Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3828 and Ac3H11_3829 overlap by 1 nucleotides Ac3H11_3829 and Ac3H11_3830 overlap by 4 nucleotides Ac3H11_3830 and Ac3H11_3831 are separated by 185 nucleotides Ac3H11_3831 and Ac3H11_3832 overlap by 4 nucleotides
Ac3H11_3828 - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62), at 43,974 to 45,311
_3828
Ac3H11_3829 - Dethiobiotin synthetase (EC 6.3.3.3), at 45,311 to 45,982
_3829
Ac3H11_3830 - 8-amino-7-oxononanoate synthase (EC 2.3.1.47), at 45,979 to 47,250
_3830
Ac3H11_3831 - two component transcriptional regulator, LuxR family, at 47,436 to 48,041
_3831
Ac3H11_3832 - integral membrane sensor hybrid histidine kinase, at 48,038 to 49,825
_3832
Position (kb) 45
46
47
48 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 45.156 kb on + strand, within Ac3H11_3828 at 45.213 kb on + strand at 45.213 kb on + strand at 45.228 kb on + strand at 45.228 kb on + strand at 45.229 kb on - strand at 45.878 kb on + strand, within Ac3H11_3829 at 45.879 kb on - strand, within Ac3H11_3829 at 45.879 kb on - strand, within Ac3H11_3829 at 46.312 kb on + strand, within Ac3H11_3830 at 46.312 kb on + strand, within Ac3H11_3830 at 46.312 kb on + strand, within Ac3H11_3830 at 46.312 kb on + strand, within Ac3H11_3830 at 46.313 kb on - strand, within Ac3H11_3830 at 46.313 kb on - strand, within Ac3H11_3830 at 46.318 kb on + strand, within Ac3H11_3830 at 46.318 kb on + strand, within Ac3H11_3830 at 46.327 kb on + strand, within Ac3H11_3830 at 46.708 kb on + strand, within Ac3H11_3830 at 46.708 kb on + strand, within Ac3H11_3830 at 46.708 kb on + strand, within Ac3H11_3830 at 46.708 kb on + strand, within Ac3H11_3830 at 46.709 kb on - strand, within Ac3H11_3830 at 46.709 kb on - strand, within Ac3H11_3830 at 46.709 kb on - strand, within Ac3H11_3830 at 46.709 kb on - strand, within Ac3H11_3830 at 46.804 kb on + strand, within Ac3H11_3830 at 46.804 kb on + strand, within Ac3H11_3830 at 46.805 kb on - strand, within Ac3H11_3830 at 46.805 kb on - strand, within Ac3H11_3830 at 46.805 kb on - strand, within Ac3H11_3830 at 47.418 kb on + strand at 47.671 kb on + strand, within Ac3H11_3831 at 48.096 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 45,156 + Ac3H11_3828 0.88 +0.2 45,213 + -1.9 45,213 + -1.4 45,228 + +1.9 45,228 + +1.3 45,229 - +0.8 45,878 + Ac3H11_3829 0.84 -1.7 45,879 - Ac3H11_3829 0.85 -0.0 45,879 - Ac3H11_3829 0.85 +0.7 46,312 + Ac3H11_3830 0.26 +0.3 46,312 + Ac3H11_3830 0.26 +0.5 46,312 + Ac3H11_3830 0.26 -0.2 46,312 + Ac3H11_3830 0.26 -0.2 46,313 - Ac3H11_3830 0.26 +0.1 46,313 - Ac3H11_3830 0.26 -0.5 46,318 + Ac3H11_3830 0.27 +0.8 46,318 + Ac3H11_3830 0.27 +0.3 46,327 + Ac3H11_3830 0.27 -0.1 46,708 + Ac3H11_3830 0.57 +0.7 46,708 + Ac3H11_3830 0.57 -0.8 46,708 + Ac3H11_3830 0.57 -0.9 46,708 + Ac3H11_3830 0.57 +1.4 46,709 - Ac3H11_3830 0.57 -0.4 46,709 - Ac3H11_3830 0.57 -1.0 46,709 - Ac3H11_3830 0.57 +0.7 46,709 - Ac3H11_3830 0.57 +0.6 46,804 + Ac3H11_3830 0.65 -1.0 46,804 + Ac3H11_3830 0.65 +0.4 46,805 - Ac3H11_3830 0.65 -0.1 46,805 - Ac3H11_3830 0.65 +4.5 46,805 - Ac3H11_3830 0.65 -0.6 47,418 + +0.2 47,671 + Ac3H11_3831 0.39 -0.8 48,096 - +1.3
Or see this region's nucleotide sequence