Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4753

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT4752 and BT4753 are separated by 428 nucleotidesBT4753 and BT4754 overlap by 1 nucleotides BT4752: BT4752 - conserved hypothetical protein (NCBI ptt file), at 6,236,032 to 6,237,327 BT4752 BT4753: BT4753 - hypothetical protein (NCBI ptt file), at 6,237,756 to 6,237,974 BT4753 BT4754: BT4754 - putative cytosine-specific methyltransferase (NCBI ptt file), at 6,237,974 to 6,239,182 BT4754 Position (kb) 6237 6238Strain fitness (log2 ratio) -1 0 1at 6236.805 kb on + strand, within BT4752at 6237.062 kb on - strand, within BT4752at 6237.277 kb on + strandat 6237.347 kb on + strandat 6237.464 kb on + strandat 6237.465 kb on - strandat 6237.608 kb on - strandat 6237.611 kb on - strandat 6237.751 kb on + strandat 6237.761 kb on + strandat 6237.774 kb on + strandat 6237.874 kb on + strand, within BT4753at 6237.895 kb on + strand, within BT4753at 6237.961 kb on + strandat 6237.990 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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6,236,805 + BT4752 0.60 +0.6
6,237,062 - BT4752 0.79 +0.1
6,237,277 + +0.2
6,237,347 + -1.5
6,237,464 + +0.4
6,237,465 - -0.3
6,237,608 - +0.4
6,237,611 - -0.5
6,237,751 + +0.4
6,237,761 + -0.6
6,237,774 + +1.2
6,237,874 + BT4753 0.54 -0.3
6,237,895 + BT4753 0.63 -1.4
6,237,961 + +1.1
6,237,990 - -0.1

Or see this region's nucleotide sequence