Experiment: Beta-Lactose 20 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09120 and HMPREF1058_RS09115 are separated by 251 nucleotides HMPREF1058_RS09115 and HMPREF1058_RS09110 are separated by 895 nucleotides
HMPREF1058_RS09120: HMPREF1058_RS09120 - hypothetical protein, at 934,972 to 938,439
_RS09120
HMPREF1058_RS09115: HMPREF1058_RS09115 - alpha-galactosidase, at 938,691 to 940,847
_RS09115
HMPREF1058_RS09110: HMPREF1058_RS09110 - RNA polymerase sigma-70 factor, at 941,743 to 942,333
_RS09110
Position (kb) 938
939
940
941 Strain fitness (log2 ratio) -2
-1
0
1
2 at 937.745 kb on - strand, within HMPREF1058_RS09120 at 937.792 kb on + strand, within HMPREF1058_RS09120 at 937.850 kb on + strand, within HMPREF1058_RS09120 at 937.850 kb on + strand, within HMPREF1058_RS09120 at 937.894 kb on + strand, within HMPREF1058_RS09120 at 937.895 kb on - strand, within HMPREF1058_RS09120 at 937.895 kb on - strand, within HMPREF1058_RS09120 at 937.914 kb on + strand, within HMPREF1058_RS09120 at 937.919 kb on + strand, within HMPREF1058_RS09120 at 937.986 kb on - strand, within HMPREF1058_RS09120 at 938.053 kb on + strand, within HMPREF1058_RS09120 at 938.054 kb on - strand, within HMPREF1058_RS09120 at 938.097 kb on + strand at 938.137 kb on + strand at 938.167 kb on - strand at 938.351 kb on - strand at 938.379 kb on + strand at 938.423 kb on - strand at 938.425 kb on + strand at 938.487 kb on - strand at 938.574 kb on + strand at 938.612 kb on - strand at 938.625 kb on + strand at 938.626 kb on - strand at 938.627 kb on + strand at 938.627 kb on + strand at 938.627 kb on + strand at 938.628 kb on - strand at 938.732 kb on - strand at 938.867 kb on + strand at 938.898 kb on + strand at 938.942 kb on + strand, within HMPREF1058_RS09115 at 938.943 kb on - strand, within HMPREF1058_RS09115 at 938.944 kb on + strand, within HMPREF1058_RS09115 at 938.944 kb on + strand, within HMPREF1058_RS09115 at 938.945 kb on - strand, within HMPREF1058_RS09115 at 938.986 kb on + strand, within HMPREF1058_RS09115 at 938.987 kb on - strand, within HMPREF1058_RS09115 at 939.039 kb on - strand, within HMPREF1058_RS09115 at 939.078 kb on + strand, within HMPREF1058_RS09115 at 939.078 kb on + strand, within HMPREF1058_RS09115 at 939.158 kb on + strand, within HMPREF1058_RS09115 at 939.163 kb on - strand, within HMPREF1058_RS09115 at 939.163 kb on - strand, within HMPREF1058_RS09115 at 939.388 kb on + strand, within HMPREF1058_RS09115 at 939.429 kb on - strand, within HMPREF1058_RS09115 at 939.431 kb on + strand, within HMPREF1058_RS09115 at 939.432 kb on - strand, within HMPREF1058_RS09115 at 939.461 kb on + strand, within HMPREF1058_RS09115 at 939.528 kb on - strand, within HMPREF1058_RS09115 at 939.588 kb on + strand, within HMPREF1058_RS09115 at 939.617 kb on + strand, within HMPREF1058_RS09115 at 939.649 kb on - strand, within HMPREF1058_RS09115 at 939.713 kb on + strand, within HMPREF1058_RS09115 at 939.750 kb on + strand, within HMPREF1058_RS09115 at 939.857 kb on - strand, within HMPREF1058_RS09115 at 939.920 kb on + strand, within HMPREF1058_RS09115 at 939.960 kb on + strand, within HMPREF1058_RS09115 at 939.960 kb on + strand, within HMPREF1058_RS09115 at 940.012 kb on - strand, within HMPREF1058_RS09115 at 940.092 kb on - strand, within HMPREF1058_RS09115 at 940.101 kb on + strand, within HMPREF1058_RS09115 at 940.101 kb on + strand, within HMPREF1058_RS09115 at 940.102 kb on - strand, within HMPREF1058_RS09115 at 940.110 kb on + strand, within HMPREF1058_RS09115 at 940.135 kb on + strand, within HMPREF1058_RS09115 at 940.135 kb on + strand, within HMPREF1058_RS09115 at 940.136 kb on - strand, within HMPREF1058_RS09115 at 940.137 kb on + strand, within HMPREF1058_RS09115 at 940.140 kb on - strand, within HMPREF1058_RS09115 at 940.140 kb on - strand, within HMPREF1058_RS09115 at 940.161 kb on + strand, within HMPREF1058_RS09115 at 940.161 kb on + strand, within HMPREF1058_RS09115 at 940.161 kb on + strand, within HMPREF1058_RS09115 at 940.162 kb on - strand, within HMPREF1058_RS09115 at 940.162 kb on - strand, within HMPREF1058_RS09115 at 940.263 kb on - strand, within HMPREF1058_RS09115 at 940.263 kb on - strand, within HMPREF1058_RS09115 at 940.284 kb on - strand, within HMPREF1058_RS09115 at 940.307 kb on - strand, within HMPREF1058_RS09115 at 940.365 kb on - strand, within HMPREF1058_RS09115 at 940.383 kb on - strand, within HMPREF1058_RS09115 at 940.413 kb on - strand, within HMPREF1058_RS09115 at 940.497 kb on + strand, within HMPREF1058_RS09115 at 940.536 kb on + strand, within HMPREF1058_RS09115 at 940.563 kb on - strand, within HMPREF1058_RS09115 at 940.577 kb on + strand, within HMPREF1058_RS09115 at 940.577 kb on + strand, within HMPREF1058_RS09115 at 940.577 kb on + strand, within HMPREF1058_RS09115 at 940.577 kb on + strand, within HMPREF1058_RS09115 at 940.577 kb on + strand, within HMPREF1058_RS09115 at 940.577 kb on + strand, within HMPREF1058_RS09115 at 940.577 kb on + strand, within HMPREF1058_RS09115 at 940.582 kb on - strand, within HMPREF1058_RS09115 at 940.799 kb on + strand at 940.800 kb on - strand at 940.800 kb on - strand at 940.802 kb on + strand at 940.835 kb on - strand at 940.838 kb on - strand at 940.862 kb on + strand at 940.866 kb on + strand at 940.928 kb on + strand at 940.940 kb on - strand at 940.965 kb on + strand at 941.009 kb on - strand at 941.009 kb on - strand at 941.010 kb on + strand at 941.011 kb on - strand at 941.012 kb on + strand at 941.012 kb on + strand at 941.012 kb on + strand at 941.013 kb on - strand at 941.018 kb on - strand at 941.033 kb on - strand at 941.034 kb on + strand at 941.124 kb on - strand at 941.166 kb on - strand at 941.182 kb on - strand at 941.183 kb on + strand at 941.185 kb on + strand at 941.186 kb on - strand at 941.186 kb on - strand at 941.189 kb on + strand at 941.190 kb on - strand at 941.190 kb on - strand at 941.190 kb on - strand at 941.190 kb on - strand at 941.192 kb on - strand at 941.194 kb on - strand at 941.195 kb on + strand at 941.196 kb on - strand at 941.196 kb on - strand at 941.290 kb on + strand at 941.290 kb on + strand at 941.291 kb on - strand at 941.324 kb on + strand at 941.324 kb on + strand at 941.338 kb on + strand at 941.339 kb on - strand at 941.459 kb on - strand at 941.547 kb on - strand at 941.556 kb on - strand at 941.558 kb on - strand at 941.560 kb on - strand at 941.560 kb on - strand at 941.571 kb on - strand at 941.600 kb on + strand at 941.617 kb on - strand at 941.690 kb on - strand at 941.692 kb on + strand at 941.739 kb on + strand at 941.739 kb on + strand at 941.740 kb on - strand at 941.740 kb on - strand at 941.845 kb on + strand, within HMPREF1058_RS09110
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 20 mM (C) remove 937,745 - HMPREF1058_RS09120 0.80 -0.1 937,792 + HMPREF1058_RS09120 0.81 -1.1 937,850 + HMPREF1058_RS09120 0.83 -0.1 937,850 + HMPREF1058_RS09120 0.83 -0.3 937,894 + HMPREF1058_RS09120 0.84 +0.1 937,895 - HMPREF1058_RS09120 0.84 -0.7 937,895 - HMPREF1058_RS09120 0.84 +0.1 937,914 + HMPREF1058_RS09120 0.85 -2.0 937,919 + HMPREF1058_RS09120 0.85 -0.2 937,986 - HMPREF1058_RS09120 0.87 +0.0 938,053 + HMPREF1058_RS09120 0.89 -0.4 938,054 - HMPREF1058_RS09120 0.89 +0.3 938,097 + -1.1 938,137 + +0.7 938,167 - +1.1 938,351 - +0.1 938,379 + +0.7 938,423 - -0.2 938,425 + +0.2 938,487 - -0.4 938,574 + +0.3 938,612 - +0.1 938,625 + +0.2 938,626 - -0.3 938,627 + -0.7 938,627 + +0.2 938,627 + +0.4 938,628 - +0.5 938,732 - -0.5 938,867 + -1.0 938,898 + +2.1 938,942 + HMPREF1058_RS09115 0.12 -0.4 938,943 - HMPREF1058_RS09115 0.12 -1.6 938,944 + HMPREF1058_RS09115 0.12 -1.3 938,944 + HMPREF1058_RS09115 0.12 +0.2 938,945 - HMPREF1058_RS09115 0.12 +0.1 938,986 + HMPREF1058_RS09115 0.14 +0.7 938,987 - HMPREF1058_RS09115 0.14 +1.8 939,039 - HMPREF1058_RS09115 0.16 +0.2 939,078 + HMPREF1058_RS09115 0.18 +0.4 939,078 + HMPREF1058_RS09115 0.18 -0.3 939,158 + HMPREF1058_RS09115 0.22 -0.7 939,163 - HMPREF1058_RS09115 0.22 -0.2 939,163 - HMPREF1058_RS09115 0.22 +0.3 939,388 + HMPREF1058_RS09115 0.32 +0.0 939,429 - HMPREF1058_RS09115 0.34 +0.3 939,431 + HMPREF1058_RS09115 0.34 -1.5 939,432 - HMPREF1058_RS09115 0.34 +1.6 939,461 + HMPREF1058_RS09115 0.36 +0.9 939,528 - HMPREF1058_RS09115 0.39 +1.5 939,588 + HMPREF1058_RS09115 0.42 -0.1 939,617 + HMPREF1058_RS09115 0.43 -0.7 939,649 - HMPREF1058_RS09115 0.44 -0.4 939,713 + HMPREF1058_RS09115 0.47 -0.2 939,750 + HMPREF1058_RS09115 0.49 +0.6 939,857 - HMPREF1058_RS09115 0.54 -0.4 939,920 + HMPREF1058_RS09115 0.57 +0.2 939,960 + HMPREF1058_RS09115 0.59 -0.1 939,960 + HMPREF1058_RS09115 0.59 +0.4 940,012 - HMPREF1058_RS09115 0.61 -0.0 940,092 - HMPREF1058_RS09115 0.65 -0.1 940,101 + HMPREF1058_RS09115 0.65 +0.0 940,101 + HMPREF1058_RS09115 0.65 +0.2 940,102 - HMPREF1058_RS09115 0.65 -0.4 940,110 + HMPREF1058_RS09115 0.66 -0.1 940,135 + HMPREF1058_RS09115 0.67 +1.7 940,135 + HMPREF1058_RS09115 0.67 -0.7 940,136 - HMPREF1058_RS09115 0.67 +1.2 940,137 + HMPREF1058_RS09115 0.67 -0.6 940,140 - HMPREF1058_RS09115 0.67 +0.4 940,140 - HMPREF1058_RS09115 0.67 -0.4 940,161 + HMPREF1058_RS09115 0.68 +0.6 940,161 + HMPREF1058_RS09115 0.68 +0.2 940,161 + HMPREF1058_RS09115 0.68 -0.2 940,162 - HMPREF1058_RS09115 0.68 +0.1 940,162 - HMPREF1058_RS09115 0.68 -0.2 940,263 - HMPREF1058_RS09115 0.73 -0.3 940,263 - HMPREF1058_RS09115 0.73 -0.2 940,284 - HMPREF1058_RS09115 0.74 +1.9 940,307 - HMPREF1058_RS09115 0.75 +0.1 940,365 - HMPREF1058_RS09115 0.78 +0.2 940,383 - HMPREF1058_RS09115 0.78 +0.3 940,413 - HMPREF1058_RS09115 0.80 -1.7 940,497 + HMPREF1058_RS09115 0.84 +0.9 940,536 + HMPREF1058_RS09115 0.86 +0.1 940,563 - HMPREF1058_RS09115 0.87 +0.5 940,577 + HMPREF1058_RS09115 0.87 -0.7 940,577 + HMPREF1058_RS09115 0.87 -0.3 940,577 + HMPREF1058_RS09115 0.87 +0.3 940,577 + HMPREF1058_RS09115 0.87 +0.0 940,577 + HMPREF1058_RS09115 0.87 -0.5 940,577 + HMPREF1058_RS09115 0.87 +0.2 940,577 + HMPREF1058_RS09115 0.87 +0.2 940,582 - HMPREF1058_RS09115 0.88 +0.5 940,799 + +0.3 940,800 - -0.5 940,800 - +1.5 940,802 + +0.5 940,835 - -0.4 940,838 - -0.2 940,862 + -0.0 940,866 + -0.7 940,928 + -0.4 940,940 - -0.5 940,965 + -0.7 941,009 - -0.4 941,009 - -1.6 941,010 + +0.2 941,011 - -0.9 941,012 + +0.1 941,012 + +0.1 941,012 + +0.3 941,013 - -0.0 941,018 - +0.3 941,033 - -0.2 941,034 + +1.3 941,124 - -0.7 941,166 - -0.9 941,182 - +0.5 941,183 + -0.9 941,185 + -0.7 941,186 - -0.3 941,186 - +0.2 941,189 + +0.0 941,190 - -0.8 941,190 - +0.2 941,190 - +0.3 941,190 - -0.4 941,192 - -0.3 941,194 - -0.5 941,195 + -0.7 941,196 - -0.4 941,196 - +0.2 941,290 + -0.6 941,290 + +0.3 941,291 - +2.1 941,324 + +1.2 941,324 + -1.4 941,338 + -1.3 941,339 - -0.1 941,459 - +0.5 941,547 - -0.5 941,556 - -0.5 941,558 - -0.3 941,560 - +0.9 941,560 - +0.8 941,571 - -0.2 941,600 + +0.5 941,617 - -0.3 941,690 - +0.3 941,692 + -0.1 941,739 + -0.2 941,739 + -0.6 941,740 - -0.1 941,740 - -0.3 941,845 + HMPREF1058_RS09110 0.17 +1.4
Or see this region's nucleotide sequence