Strain Fitness in Rahnella sp. WP5 around EX31_RS24035

Experiment: Ammonium chloride (N); RCH2 media; no shaking

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS24030 and EX31_RS24035 overlap by 4 nucleotidesEX31_RS24035 and EX31_RS24040 are separated by 27 nucleotides EX31_RS24030: EX31_RS24030 - alkylhydroperoxidase domain protein, at 573,953 to 575,062 _RS24030 EX31_RS24035: EX31_RS24035 - putative FMN-dependent luciferase-like monooxygenase, at 575,059 to 576,120 _RS24035 EX31_RS24040: EX31_RS24040 - ABC transporter ATP-binding protein, at 576,148 to 577,767 _RS24040 Position (kb) 575 576 577Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 574.258 kb on - strand, within EX31_RS24030at 574.261 kb on + strand, within EX31_RS24030at 574.261 kb on + strand, within EX31_RS24030at 574.261 kb on + strand, within EX31_RS24030at 574.261 kb on + strand, within EX31_RS24030at 574.261 kb on + strand, within EX31_RS24030at 574.261 kb on + strand, within EX31_RS24030at 574.332 kb on + strand, within EX31_RS24030at 574.332 kb on + strand, within EX31_RS24030at 574.333 kb on - strand, within EX31_RS24030at 574.333 kb on - strand, within EX31_RS24030at 574.376 kb on + strand, within EX31_RS24030at 574.402 kb on - strand, within EX31_RS24030at 574.414 kb on + strand, within EX31_RS24030at 574.511 kb on - strand, within EX31_RS24030at 574.583 kb on - strand, within EX31_RS24030at 574.583 kb on - strand, within EX31_RS24030at 574.623 kb on + strand, within EX31_RS24030at 574.844 kb on - strand, within EX31_RS24030at 574.947 kb on + strand, within EX31_RS24030at 575.052 kb on + strandat 575.052 kb on + strandat 575.052 kb on + strandat 575.053 kb on - strandat 575.053 kb on - strandat 575.056 kb on + strandat 575.057 kb on - strandat 575.057 kb on - strandat 575.057 kb on - strandat 575.062 kb on + strandat 575.062 kb on + strandat 575.062 kb on + strandat 575.179 kb on + strand, within EX31_RS24035at 575.180 kb on - strand, within EX31_RS24035at 575.180 kb on - strand, within EX31_RS24035at 575.184 kb on + strand, within EX31_RS24035at 575.184 kb on + strand, within EX31_RS24035at 575.185 kb on - strand, within EX31_RS24035at 575.185 kb on - strand, within EX31_RS24035at 575.185 kb on - strand, within EX31_RS24035at 575.186 kb on + strand, within EX31_RS24035at 575.187 kb on - strand, within EX31_RS24035at 575.315 kb on + strand, within EX31_RS24035at 575.315 kb on + strand, within EX31_RS24035at 575.315 kb on + strand, within EX31_RS24035at 575.315 kb on + strand, within EX31_RS24035at 575.315 kb on + strand, within EX31_RS24035at 575.315 kb on + strand, within EX31_RS24035at 575.315 kb on + strand, within EX31_RS24035at 575.315 kb on + strand, within EX31_RS24035at 575.315 kb on + strand, within EX31_RS24035at 575.316 kb on - strand, within EX31_RS24035at 575.316 kb on - strand, within EX31_RS24035at 575.316 kb on - strand, within EX31_RS24035at 575.381 kb on - strand, within EX31_RS24035at 575.461 kb on + strand, within EX31_RS24035at 575.486 kb on + strand, within EX31_RS24035at 575.660 kb on + strand, within EX31_RS24035at 575.662 kb on + strand, within EX31_RS24035at 575.662 kb on + strand, within EX31_RS24035at 575.663 kb on - strand, within EX31_RS24035at 575.831 kb on - strand, within EX31_RS24035at 575.890 kb on + strand, within EX31_RS24035at 575.891 kb on - strand, within EX31_RS24035at 576.120 kb on + strandat 576.120 kb on + strandat 576.121 kb on - strandat 576.121 kb on - strandat 576.121 kb on - strandat 576.121 kb on - strandat 576.121 kb on - strandat 576.149 kb on + strandat 576.149 kb on + strandat 576.150 kb on - strandat 576.174 kb on + strandat 576.175 kb on - strandat 576.175 kb on - strandat 576.197 kb on + strandat 576.263 kb on - strandat 576.263 kb on - strandat 576.315 kb on + strand, within EX31_RS24040at 576.315 kb on + strand, within EX31_RS24040at 576.315 kb on + strand, within EX31_RS24040at 576.323 kb on + strand, within EX31_RS24040at 576.323 kb on + strand, within EX31_RS24040at 576.323 kb on + strand, within EX31_RS24040at 576.323 kb on + strand, within EX31_RS24040at 576.324 kb on - strand, within EX31_RS24040at 576.324 kb on - strand, within EX31_RS24040at 576.324 kb on - strand, within EX31_RS24040at 576.324 kb on - strand, within EX31_RS24040at 576.324 kb on - strand, within EX31_RS24040at 576.324 kb on - strand, within EX31_RS24040at 576.324 kb on - strand, within EX31_RS24040at 576.346 kb on + strand, within EX31_RS24040at 576.347 kb on - strand, within EX31_RS24040at 576.358 kb on + strand, within EX31_RS24040at 576.358 kb on + strand, within EX31_RS24040at 576.359 kb on - strand, within EX31_RS24040at 576.433 kb on + strand, within EX31_RS24040at 576.506 kb on - strand, within EX31_RS24040at 576.506 kb on - strand, within EX31_RS24040at 576.654 kb on - strand, within EX31_RS24040at 576.654 kb on - strand, within EX31_RS24040at 576.655 kb on + strand, within EX31_RS24040at 576.656 kb on - strand, within EX31_RS24040at 576.656 kb on - strand, within EX31_RS24040at 576.656 kb on - strand, within EX31_RS24040at 576.656 kb on - strand, within EX31_RS24040at 576.656 kb on - strand, within EX31_RS24040at 576.656 kb on - strand, within EX31_RS24040at 576.712 kb on - strand, within EX31_RS24040at 576.730 kb on + strand, within EX31_RS24040at 576.730 kb on + strand, within EX31_RS24040at 576.731 kb on - strand, within EX31_RS24040at 576.731 kb on - strand, within EX31_RS24040at 576.731 kb on - strand, within EX31_RS24040at 577.001 kb on + strand, within EX31_RS24040at 577.001 kb on + strand, within EX31_RS24040

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); RCH2 media; no shaking
remove
574,258 - EX31_RS24030 0.27 +0.8
574,261 + EX31_RS24030 0.28 +2.1
574,261 + EX31_RS24030 0.28 +0.4
574,261 + EX31_RS24030 0.28 -1.2
574,261 + EX31_RS24030 0.28 +0.6
574,261 + EX31_RS24030 0.28 -1.3
574,261 + EX31_RS24030 0.28 -0.8
574,332 + EX31_RS24030 0.34 +0.3
574,332 + EX31_RS24030 0.34 +0.1
574,333 - EX31_RS24030 0.34 +0.4
574,333 - EX31_RS24030 0.34 -0.9
574,376 + EX31_RS24030 0.38 +0.7
574,402 - EX31_RS24030 0.40 -0.5
574,414 + EX31_RS24030 0.42 -1.4
574,511 - EX31_RS24030 0.50 +1.1
574,583 - EX31_RS24030 0.57 +0.5
574,583 - EX31_RS24030 0.57 -1.2
574,623 + EX31_RS24030 0.60 +0.0
574,844 - EX31_RS24030 0.80 +1.1
574,947 + EX31_RS24030 0.90 +0.2
575,052 + +1.1
575,052 + -1.3
575,052 + +3.1
575,053 - +0.3
575,053 - -0.6
575,056 + +0.6
575,057 - +0.5
575,057 - +0.6
575,057 - -0.9
575,062 + +0.5
575,062 + -0.9
575,062 + -0.7
575,179 + EX31_RS24035 0.11 -0.3
575,180 - EX31_RS24035 0.11 -0.7
575,180 - EX31_RS24035 0.11 -0.4
575,184 + EX31_RS24035 0.12 +0.7
575,184 + EX31_RS24035 0.12 +2.0
575,185 - EX31_RS24035 0.12 +0.3
575,185 - EX31_RS24035 0.12 +1.5
575,185 - EX31_RS24035 0.12 +0.3
575,186 + EX31_RS24035 0.12 +0.3
575,187 - EX31_RS24035 0.12 -2.6
575,315 + EX31_RS24035 0.24 -0.4
575,315 + EX31_RS24035 0.24 +0.6
575,315 + EX31_RS24035 0.24 -0.7
575,315 + EX31_RS24035 0.24 +0.9
575,315 + EX31_RS24035 0.24 +1.0
575,315 + EX31_RS24035 0.24 -1.2
575,315 + EX31_RS24035 0.24 +0.3
575,315 + EX31_RS24035 0.24 -0.9
575,315 + EX31_RS24035 0.24 +1.6
575,316 - EX31_RS24035 0.24 -0.3
575,316 - EX31_RS24035 0.24 -0.1
575,316 - EX31_RS24035 0.24 +0.6
575,381 - EX31_RS24035 0.30 -0.3
575,461 + EX31_RS24035 0.38 +0.6
575,486 + EX31_RS24035 0.40 +1.2
575,660 + EX31_RS24035 0.57 +1.2
575,662 + EX31_RS24035 0.57 +1.1
575,662 + EX31_RS24035 0.57 +0.2
575,663 - EX31_RS24035 0.57 -0.9
575,831 - EX31_RS24035 0.73 +0.4
575,890 + EX31_RS24035 0.78 +0.7
575,891 - EX31_RS24035 0.78 -0.5
576,120 + -0.7
576,120 + +1.1
576,121 - +4.4
576,121 - -0.6
576,121 - +0.3
576,121 - +1.1
576,121 - +0.0
576,149 + +0.3
576,149 + -0.5
576,150 - +0.5
576,174 + -0.3
576,175 - +0.0
576,175 - +0.5
576,197 + +0.8
576,263 - +0.2
576,263 - +1.3
576,315 + EX31_RS24040 0.10 +0.1
576,315 + EX31_RS24040 0.10 +0.7
576,315 + EX31_RS24040 0.10 -0.4
576,323 + EX31_RS24040 0.11 -0.9
576,323 + EX31_RS24040 0.11 -0.7
576,323 + EX31_RS24040 0.11 -0.4
576,323 + EX31_RS24040 0.11 +0.1
576,324 - EX31_RS24040 0.11 -0.2
576,324 - EX31_RS24040 0.11 -0.0
576,324 - EX31_RS24040 0.11 +1.3
576,324 - EX31_RS24040 0.11 +0.5
576,324 - EX31_RS24040 0.11 -0.1
576,324 - EX31_RS24040 0.11 -0.1
576,324 - EX31_RS24040 0.11 -1.0
576,346 + EX31_RS24040 0.12 +0.6
576,347 - EX31_RS24040 0.12 +0.5
576,358 + EX31_RS24040 0.13 +0.4
576,358 + EX31_RS24040 0.13 +0.5
576,359 - EX31_RS24040 0.13 -0.6
576,433 + EX31_RS24040 0.18 +0.8
576,506 - EX31_RS24040 0.22 +0.4
576,506 - EX31_RS24040 0.22 +0.5
576,654 - EX31_RS24040 0.31 +1.4
576,654 - EX31_RS24040 0.31 -1.5
576,655 + EX31_RS24040 0.31 -0.4
576,656 - EX31_RS24040 0.31 +0.7
576,656 - EX31_RS24040 0.31 +1.6
576,656 - EX31_RS24040 0.31 +1.1
576,656 - EX31_RS24040 0.31 -0.5
576,656 - EX31_RS24040 0.31 +1.9
576,656 - EX31_RS24040 0.31 -0.4
576,712 - EX31_RS24040 0.35 +0.1
576,730 + EX31_RS24040 0.36 +0.6
576,730 + EX31_RS24040 0.36 +0.9
576,731 - EX31_RS24040 0.36 +1.6
576,731 - EX31_RS24040 0.36 -0.5
576,731 - EX31_RS24040 0.36 +0.2
577,001 + EX31_RS24040 0.53 -0.5
577,001 + EX31_RS24040 0.53 -1.9

Or see this region's nucleotide sequence