Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_13220

Experiment: Cobalt chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_13205 and AO353_13210 are separated by 226 nucleotidesAO353_13210 and AO353_13215 are separated by 28 nucleotidesAO353_13215 and AO353_13220 are separated by 36 nucleotidesAO353_13220 and AO353_13225 are separated by 19 nucleotidesAO353_13225 and AO353_13230 are separated by 137 nucleotides AO353_13205: AO353_13205 - 23S rRNA methyltransferase, at 2,928,455 to 2,929,222 _13205 AO353_13210: AO353_13210 - 30S ribosomal protein S6, at 2,929,449 to 2,929,871 _13210 AO353_13215: AO353_13215 - 30S ribosomal protein S18, at 2,929,900 to 2,930,130 _13215 AO353_13220: AO353_13220 - hypothetical protein, at 2,930,167 to 2,931,060 _13220 AO353_13225: AO353_13225 - 50S ribosomal protein L9, at 2,931,080 to 2,931,526 _13225 AO353_13230: AO353_13230 - replicative DNA helicase, at 2,931,664 to 2,933,061 _13230 Position (kb) 2930 2931 2932Strain fitness (log2 ratio) -3 -2 -1 0 1at 2929.287 kb on + strandat 2929.287 kb on + strandat 2929.384 kb on + strandat 2930.710 kb on + strand, within AO353_13220at 2930.710 kb on + strand, within AO353_13220at 2930.710 kb on + strand, within AO353_13220at 2930.929 kb on + strand, within AO353_13220at 2930.929 kb on + strand, within AO353_13220at 2930.929 kb on + strand, within AO353_13220at 2930.929 kb on + strand, within AO353_13220at 2930.929 kb on + strand, within AO353_13220at 2930.929 kb on + strand, within AO353_13220at 2930.929 kb on + strand, within AO353_13220at 2930.929 kb on + strand, within AO353_13220at 2930.929 kb on + strand, within AO353_13220at 2930.929 kb on + strand, within AO353_13220at 2930.929 kb on + strand, within AO353_13220at 2930.929 kb on + strand, within AO353_13220at 2930.929 kb on + strand, within AO353_13220at 2930.929 kb on + strand, within AO353_13220at 2930.930 kb on - strand, within AO353_13220at 2930.930 kb on - strand, within AO353_13220at 2930.930 kb on - strand, within AO353_13220at 2930.930 kb on - strand, within AO353_13220at 2930.933 kb on + strand, within AO353_13220at 2930.934 kb on - strand, within AO353_13220at 2930.934 kb on - strand, within AO353_13220at 2930.949 kb on + strand, within AO353_13220at 2930.949 kb on + strand, within AO353_13220at 2930.949 kb on + strand, within AO353_13220at 2930.950 kb on - strand, within AO353_13220at 2931.059 kb on - strandat 2931.066 kb on - strandat 2931.160 kb on + strand, within AO353_13225at 2931.161 kb on - strand, within AO353_13225at 2931.161 kb on - strand, within AO353_13225at 2931.161 kb on - strand, within AO353_13225at 2931.164 kb on + strand, within AO353_13225at 2931.164 kb on + strand, within AO353_13225at 2931.165 kb on - strand, within AO353_13225at 2931.313 kb on + strand, within AO353_13225at 2931.313 kb on + strand, within AO353_13225at 2931.450 kb on + strand, within AO353_13225at 2931.501 kb on + strandat 2931.524 kb on + strandat 2931.524 kb on + strandat 2931.531 kb on + strandat 2931.531 kb on + strandat 2931.531 kb on + strandat 2931.531 kb on + strandat 2931.531 kb on + strandat 2931.587 kb on + strandat 2931.587 kb on + strandat 2931.628 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM
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2,929,287 + -1.4
2,929,287 + +0.2
2,929,384 + -1.6
2,930,710 + AO353_13220 0.61 -1.9
2,930,710 + AO353_13220 0.61 -0.5
2,930,710 + AO353_13220 0.61 -1.4
2,930,929 + AO353_13220 0.85 -0.9
2,930,929 + AO353_13220 0.85 -1.8
2,930,929 + AO353_13220 0.85 -3.0
2,930,929 + AO353_13220 0.85 -1.5
2,930,929 + AO353_13220 0.85 -1.0
2,930,929 + AO353_13220 0.85 -1.4
2,930,929 + AO353_13220 0.85 -0.7
2,930,929 + AO353_13220 0.85 -1.6
2,930,929 + AO353_13220 0.85 -0.3
2,930,929 + AO353_13220 0.85 +0.1
2,930,929 + AO353_13220 0.85 +0.3
2,930,929 + AO353_13220 0.85 +0.0
2,930,929 + AO353_13220 0.85 -1.6
2,930,929 + AO353_13220 0.85 +0.7
2,930,930 - AO353_13220 0.85 -0.5
2,930,930 - AO353_13220 0.85 -0.7
2,930,930 - AO353_13220 0.85 -0.3
2,930,930 - AO353_13220 0.85 -2.2
2,930,933 + AO353_13220 0.86 -2.1
2,930,934 - AO353_13220 0.86 +0.2
2,930,934 - AO353_13220 0.86 -1.9
2,930,949 + AO353_13220 0.87 -0.0
2,930,949 + AO353_13220 0.87 -1.1
2,930,949 + AO353_13220 0.87 -1.5
2,930,950 - AO353_13220 0.88 -1.2
2,931,059 - +0.5
2,931,066 - +0.0
2,931,160 + AO353_13225 0.18 -1.2
2,931,161 - AO353_13225 0.18 -1.9
2,931,161 - AO353_13225 0.18 +1.5
2,931,161 - AO353_13225 0.18 -1.0
2,931,164 + AO353_13225 0.19 -1.3
2,931,164 + AO353_13225 0.19 -0.7
2,931,165 - AO353_13225 0.19 -0.7
2,931,313 + AO353_13225 0.52 -2.2
2,931,313 + AO353_13225 0.52 -2.4
2,931,450 + AO353_13225 0.83 -2.6
2,931,501 + -2.1
2,931,524 + -2.1
2,931,524 + -0.0
2,931,531 + -0.7
2,931,531 + -0.9
2,931,531 + -1.8
2,931,531 + -1.1
2,931,531 + -1.6
2,931,587 + -2.7
2,931,587 + -1.4
2,931,628 + -0.4

Or see this region's nucleotide sequence