Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00575

Experiment: Cobalt chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00570 and AO353_00575 are separated by 101 nucleotidesAO353_00575 and AO353_00580 are separated by 204 nucleotidesAO353_00580 and AO353_00585 are separated by 98 nucleotides AO353_00570: AO353_00570 - CAAX protease, at 121,008 to 121,799 _00570 AO353_00575: AO353_00575 - chemotaxis protein, at 121,901 to 123,466 _00575 AO353_00580: AO353_00580 - alpha/beta hydrolase, at 123,671 to 124,348 _00580 AO353_00585: AO353_00585 - cytochrome C oxidase Cbb3, at 124,447 to 125,871 _00585 Position (kb) 121 122 123 124Strain fitness (log2 ratio) -2 -1 0 1 2at 120.947 kb on - strandat 121.029 kb on + strandat 121.029 kb on + strandat 121.029 kb on + strandat 121.029 kb on + strandat 121.030 kb on - strandat 121.030 kb on - strandat 121.053 kb on + strandat 121.071 kb on + strandat 121.071 kb on + strandat 121.071 kb on + strandat 121.071 kb on + strandat 121.071 kb on + strandat 121.071 kb on + strandat 121.071 kb on + strandat 121.072 kb on - strandat 121.115 kb on - strand, within AO353_00570at 121.231 kb on - strand, within AO353_00570at 121.231 kb on - strand, within AO353_00570at 121.231 kb on - strand, within AO353_00570at 121.231 kb on - strand, within AO353_00570at 121.231 kb on - strand, within AO353_00570at 121.290 kb on + strand, within AO353_00570at 121.290 kb on + strand, within AO353_00570at 121.290 kb on + strand, within AO353_00570at 121.290 kb on + strand, within AO353_00570at 121.291 kb on - strand, within AO353_00570at 121.291 kb on - strand, within AO353_00570at 121.380 kb on + strand, within AO353_00570at 121.380 kb on + strand, within AO353_00570at 121.380 kb on + strand, within AO353_00570at 121.380 kb on + strand, within AO353_00570at 121.380 kb on + strand, within AO353_00570at 121.380 kb on + strand, within AO353_00570at 121.381 kb on - strand, within AO353_00570at 121.381 kb on - strand, within AO353_00570at 121.381 kb on - strand, within AO353_00570at 121.381 kb on - strand, within AO353_00570at 121.381 kb on - strand, within AO353_00570at 121.446 kb on - strand, within AO353_00570at 121.446 kb on - strand, within AO353_00570at 121.446 kb on - strand, within AO353_00570at 121.546 kb on - strand, within AO353_00570at 121.546 kb on - strand, within AO353_00570at 121.663 kb on + strand, within AO353_00570at 121.664 kb on - strand, within AO353_00570at 121.776 kb on - strandat 121.776 kb on - strandat 121.776 kb on - strandat 121.780 kb on - strandat 121.805 kb on + strandat 121.805 kb on + strandat 121.806 kb on - strandat 121.806 kb on - strandat 121.806 kb on - strandat 121.806 kb on - strandat 121.850 kb on + strandat 121.851 kb on - strandat 121.851 kb on - strandat 121.906 kb on + strandat 121.906 kb on + strandat 121.907 kb on - strandat 121.907 kb on - strandat 121.907 kb on - strandat 121.907 kb on - strandat 121.907 kb on - strandat 121.907 kb on - strandat 121.907 kb on - strandat 121.907 kb on - strandat 121.909 kb on + strandat 121.910 kb on - strandat 121.921 kb on + strandat 121.921 kb on + strandat 121.921 kb on + strandat 121.921 kb on + strandat 121.921 kb on + strandat 121.921 kb on + strandat 121.922 kb on - strandat 121.922 kb on - strandat 121.922 kb on - strandat 121.922 kb on - strandat 121.922 kb on - strandat 121.994 kb on + strandat 121.994 kb on + strandat 121.994 kb on + strandat 121.994 kb on + strandat 121.994 kb on + strandat 121.995 kb on - strandat 121.995 kb on - strandat 121.995 kb on - strandat 121.995 kb on - strandat 122.177 kb on + strand, within AO353_00575at 122.178 kb on - strand, within AO353_00575at 122.192 kb on + strand, within AO353_00575at 122.193 kb on - strand, within AO353_00575at 122.193 kb on - strand, within AO353_00575at 122.193 kb on - strand, within AO353_00575at 122.206 kb on - strand, within AO353_00575at 122.288 kb on + strand, within AO353_00575at 122.288 kb on + strand, within AO353_00575at 122.288 kb on + strand, within AO353_00575at 122.289 kb on - strand, within AO353_00575at 122.289 kb on - strand, within AO353_00575at 122.289 kb on - strand, within AO353_00575at 122.289 kb on - strand, within AO353_00575at 122.552 kb on + strand, within AO353_00575at 122.552 kb on + strand, within AO353_00575at 122.552 kb on + strand, within AO353_00575at 122.552 kb on + strand, within AO353_00575at 122.552 kb on + strand, within AO353_00575at 122.553 kb on - strand, within AO353_00575at 122.553 kb on - strand, within AO353_00575at 123.078 kb on + strand, within AO353_00575at 123.078 kb on + strand, within AO353_00575at 123.079 kb on - strand, within AO353_00575at 123.079 kb on - strand, within AO353_00575at 123.079 kb on - strand, within AO353_00575at 123.079 kb on - strand, within AO353_00575at 123.079 kb on - strand, within AO353_00575at 123.244 kb on + strand, within AO353_00575at 123.318 kb on + strandat 123.399 kb on + strandat 123.430 kb on + strandat 123.437 kb on + strandat 123.438 kb on - strandat 123.438 kb on - strandat 123.447 kb on + strandat 123.481 kb on + strandat 123.481 kb on + strandat 123.481 kb on + strandat 123.481 kb on + strandat 123.482 kb on - strandat 123.516 kb on + strandat 123.517 kb on - strandat 123.543 kb on + strandat 123.544 kb on - strandat 123.576 kb on + strandat 123.576 kb on + strandat 123.576 kb on + strandat 123.576 kb on + strandat 123.577 kb on - strandat 123.582 kb on + strandat 123.582 kb on + strandat 123.582 kb on + strandat 123.582 kb on + strandat 123.582 kb on + strandat 123.582 kb on + strandat 123.582 kb on + strandat 123.582 kb on + strandat 123.582 kb on + strandat 123.582 kb on + strandat 123.582 kb on + strandat 123.582 kb on + strandat 123.582 kb on + strandat 123.582 kb on + strandat 123.582 kb on + strandat 123.582 kb on + strandat 123.582 kb on + strandat 123.582 kb on + strandat 123.582 kb on + strandat 123.582 kb on + strandat 123.582 kb on + strandat 123.582 kb on + strandat 123.582 kb on + strandat 123.583 kb on - strandat 123.583 kb on - strandat 123.583 kb on - strandat 123.583 kb on - strandat 123.583 kb on - strandat 123.583 kb on - strandat 123.583 kb on - strandat 123.583 kb on - strandat 123.583 kb on - strandat 123.583 kb on - strandat 123.583 kb on - strandat 123.583 kb on - strandat 123.583 kb on - strandat 123.583 kb on - strandat 123.583 kb on - strandat 123.583 kb on - strandat 123.583 kb on - strandat 123.583 kb on - strandat 123.583 kb on - strandat 123.583 kb on - strandat 123.583 kb on - strandat 123.583 kb on - strandat 123.586 kb on + strandat 123.586 kb on + strandat 123.586 kb on + strandat 123.586 kb on + strandat 123.586 kb on + strandat 123.586 kb on + strandat 123.586 kb on + strandat 123.586 kb on + strandat 123.586 kb on + strandat 123.586 kb on + strandat 123.587 kb on - strandat 123.587 kb on - strandat 123.587 kb on - strandat 123.587 kb on - strandat 123.587 kb on - strandat 123.587 kb on - strandat 123.587 kb on - strandat 123.587 kb on - strandat 123.587 kb on - strandat 123.587 kb on - strandat 123.587 kb on - strandat 123.587 kb on - strandat 123.587 kb on - strandat 123.614 kb on - strandat 123.727 kb on + strandat 123.727 kb on + strandat 123.728 kb on - strandat 123.728 kb on - strandat 123.728 kb on - strandat 123.805 kb on + strand, within AO353_00580at 123.805 kb on + strand, within AO353_00580at 123.805 kb on + strand, within AO353_00580at 123.805 kb on + strand, within AO353_00580at 123.805 kb on + strand, within AO353_00580at 123.805 kb on + strand, within AO353_00580at 123.805 kb on + strand, within AO353_00580at 123.805 kb on + strand, within AO353_00580at 123.805 kb on + strand, within AO353_00580at 123.805 kb on + strand, within AO353_00580at 123.805 kb on + strand, within AO353_00580at 123.805 kb on + strand, within AO353_00580at 123.806 kb on - strand, within AO353_00580at 123.806 kb on - strand, within AO353_00580at 123.806 kb on - strand, within AO353_00580at 123.806 kb on - strand, within AO353_00580at 123.806 kb on - strand, within AO353_00580at 123.806 kb on - strand, within AO353_00580at 123.806 kb on - strand, within AO353_00580at 123.806 kb on - strand, within AO353_00580at 123.806 kb on - strand, within AO353_00580at 123.806 kb on - strand, within AO353_00580at 123.806 kb on - strandat 123.806 kb on - strand, within AO353_00580at 123.806 kb on - strand, within AO353_00580at 123.806 kb on - strand, within AO353_00580at 123.806 kb on - strand, within AO353_00580at 123.806 kb on - strand, within AO353_00580at 123.806 kb on - strand, within AO353_00580at 123.806 kb on - strand, within AO353_00580at 123.806 kb on - strand, within AO353_00580at 123.807 kb on + strand, within AO353_00580at 123.808 kb on - strand, within AO353_00580at 123.924 kb on + strand, within AO353_00580at 124.053 kb on + strand, within AO353_00580at 124.053 kb on + strand, within AO353_00580at 124.053 kb on + strand, within AO353_00580at 124.053 kb on + strand, within AO353_00580at 124.053 kb on + strand, within AO353_00580at 124.053 kb on + strand, within AO353_00580at 124.054 kb on - strand, within AO353_00580at 124.054 kb on - strand, within AO353_00580at 124.054 kb on - strand, within AO353_00580at 124.054 kb on - strand, within AO353_00580at 124.054 kb on - strand, within AO353_00580at 124.363 kb on + strandat 124.363 kb on + strandat 124.364 kb on - strandat 124.372 kb on + strandat 124.372 kb on + strandat 124.372 kb on + strandat 124.373 kb on - strandat 124.373 kb on - strandat 124.373 kb on - strandat 124.373 kb on - strandat 124.373 kb on - strandat 124.374 kb on + strandat 124.374 kb on + strandat 124.374 kb on + strandat 124.375 kb on - strandat 124.375 kb on - strandat 124.375 kb on - strandat 124.375 kb on - strandat 124.460 kb on + strandat 124.460 kb on + strandat 124.460 kb on + strandat 124.460 kb on + strandat 124.460 kb on + strandat 124.460 kb on + strandat 124.461 kb on - strandat 124.461 kb on - strandat 124.461 kb on - strandat 124.461 kb on - strandat 124.461 kb on - strandat 124.461 kb on - strandat 124.464 kb on + strandat 124.464 kb on + strandat 124.464 kb on + strandat 124.465 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM
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120,947 - +0.9
121,029 + -0.2
121,029 + -1.3
121,029 + +0.5
121,029 + -0.5
121,030 - -1.4
121,030 - +0.4
121,053 + -0.1
121,071 + -0.9
121,071 + +0.1
121,071 + +0.4
121,071 + +0.2
121,071 + +0.7
121,071 + +0.5
121,071 + -0.6
121,072 - -1.0
121,115 - AO353_00570 0.14 +0.4
121,231 - AO353_00570 0.28 -0.1
121,231 - AO353_00570 0.28 -1.1
121,231 - AO353_00570 0.28 +0.1
121,231 - AO353_00570 0.28 -0.1
121,231 - AO353_00570 0.28 +0.5
121,290 + AO353_00570 0.36 -1.7
121,290 + AO353_00570 0.36 -0.2
121,290 + AO353_00570 0.36 +0.6
121,290 + AO353_00570 0.36 -1.2
121,291 - AO353_00570 0.36 -1.5
121,291 - AO353_00570 0.36 -1.6
121,380 + AO353_00570 0.47 -0.4
121,380 + AO353_00570 0.47 +0.1
121,380 + AO353_00570 0.47 -0.4
121,380 + AO353_00570 0.47 +0.4
121,380 + AO353_00570 0.47 +1.2
121,380 + AO353_00570 0.47 +0.6
121,381 - AO353_00570 0.47 +0.4
121,381 - AO353_00570 0.47 +0.0
121,381 - AO353_00570 0.47 +0.5
121,381 - AO353_00570 0.47 +0.6
121,381 - AO353_00570 0.47 +0.7
121,446 - AO353_00570 0.55 +0.7
121,446 - AO353_00570 0.55 -0.9
121,446 - AO353_00570 0.55 +0.9
121,546 - AO353_00570 0.68 +0.6
121,546 - AO353_00570 0.68 +0.0
121,663 + AO353_00570 0.83 +0.3
121,664 - AO353_00570 0.83 +0.7
121,776 - +0.9
121,776 - -0.9
121,776 - +0.2
121,780 - +1.2
121,805 + +0.4
121,805 + -0.1
121,806 - +0.8
121,806 - +0.6
121,806 - -0.5
121,806 - -0.6
121,850 + +1.4
121,851 - -0.5
121,851 - +1.7
121,906 + +1.0
121,906 + +0.2
121,907 - -0.1
121,907 - +1.3
121,907 - +1.1
121,907 - +0.3
121,907 - -1.3
121,907 - +1.0
121,907 - +0.2
121,907 - +0.8
121,909 + +2.5
121,910 - +0.6
121,921 + +0.8
121,921 + +0.0
121,921 + -0.1
121,921 + +2.6
121,921 + +1.4
121,921 + -1.6
121,922 - +1.2
121,922 - -0.1
121,922 - -2.3
121,922 - +1.9
121,922 - -0.6
121,994 + +0.1
121,994 + +2.0
121,994 + -1.1
121,994 + +0.4
121,994 + +0.2
121,995 - +0.9
121,995 - +1.6
121,995 - +1.7
121,995 - +0.9
122,177 + AO353_00575 0.18 -1.0
122,178 - AO353_00575 0.18 -0.4
122,192 + AO353_00575 0.19 -1.8
122,193 - AO353_00575 0.19 -1.4
122,193 - AO353_00575 0.19 -2.0
122,193 - AO353_00575 0.19 +0.1
122,206 - AO353_00575 0.19 -1.3
122,288 + AO353_00575 0.25 -0.6
122,288 + AO353_00575 0.25 -0.4
122,288 + AO353_00575 0.25 -0.4
122,289 - AO353_00575 0.25 -0.7
122,289 - AO353_00575 0.25 +1.1
122,289 - AO353_00575 0.25 +1.0
122,289 - AO353_00575 0.25 -0.2
122,552 + AO353_00575 0.42 -1.0
122,552 + AO353_00575 0.42 -1.4
122,552 + AO353_00575 0.42 -0.0
122,552 + AO353_00575 0.42 +1.3
122,552 + AO353_00575 0.42 -0.3
122,553 - AO353_00575 0.42 -1.4
122,553 - AO353_00575 0.42 -0.7
123,078 + AO353_00575 0.75 -0.4
123,078 + AO353_00575 0.75 -0.9
123,079 - AO353_00575 0.75 +0.6
123,079 - AO353_00575 0.75 -0.2
123,079 - AO353_00575 0.75 -1.2
123,079 - AO353_00575 0.75 -2.2
123,079 - AO353_00575 0.75 +1.0
123,244 + AO353_00575 0.86 +0.1
123,318 + +2.2
123,399 + -0.6
123,430 + +1.5
123,437 + -2.5
123,438 - -1.0
123,438 - +0.5
123,447 + +0.4
123,481 + -0.2
123,481 + -0.7
123,481 + +1.4
123,481 + -0.3
123,482 - -0.7
123,516 + -0.5
123,517 - +1.4
123,543 + -0.5
123,544 - +0.9
123,576 + -0.3
123,576 + -2.2
123,576 + +1.2
123,576 + +0.5
123,577 - -0.2
123,582 + +0.7
123,582 + -0.7
123,582 + +1.0
123,582 + -1.0
123,582 + +0.2
123,582 + +0.0
123,582 + +2.6
123,582 + +2.1
123,582 + -1.9
123,582 + -1.1
123,582 + -0.8
123,582 + -2.4
123,582 + -1.3
123,582 + -0.4
123,582 + +0.7
123,582 + +0.2
123,582 + +0.5
123,582 + -2.3
123,582 + +0.4
123,582 + -1.2
123,582 + -0.1
123,582 + +1.0
123,582 + +1.7
123,583 - -0.1
123,583 - -2.4
123,583 - -0.4
123,583 - +0.1
123,583 - -1.4
123,583 - -0.5
123,583 - +0.9
123,583 - +0.3
123,583 - -0.6
123,583 - +0.8
123,583 - -1.0
123,583 - -0.8
123,583 - -0.3
123,583 - +0.2
123,583 - +1.4
123,583 - +0.3
123,583 - +0.8
123,583 - +1.1
123,583 - +0.3
123,583 - +1.1
123,583 - +0.7
123,583 - +1.0
123,586 + -1.4
123,586 + +0.1
123,586 + -0.9
123,586 + -0.7
123,586 + -0.6
123,586 + -1.0
123,586 + +1.9
123,586 + +0.6
123,586 + -0.0
123,586 + +1.0
123,587 - +0.1
123,587 - +0.8
123,587 - -1.3
123,587 - -0.1
123,587 - +0.9
123,587 - +1.1
123,587 - -0.4
123,587 - +0.6
123,587 - -0.1
123,587 - +0.7
123,587 - +0.5
123,587 - +0.7
123,587 - -0.2
123,614 - +0.9
123,727 + +0.6
123,727 + +1.1
123,728 - -0.9
123,728 - +1.4
123,728 - +0.7
123,805 + AO353_00580 0.20 +0.1
123,805 + AO353_00580 0.20 -0.5
123,805 + AO353_00580 0.20 +0.1
123,805 + AO353_00580 0.20 -0.5
123,805 + AO353_00580 0.20 +1.1
123,805 + AO353_00580 0.20 +0.7
123,805 + AO353_00580 0.20 -0.1
123,805 + AO353_00580 0.20 +0.3
123,805 + AO353_00580 0.20 +1.5
123,805 + AO353_00580 0.20 -0.4
123,805 + AO353_00580 0.20 -1.8
123,805 + AO353_00580 0.20 -2.1
123,806 - AO353_00580 0.20 +0.9
123,806 - AO353_00580 0.20 +0.1
123,806 - AO353_00580 0.20 -0.4
123,806 - AO353_00580 0.20 +0.2
123,806 - AO353_00580 0.20 +0.2
123,806 - AO353_00580 0.20 +1.5
123,806 - AO353_00580 0.20 -2.1
123,806 - AO353_00580 0.20 -0.8
123,806 - AO353_00580 0.20 +0.3
123,806 - AO353_00580 0.20 -0.1
123,806 - +1.9
123,806 - AO353_00580 0.20 +0.8
123,806 - AO353_00580 0.20 +0.9
123,806 - AO353_00580 0.20 +1.6
123,806 - AO353_00580 0.20 -0.0
123,806 - AO353_00580 0.20 -2.0
123,806 - AO353_00580 0.20 -0.2
123,806 - AO353_00580 0.20 +2.6
123,806 - AO353_00580 0.20 -0.4
123,807 + AO353_00580 0.20 -0.3
123,808 - AO353_00580 0.20 +0.1
123,924 + AO353_00580 0.37 -1.7
124,053 + AO353_00580 0.56 +0.3
124,053 + AO353_00580 0.56 -2.0
124,053 + AO353_00580 0.56 -1.2
124,053 + AO353_00580 0.56 +0.4
124,053 + AO353_00580 0.56 -0.2
124,053 + AO353_00580 0.56 -1.2
124,054 - AO353_00580 0.56 +1.1
124,054 - AO353_00580 0.56 +1.9
124,054 - AO353_00580 0.56 -0.2
124,054 - AO353_00580 0.56 -1.3
124,054 - AO353_00580 0.56 +0.4
124,363 + -2.2
124,363 + -0.4
124,364 - -1.6
124,372 + +0.1
124,372 + +0.5
124,372 + +0.6
124,373 - -0.3
124,373 - -1.3
124,373 - -2.3
124,373 - -0.9
124,373 - -1.0
124,374 + -0.4
124,374 + +0.8
124,374 + +0.3
124,375 - +0.3
124,375 - +0.3
124,375 - +0.1
124,375 - +0.3
124,460 + -0.3
124,460 + -0.7
124,460 + +0.5
124,460 + -1.7
124,460 + -0.3
124,460 + +0.9
124,461 - -0.4
124,461 - -1.8
124,461 - -0.6
124,461 - +0.2
124,461 - -1.5
124,461 - +1.1
124,464 + +0.1
124,464 + -0.3
124,464 + -1.1
124,465 - +0.3

Or see this region's nucleotide sequence