Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1733

Experiment: D-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_1732 and Ac3H11_1733 are separated by 15 nucleotidesAc3H11_1733 and Ac3H11_1734 are separated by 173 nucleotides Ac3H11_1732 - Tricarboxylate transport membrane protein TctA, at 339,584 to 341,095 _1732 Ac3H11_1733 - Tricarboxylate transport protein TctB, at 341,111 to 341,599 _1733 Ac3H11_1734 - Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 341,773 to 343,566 _1734 Position (kb) 341 342Strain fitness (log2 ratio) -1 0 1 2at 340.258 kb on - strand, within Ac3H11_1732at 340.324 kb on + strand, within Ac3H11_1732at 340.325 kb on - strand, within Ac3H11_1732at 340.656 kb on + strand, within Ac3H11_1732at 340.657 kb on - strand, within Ac3H11_1732at 340.878 kb on + strand, within Ac3H11_1732at 340.878 kb on + strand, within Ac3H11_1732at 340.879 kb on - strand, within Ac3H11_1732at 340.890 kb on + strand, within Ac3H11_1732at 340.891 kb on - strand, within Ac3H11_1732at 340.893 kb on + strand, within Ac3H11_1732at 340.894 kb on - strand, within Ac3H11_1732at 340.894 kb on - strand, within Ac3H11_1732at 340.894 kb on - strand, within Ac3H11_1732at 340.894 kb on - strand, within Ac3H11_1732at 340.894 kb on - strand, within Ac3H11_1732at 340.894 kb on - strand, within Ac3H11_1732at 340.894 kb on - strand, within Ac3H11_1732at 340.894 kb on - strand, within Ac3H11_1732at 340.938 kb on + strand, within Ac3H11_1732at 340.938 kb on + strand, within Ac3H11_1732at 340.938 kb on + strand, within Ac3H11_1732at 340.938 kb on + strand, within Ac3H11_1732at 340.938 kb on + strand, within Ac3H11_1732at 340.938 kb on + strand, within Ac3H11_1732at 340.938 kb on + strand, within Ac3H11_1732at 340.938 kb on + strand, within Ac3H11_1732at 340.939 kb on - strand, within Ac3H11_1732at 340.939 kb on - strand, within Ac3H11_1732at 341.031 kb on + strandat 341.032 kb on - strandat 341.032 kb on - strandat 341.032 kb on - strandat 341.032 kb on - strandat 341.083 kb on + strandat 341.175 kb on + strand, within Ac3H11_1733at 341.175 kb on + strand, within Ac3H11_1733at 341.175 kb on + strand, within Ac3H11_1733at 341.175 kb on + strand, within Ac3H11_1733at 341.175 kb on + strand, within Ac3H11_1733at 341.175 kb on + strand, within Ac3H11_1733at 341.175 kb on + strand, within Ac3H11_1733at 341.175 kb on + strand, within Ac3H11_1733at 341.175 kb on + strand, within Ac3H11_1733at 341.176 kb on - strand, within Ac3H11_1733at 341.176 kb on - strand, within Ac3H11_1733at 341.176 kb on - strand, within Ac3H11_1733at 341.176 kb on - strand, within Ac3H11_1733at 341.176 kb on - strand, within Ac3H11_1733at 341.176 kb on - strand, within Ac3H11_1733at 341.265 kb on + strand, within Ac3H11_1733at 341.265 kb on + strand, within Ac3H11_1733at 341.265 kb on + strand, within Ac3H11_1733at 341.265 kb on + strand, within Ac3H11_1733at 341.265 kb on + strand, within Ac3H11_1733at 341.265 kb on + strand, within Ac3H11_1733at 341.265 kb on + strand, within Ac3H11_1733at 341.265 kb on + strand, within Ac3H11_1733at 341.265 kb on + strand, within Ac3H11_1733at 341.265 kb on + strand, within Ac3H11_1733at 341.265 kb on + strand, within Ac3H11_1733at 341.266 kb on - strand, within Ac3H11_1733at 341.266 kb on - strand, within Ac3H11_1733at 341.266 kb on - strand, within Ac3H11_1733at 341.266 kb on - strand, within Ac3H11_1733at 341.266 kb on - strand, within Ac3H11_1733at 341.266 kb on - strand, within Ac3H11_1733at 341.266 kb on - strand, within Ac3H11_1733at 341.266 kb on - strand, within Ac3H11_1733at 341.266 kb on - strand, within Ac3H11_1733at 341.266 kb on - strand, within Ac3H11_1733at 341.478 kb on + strand, within Ac3H11_1733at 341.478 kb on + strand, within Ac3H11_1733at 341.479 kb on - strand, within Ac3H11_1733at 341.514 kb on + strand, within Ac3H11_1733at 341.514 kb on + strand, within Ac3H11_1733at 341.514 kb on + strand, within Ac3H11_1733at 341.514 kb on + strand, within Ac3H11_1733at 341.514 kb on + strand, within Ac3H11_1733at 341.514 kb on + strand, within Ac3H11_1733at 341.514 kb on + strand, within Ac3H11_1733at 341.514 kb on + strand, within Ac3H11_1733at 341.514 kb on + strand, within Ac3H11_1733at 341.514 kb on + strand, within Ac3H11_1733at 341.514 kb on + strand, within Ac3H11_1733at 341.515 kb on - strand, within Ac3H11_1733at 341.515 kb on - strand, within Ac3H11_1733at 341.515 kb on - strand, within Ac3H11_1733at 341.515 kb on - strand, within Ac3H11_1733at 341.676 kb on + strandat 341.676 kb on + strandat 341.676 kb on + strandat 341.676 kb on + strandat 341.676 kb on + strandat 341.676 kb on + strandat 341.677 kb on - strandat 341.677 kb on - strandat 341.677 kb on - strandat 341.677 kb on - strandat 341.677 kb on - strandat 341.774 kb on + strandat 341.774 kb on + strandat 341.775 kb on - strandat 341.775 kb on - strandat 341.775 kb on - strandat 341.775 kb on - strandat 341.775 kb on - strandat 341.957 kb on + strand, within Ac3H11_1734at 341.957 kb on + strand, within Ac3H11_1734at 341.957 kb on + strand, within Ac3H11_1734at 341.957 kb on + strand, within Ac3H11_1734at 341.958 kb on - strand, within Ac3H11_1734at 341.958 kb on - strand, within Ac3H11_1734at 342.017 kb on + strand, within Ac3H11_1734at 342.018 kb on - strand, within Ac3H11_1734at 342.168 kb on - strand, within Ac3H11_1734at 342.477 kb on - strand, within Ac3H11_1734at 342.477 kb on - strand, within Ac3H11_1734

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
remove
340,258 - Ac3H11_1732 0.45 +2.0
340,324 + Ac3H11_1732 0.49 +0.4
340,325 - Ac3H11_1732 0.49 -0.1
340,656 + Ac3H11_1732 0.71 +1.0
340,657 - Ac3H11_1732 0.71 +0.5
340,878 + Ac3H11_1732 0.86 +1.0
340,878 + Ac3H11_1732 0.86 +1.2
340,879 - Ac3H11_1732 0.86 +1.7
340,890 + Ac3H11_1732 0.86 +1.8
340,891 - Ac3H11_1732 0.86 +1.5
340,893 + Ac3H11_1732 0.87 -0.3
340,894 - Ac3H11_1732 0.87 +1.7
340,894 - Ac3H11_1732 0.87 +1.8
340,894 - Ac3H11_1732 0.87 +1.1
340,894 - Ac3H11_1732 0.87 +1.9
340,894 - Ac3H11_1732 0.87 +1.2
340,894 - Ac3H11_1732 0.87 +1.2
340,894 - Ac3H11_1732 0.87 +0.4
340,894 - Ac3H11_1732 0.87 +1.5
340,938 + Ac3H11_1732 0.90 +1.5
340,938 + Ac3H11_1732 0.90 +0.5
340,938 + Ac3H11_1732 0.90 +1.0
340,938 + Ac3H11_1732 0.90 +1.2
340,938 + Ac3H11_1732 0.90 +1.2
340,938 + Ac3H11_1732 0.90 +0.3
340,938 + Ac3H11_1732 0.90 +1.2
340,938 + Ac3H11_1732 0.90 +1.4
340,939 - Ac3H11_1732 0.90 +0.3
340,939 - Ac3H11_1732 0.90 +1.2
341,031 + +1.2
341,032 - +1.0
341,032 - +1.3
341,032 - +0.2
341,032 - +0.9
341,083 + +1.1
341,175 + Ac3H11_1733 0.13 +1.2
341,175 + Ac3H11_1733 0.13 +1.8
341,175 + Ac3H11_1733 0.13 +1.1
341,175 + Ac3H11_1733 0.13 +0.5
341,175 + Ac3H11_1733 0.13 +1.2
341,175 + Ac3H11_1733 0.13 +0.7
341,175 + Ac3H11_1733 0.13 +1.7
341,175 + Ac3H11_1733 0.13 +1.5
341,175 + Ac3H11_1733 0.13 +1.3
341,176 - Ac3H11_1733 0.13 +1.2
341,176 - Ac3H11_1733 0.13 +1.5
341,176 - Ac3H11_1733 0.13 +0.5
341,176 - Ac3H11_1733 0.13 -0.4
341,176 - Ac3H11_1733 0.13 +1.5
341,176 - Ac3H11_1733 0.13 +0.6
341,265 + Ac3H11_1733 0.31 +0.3
341,265 + Ac3H11_1733 0.31 +1.0
341,265 + Ac3H11_1733 0.31 +0.8
341,265 + Ac3H11_1733 0.31 +1.4
341,265 + Ac3H11_1733 0.31 +1.0
341,265 + Ac3H11_1733 0.31 +0.4
341,265 + Ac3H11_1733 0.31 +1.5
341,265 + Ac3H11_1733 0.31 +0.7
341,265 + Ac3H11_1733 0.31 +1.4
341,265 + Ac3H11_1733 0.31 +1.5
341,265 + Ac3H11_1733 0.31 +1.6
341,266 - Ac3H11_1733 0.32 +2.1
341,266 - Ac3H11_1733 0.32 +1.4
341,266 - Ac3H11_1733 0.32 +1.6
341,266 - Ac3H11_1733 0.32 +1.1
341,266 - Ac3H11_1733 0.32 +0.6
341,266 - Ac3H11_1733 0.32 +1.0
341,266 - Ac3H11_1733 0.32 +2.7
341,266 - Ac3H11_1733 0.32 -0.1
341,266 - Ac3H11_1733 0.32 +0.9
341,266 - Ac3H11_1733 0.32 -0.4
341,478 + Ac3H11_1733 0.75 +2.2
341,478 + Ac3H11_1733 0.75 +0.9
341,479 - Ac3H11_1733 0.75 +0.5
341,514 + Ac3H11_1733 0.82 +0.5
341,514 + Ac3H11_1733 0.82 -0.5
341,514 + Ac3H11_1733 0.82 +1.0
341,514 + Ac3H11_1733 0.82 +1.3
341,514 + Ac3H11_1733 0.82 +1.7
341,514 + Ac3H11_1733 0.82 -0.0
341,514 + Ac3H11_1733 0.82 +2.1
341,514 + Ac3H11_1733 0.82 +0.8
341,514 + Ac3H11_1733 0.82 +1.2
341,514 + Ac3H11_1733 0.82 +1.9
341,514 + Ac3H11_1733 0.82 +1.4
341,515 - Ac3H11_1733 0.83 -0.1
341,515 - Ac3H11_1733 0.83 +1.3
341,515 - Ac3H11_1733 0.83 +1.5
341,515 - Ac3H11_1733 0.83 +0.9
341,676 + +1.2
341,676 + +0.8
341,676 + +1.3
341,676 + +1.3
341,676 + +0.5
341,676 + -0.4
341,677 - +0.9
341,677 - +1.0
341,677 - +0.6
341,677 - +1.8
341,677 - +1.6
341,774 + +1.1
341,774 + +0.3
341,775 - +0.3
341,775 - -0.3
341,775 - +0.5
341,775 - -0.4
341,775 - +0.6
341,957 + Ac3H11_1734 0.10 -0.7
341,957 + Ac3H11_1734 0.10 -0.3
341,957 + Ac3H11_1734 0.10 -0.5
341,957 + Ac3H11_1734 0.10 +1.1
341,958 - Ac3H11_1734 0.10 +0.9
341,958 - Ac3H11_1734 0.10 -0.1
342,017 + Ac3H11_1734 0.14 +0.1
342,018 - Ac3H11_1734 0.14 +0.5
342,168 - Ac3H11_1734 0.22 +1.2
342,477 - Ac3H11_1734 0.39 +0.4
342,477 - Ac3H11_1734 0.39 -0.0

Or see this region's nucleotide sequence