on + strandat 203.075 kb on + strandat 203.076 kb on - strandat 203.076 kb on - strandat 203.076 kb on - strandat 203.076 kb on - strandat 203.096 kb on + strandat 203.097 kb on - strandat 203.118 kb on - strandat 203.404 kb on + strand, within Ac3H11_4602at 203.405 kb on - strand, within Ac3H11_4602at 203.453 kb on + strand, within Ac3H11_4602at 203.454 kb on - strand, within Ac3H11_4602at 203.454 kb on - strand, within Ac3H11_4602at 203.454 kb on - strand, within Ac3H11_4602at 203.454 kb on - strand, within Ac3H11_4602at 203.454 kb on - strand, within Ac3H11_4602at 203.454 kb on - strand, within Ac3H11_4602at 203.454 kb on - strand, within Ac3H11_4602at 203.497 kb on + strandat 203.497 kb on + strandat 203.497 kb on + strandat 203.498 kb on - strandat 203.498 kb on - strandat 203.777 kb on + strand, within Ac3H11_4603at 203.777 kb on + strand, within Ac3H11_4603at 203.777 kb on + strand, within Ac3H11_4603at 203.778 kb on - strand, within Ac3H11_4603at 203.778 kb on - strand, within Ac3H11_4603at 203.884 kb on + strand, within Ac3H11_4603at 203.947 kb on + strand, within Ac3H11_4603at 203.948 kb on - strand, within Ac3H11_4603at 203.948 kb on - strand, within Ac3H11_4603at 203.948 kb on - strand, within Ac3H11_4603at 203.986 kb on + strand, within Ac3H11_4603at 203.986 kb on + strand, within Ac3H11_4603at 203.986 kb on + strand, within Ac3H11_4603at 203.986 kb on + strand, within Ac3H11_4603at 203.986 kb on + strand, within Ac3H11_4603at 203.986 kb on + strand, within Ac3H11_4603at 203.986 kb on + strand, within Ac3H11_4603at 203.987 kb on - strand, within Ac3H11_4603at 203.987 kb on - strand, within Ac3H11_4603at 204.067 kb on + strand, within Ac3H11_4603at 204.067 kb on + strand, within Ac3H11_4603at 204.068 kb on - strand, within Ac3H11_4603at 204.068 kb on - strand, within Ac3H11_4603at 204.107 kb on - strandat 204.162 kb on + strandat 204.162 kb on + strandat 204.163 kb on - strandat 204.213 kb on + strandat 204.381 kb on + strand, within Ac3H11_4604at 204.382 kb on - strand, within Ac3H11_4604at 204.385 kb on + strand, within Ac3H11_4604at 204.386 kb on - strand, within Ac3H11_4604at 204.386 kb on - strand, within Ac3H11_4604at 204.411 kb on + strand, within Ac3H11_4604at 204.440 kb on + strand, within Ac3H11_4604at 204.440 kb on + strand, within Ac3H11_4604at 204.441 kb on - strand, within Ac3H11_4604

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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202,447 + Ac3H11_4601 0.61 +0.7
202,527 - Ac3H11_4601 0.68 +1.2
202,617 + Ac3H11_4601 0.75 +0.0
202,618 - Ac3H11_4601 0.75 +1.2
202,627 + Ac3H11_4601 0.76 +0.2
202,627 + Ac3H11_4601 0.76 -0.7
202,627 + Ac3H11_4601 0.76 +0.3
202,628 - Ac3H11_4601 0.76 +0.8
202,682 + Ac3H11_4601 0.80 +0.2
202,682 + Ac3H11_4601 0.80 +0.4
202,682 + Ac3H11_4601 0.80 +0.1
202,838 + +0.4
202,847 + +0.3
203,046 + +0.6
203,046 + -0.4
203,046 + -0.4
203,046 + +0.6
203,047 - +1.5
203,047 - +1.0
203,054 - -0.0
203,054 - +0.7
203,054 - -0.4
203,054 - +0.9
203,056 + +0.3
203,056 + -0.4
203,056 + +0.0
203,057 - +1.2
203,057 - +2.7
203,057 - -0.2
203,057 - +0.0
203,057 - -0.6
203,075 + -1.0
203,075 + +0.5
203,075 + +0.8
203,075 + -0.0
203,076 - +0.9
203,076 - +0.1
203,076 - -0.1
203,076 - -0.0
203,096 + +0.3
203,097 - +0.7
203,118 - -0.9
203,404 + Ac3H11_4602 0.31 +0.2
203,405 - Ac3H11_4602 0.32 +0.6
203,453 + Ac3H11_4602 0.74 +0.0
203,454 - Ac3H11_4602 0.75 +0.2
203,454 - Ac3H11_4602 0.75 +0.3
203,454 - Ac3H11_4602 0.75 -0.0
203,454 - Ac3H11_4602 0.75 -0.5
203,454 - Ac3H11_4602 0.75 +0.2
203,454 - Ac3H11_4602 0.75 +1.3
203,454 - Ac3H11_4602 0.75 -0.1
203,497 + +0.9
203,497 + +0.4
203,497 + +0.2
203,498 - +0.2
203,498 - +0.9
203,777 + Ac3H11_4603 0.31 +0.5
203,777 + Ac3H11_4603 0.31 -0.1
203,777 + Ac3H11_4603 0.31 +1.1
203,778 - Ac3H11_4603 0.31 +0.4
203,778 - Ac3H11_4603 0.31 +0.6
203,884 + Ac3H11_4603 0.51 -0.8
203,947 + Ac3H11_4603 0.63 +0.6
203,948 - Ac3H11_4603 0.63 -0.4
203,948 - Ac3H11_4603 0.63 -1.1
203,948 - Ac3H11_4603 0.63 +0.2
203,986 + Ac3H11_4603 0.70 +0.8
203,986 + Ac3H11_4603 0.70 -0.3
203,986 + Ac3H11_4603 0.70 +0.7
203,986 + Ac3H11_4603 0.70 -0.4
203,986 + Ac3H11_4603 0.70 +0.4
203,986 + Ac3H11_4603 0.70 +0.8
203,986 + Ac3H11_4603 0.70 +0.4
203,987 - Ac3H11_4603 0.70 -0.6
203,987 - Ac3H11_4603 0.70 +0.1
204,067 + Ac3H11_4603 0.86 +0.7
204,067 + Ac3H11_4603 0.86 -0.2
204,068 - Ac3H11_4603 0.86 +0.1
204,068 - Ac3H11_4603 0.86 +0.4
204,107 - +0.8
204,162 + -0.8
204,162 + +0.7
204,163 - +0.5
204,213 + +0.6
204,381 + Ac3H11_4604 0.55 -0.4
204,382 - Ac3H11_4604 0.55 -0.1
204,385 + Ac3H11_4604 0.56 +0.4
204,386 - Ac3H11_4604 0.57 -0.2
204,386 - Ac3H11_4604 0.57 +0.5
204,411 + Ac3H11_4604 0.66 +0.4
204,440 + Ac3H11_4604 0.77 +0.1
204,440 + Ac3H11_4604 0.77 +1.3
204,441 - Ac3H11_4604 0.77 +0.6

Or see this region's nucleotide sequence