Experiment: Ammonium chloride (N); RCH2 media; no shaking
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS02850 and EX31_RS02855 are separated by 544 nucleotides EX31_RS02855 and EX31_RS02860 are separated by 9 nucleotides
EX31_RS02850: EX31_RS02850 - divalent metal cation transporter, at 43,102 to 44,406
_RS02850
EX31_RS02855: EX31_RS02855 - methyl-accepting chemotaxis protein, at 44,951 to 46,558
_RS02855
EX31_RS02860: EX31_RS02860 - sugar ABC transporter substrate-binding protein, at 46,568 to 47,581
_RS02860
Position (kb) 44
45
46
47 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 44.184 kb on + strand, within EX31_RS02850 at 44.185 kb on - strand, within EX31_RS02850 at 44.185 kb on - strand, within EX31_RS02850 at 44.194 kb on - strand, within EX31_RS02850 at 44.194 kb on - strand, within EX31_RS02850 at 44.217 kb on - strand, within EX31_RS02850 at 44.217 kb on - strand, within EX31_RS02850 at 44.223 kb on - strand, within EX31_RS02850 at 44.242 kb on - strand, within EX31_RS02850 at 44.242 kb on - strand, within EX31_RS02850 at 44.269 kb on - strand, within EX31_RS02850 at 44.270 kb on + strand, within EX31_RS02850 at 44.271 kb on - strand, within EX31_RS02850 at 44.271 kb on - strand, within EX31_RS02850 at 44.407 kb on - strand at 44.407 kb on - strand at 44.407 kb on - strand at 44.466 kb on + strand at 44.467 kb on - strand at 44.468 kb on + strand at 44.468 kb on + strand at 44.469 kb on - strand at 44.469 kb on - strand at 44.469 kb on - strand at 44.469 kb on - strand at 44.469 kb on - strand at 44.478 kb on + strand at 44.478 kb on + strand at 44.479 kb on - strand at 44.479 kb on - strand at 44.480 kb on + strand at 44.481 kb on - strand at 44.488 kb on - strand at 44.499 kb on - strand at 44.499 kb on - strand at 44.510 kb on + strand at 44.510 kb on + strand at 44.510 kb on + strand at 44.511 kb on - strand at 44.511 kb on - strand at 44.511 kb on - strand at 44.513 kb on + strand at 44.513 kb on + strand at 44.514 kb on - strand at 44.522 kb on + strand at 44.522 kb on + strand at 44.522 kb on + strand at 44.522 kb on + strand at 44.523 kb on - strand at 44.523 kb on - strand at 44.523 kb on - strand at 44.523 kb on - strand at 44.561 kb on + strand at 44.740 kb on - strand at 44.771 kb on + strand at 44.771 kb on + strand at 44.771 kb on + strand at 44.772 kb on - strand at 44.772 kb on - strand at 44.772 kb on - strand at 44.772 kb on - strand at 44.772 kb on - strand at 44.772 kb on - strand at 44.779 kb on - strand at 44.779 kb on - strand at 44.871 kb on + strand at 44.872 kb on - strand at 44.905 kb on + strand at 44.906 kb on - strand at 44.906 kb on - strand at 44.960 kb on - strand at 44.968 kb on + strand at 44.973 kb on + strand at 44.973 kb on + strand at 44.973 kb on + strand at 44.973 kb on + strand at 44.974 kb on - strand at 44.986 kb on + strand at 44.986 kb on + strand at 44.986 kb on + strand at 44.987 kb on - strand at 44.987 kb on - strand at 45.027 kb on + strand at 45.028 kb on - strand at 45.028 kb on - strand at 45.040 kb on + strand at 45.041 kb on - strand at 45.051 kb on + strand at 45.052 kb on - strand at 45.084 kb on + strand at 45.084 kb on + strand at 45.084 kb on + strand at 45.084 kb on + strand at 45.085 kb on - strand at 45.085 kb on - strand at 45.085 kb on - strand at 45.085 kb on - strand at 45.085 kb on - strand at 45.120 kb on + strand, within EX31_RS02855 at 45.121 kb on - strand, within EX31_RS02855 at 45.155 kb on - strand, within EX31_RS02855 at 45.158 kb on + strand, within EX31_RS02855 at 45.202 kb on + strand, within EX31_RS02855 at 45.203 kb on - strand, within EX31_RS02855 at 45.292 kb on + strand, within EX31_RS02855 at 45.323 kb on - strand, within EX31_RS02855 at 45.323 kb on - strand, within EX31_RS02855 at 45.358 kb on + strand, within EX31_RS02855 at 45.358 kb on + strand, within EX31_RS02855 at 45.358 kb on + strand, within EX31_RS02855 at 45.358 kb on + strand, within EX31_RS02855 at 45.358 kb on + strand, within EX31_RS02855 at 45.359 kb on - strand, within EX31_RS02855 at 45.359 kb on - strand, within EX31_RS02855 at 45.359 kb on - strand, within EX31_RS02855 at 45.420 kb on + strand, within EX31_RS02855 at 45.421 kb on - strand, within EX31_RS02855 at 45.449 kb on - strand, within EX31_RS02855 at 45.461 kb on + strand, within EX31_RS02855 at 45.461 kb on + strand, within EX31_RS02855 at 45.461 kb on + strand, within EX31_RS02855 at 45.462 kb on - strand, within EX31_RS02855 at 45.470 kb on + strand, within EX31_RS02855 at 45.470 kb on + strand, within EX31_RS02855 at 45.475 kb on + strand, within EX31_RS02855 at 45.480 kb on + strand, within EX31_RS02855 at 45.481 kb on - strand, within EX31_RS02855 at 45.502 kb on + strand, within EX31_RS02855 at 45.519 kb on - strand, within EX31_RS02855 at 45.592 kb on + strand, within EX31_RS02855 at 45.592 kb on + strand, within EX31_RS02855 at 45.592 kb on + strand, within EX31_RS02855 at 45.593 kb on - strand, within EX31_RS02855 at 45.593 kb on - strand, within EX31_RS02855 at 45.639 kb on + strand, within EX31_RS02855 at 45.640 kb on - strand, within EX31_RS02855 at 45.651 kb on + strand, within EX31_RS02855 at 45.651 kb on + strand, within EX31_RS02855 at 45.651 kb on + strand, within EX31_RS02855 at 45.651 kb on + strand, within EX31_RS02855 at 45.651 kb on + strand, within EX31_RS02855 at 45.651 kb on + strand, within EX31_RS02855 at 45.652 kb on - strand, within EX31_RS02855 at 45.652 kb on - strand, within EX31_RS02855 at 45.658 kb on + strand, within EX31_RS02855 at 45.658 kb on + strand, within EX31_RS02855 at 45.658 kb on + strand, within EX31_RS02855 at 45.658 kb on + strand, within EX31_RS02855 at 45.658 kb on + strand, within EX31_RS02855 at 45.659 kb on - strand, within EX31_RS02855 at 45.659 kb on - strand, within EX31_RS02855 at 45.659 kb on - strand, within EX31_RS02855 at 45.759 kb on + strand, within EX31_RS02855 at 45.759 kb on + strand, within EX31_RS02855 at 45.775 kb on + strand, within EX31_RS02855 at 45.815 kb on - strand, within EX31_RS02855 at 46.214 kb on - strand, within EX31_RS02855 at 46.225 kb on + strand, within EX31_RS02855 at 46.246 kb on + strand, within EX31_RS02855 at 46.258 kb on + strand, within EX31_RS02855 at 46.258 kb on + strand, within EX31_RS02855 at 46.258 kb on + strand, within EX31_RS02855 at 46.258 kb on + strand, within EX31_RS02855 at 46.258 kb on + strand, within EX31_RS02855 at 46.259 kb on - strand, within EX31_RS02855 at 46.259 kb on - strand, within EX31_RS02855 at 46.259 kb on - strand, within EX31_RS02855 at 46.339 kb on + strand, within EX31_RS02855 at 46.363 kb on + strand, within EX31_RS02855 at 46.364 kb on - strand, within EX31_RS02855 at 46.384 kb on + strand, within EX31_RS02855 at 46.431 kb on + strand at 46.465 kb on - strand at 46.481 kb on - strand at 46.511 kb on - strand at 46.511 kb on - strand at 46.511 kb on - strand at 46.532 kb on - strand at 46.561 kb on + strand at 46.561 kb on + strand at 46.561 kb on + strand at 46.561 kb on + strand at 46.561 kb on + strand at 46.561 kb on + strand at 46.562 kb on - strand at 46.562 kb on - strand at 46.565 kb on + strand at 46.565 kb on + strand at 46.565 kb on + strand at 46.565 kb on + strand at 46.565 kb on + strand at 46.565 kb on + strand at 46.565 kb on + strand at 46.565 kb on + strand at 46.565 kb on + strand at 46.565 kb on + strand at 46.565 kb on + strand at 46.565 kb on + strand at 46.565 kb on + strand at 46.565 kb on + strand at 46.565 kb on + strand at 46.565 kb on + strand at 46.566 kb on - strand at 46.566 kb on - strand at 46.566 kb on - strand at 46.566 kb on - strand at 46.566 kb on - strand at 46.663 kb on + strand at 46.726 kb on - strand, within EX31_RS02860 at 46.726 kb on - strand, within EX31_RS02860 at 46.849 kb on + strand, within EX31_RS02860 at 46.849 kb on + strand, within EX31_RS02860 at 46.849 kb on + strand, within EX31_RS02860 at 46.960 kb on + strand, within EX31_RS02860 at 46.964 kb on + strand, within EX31_RS02860 at 46.964 kb on + strand, within EX31_RS02860 at 46.964 kb on + strand, within EX31_RS02860 at 46.964 kb on + strand, within EX31_RS02860 at 46.964 kb on + strand, within EX31_RS02860 at 46.964 kb on + strand, within EX31_RS02860 at 46.964 kb on + strand, within EX31_RS02860 at 46.964 kb on + strand, within EX31_RS02860 at 46.964 kb on + strand, within EX31_RS02860 at 46.965 kb on - strand, within EX31_RS02860 at 46.965 kb on - strand, within EX31_RS02860 at 46.965 kb on - strand, within EX31_RS02860 at 46.965 kb on - strand, within EX31_RS02860 at 46.966 kb on + strand, within EX31_RS02860 at 46.967 kb on - strand, within EX31_RS02860 at 46.967 kb on - strand, within EX31_RS02860 at 46.967 kb on - strand, within EX31_RS02860 at 46.991 kb on + strand, within EX31_RS02860 at 46.992 kb on - strand, within EX31_RS02860 at 46.992 kb on - strand, within EX31_RS02860 at 47.040 kb on + strand, within EX31_RS02860 at 47.041 kb on - strand, within EX31_RS02860 at 47.056 kb on - strand, within EX31_RS02860 at 47.098 kb on + strand, within EX31_RS02860 at 47.115 kb on + strand, within EX31_RS02860 at 47.178 kb on - strand, within EX31_RS02860 at 47.256 kb on - strand, within EX31_RS02860 at 47.256 kb on - strand, within EX31_RS02860 at 47.288 kb on + strand, within EX31_RS02860 at 47.288 kb on + strand, within EX31_RS02860 at 47.289 kb on - strand, within EX31_RS02860 at 47.361 kb on + strand, within EX31_RS02860 at 47.366 kb on + strand, within EX31_RS02860 at 47.366 kb on + strand, within EX31_RS02860 at 47.366 kb on + strand, within EX31_RS02860 at 47.366 kb on + strand, within EX31_RS02860 at 47.366 kb on + strand, within EX31_RS02860 at 47.367 kb on - strand, within EX31_RS02860 at 47.367 kb on - strand, within EX31_RS02860 at 47.370 kb on + strand, within EX31_RS02860 at 47.371 kb on - strand, within EX31_RS02860 at 47.406 kb on - strand, within EX31_RS02860 at 47.480 kb on + strand at 47.481 kb on - strand at 47.512 kb on + strand at 47.543 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N); RCH2 media; no shaking remove 44,184 + EX31_RS02850 0.83 +0.6 44,185 - EX31_RS02850 0.83 +1.9 44,185 - EX31_RS02850 0.83 +0.8 44,194 - EX31_RS02850 0.84 +0.3 44,194 - EX31_RS02850 0.84 +0.1 44,217 - EX31_RS02850 0.85 +0.1 44,217 - EX31_RS02850 0.85 +0.1 44,223 - EX31_RS02850 0.86 +0.9 44,242 - EX31_RS02850 0.87 +0.5 44,242 - EX31_RS02850 0.87 +0.4 44,269 - EX31_RS02850 0.89 +0.8 44,270 + EX31_RS02850 0.90 +0.4 44,271 - EX31_RS02850 0.90 -0.4 44,271 - EX31_RS02850 0.90 -1.3 44,407 - +0.6 44,407 - -0.4 44,407 - -0.8 44,466 + -1.0 44,467 - -0.4 44,468 + +0.5 44,468 + +0.2 44,469 - +0.6 44,469 - +0.7 44,469 - -0.6 44,469 - +0.3 44,469 - +0.5 44,478 + +0.1 44,478 + -0.6 44,479 - +0.1 44,479 - -0.5 44,480 + +1.0 44,481 - +0.2 44,488 - +0.4 44,499 - +0.3 44,499 - +1.1 44,510 + +1.2 44,510 + +0.1 44,510 + +1.2 44,511 - -0.5 44,511 - +1.2 44,511 - -0.6 44,513 + +0.5 44,513 + -1.0 44,514 - +1.3 44,522 + -2.8 44,522 + +0.4 44,522 + +0.3 44,522 + -0.9 44,523 - -0.1 44,523 - -0.1 44,523 - +0.0 44,523 - -0.4 44,561 + +0.4 44,740 - -1.0 44,771 + -1.0 44,771 + +0.1 44,771 + +0.6 44,772 - -1.4 44,772 - -0.8 44,772 - +1.5 44,772 - +1.2 44,772 - -1.3 44,772 - -0.2 44,779 - -0.6 44,779 - -0.1 44,871 + +0.2 44,872 - -0.9 44,905 + +1.6 44,906 - +1.1 44,906 - -0.1 44,960 - +0.2 44,968 + -0.1 44,973 + -0.3 44,973 + +0.5 44,973 + +0.5 44,973 + +0.0 44,974 - +0.1 44,986 + +0.1 44,986 + +1.0 44,986 + -0.4 44,987 - +0.4 44,987 - +0.3 45,027 + -0.3 45,028 - +0.3 45,028 - -0.1 45,040 + +1.4 45,041 - -1.9 45,051 + +1.5 45,052 - +0.3 45,084 + +0.4 45,084 + -0.6 45,084 + -0.6 45,084 + +0.4 45,085 - -1.3 45,085 - -0.2 45,085 - -0.9 45,085 - -1.3 45,085 - +0.8 45,120 + EX31_RS02855 0.11 -0.2 45,121 - EX31_RS02855 0.11 +0.3 45,155 - EX31_RS02855 0.13 -0.2 45,158 + EX31_RS02855 0.13 -0.0 45,202 + EX31_RS02855 0.16 +0.1 45,203 - EX31_RS02855 0.16 +0.1 45,292 + EX31_RS02855 0.21 +1.2 45,323 - EX31_RS02855 0.23 -0.1 45,323 - EX31_RS02855 0.23 +0.0 45,358 + EX31_RS02855 0.25 +0.9 45,358 + EX31_RS02855 0.25 -0.4 45,358 + EX31_RS02855 0.25 +0.7 45,358 + EX31_RS02855 0.25 -0.7 45,358 + EX31_RS02855 0.25 +1.2 45,359 - EX31_RS02855 0.25 +0.3 45,359 - EX31_RS02855 0.25 +0.1 45,359 - EX31_RS02855 0.25 +1.0 45,420 + EX31_RS02855 0.29 -0.0 45,421 - EX31_RS02855 0.29 -0.1 45,449 - EX31_RS02855 0.31 -0.4 45,461 + EX31_RS02855 0.32 +0.7 45,461 + EX31_RS02855 0.32 -0.5 45,461 + EX31_RS02855 0.32 +0.4 45,462 - EX31_RS02855 0.32 +0.6 45,470 + EX31_RS02855 0.32 -0.5 45,470 + EX31_RS02855 0.32 +0.9 45,475 + EX31_RS02855 0.33 -1.4 45,480 + EX31_RS02855 0.33 -0.3 45,481 - EX31_RS02855 0.33 -0.2 45,502 + EX31_RS02855 0.34 +0.7 45,519 - EX31_RS02855 0.35 +0.8 45,592 + EX31_RS02855 0.40 -0.2 45,592 + EX31_RS02855 0.40 +0.3 45,592 + EX31_RS02855 0.40 +1.4 45,593 - EX31_RS02855 0.40 -0.2 45,593 - EX31_RS02855 0.40 +1.2 45,639 + EX31_RS02855 0.43 -0.8 45,640 - EX31_RS02855 0.43 -0.9 45,651 + EX31_RS02855 0.44 +1.0 45,651 + EX31_RS02855 0.44 -0.1 45,651 + EX31_RS02855 0.44 +0.2 45,651 + EX31_RS02855 0.44 -1.0 45,651 + EX31_RS02855 0.44 -0.5 45,651 + EX31_RS02855 0.44 +2.0 45,652 - EX31_RS02855 0.44 -0.8 45,652 - EX31_RS02855 0.44 +1.4 45,658 + EX31_RS02855 0.44 +1.2 45,658 + EX31_RS02855 0.44 -1.4 45,658 + EX31_RS02855 0.44 -0.1 45,658 + EX31_RS02855 0.44 +0.8 45,658 + EX31_RS02855 0.44 -0.5 45,659 - EX31_RS02855 0.44 +0.4 45,659 - EX31_RS02855 0.44 -0.8 45,659 - EX31_RS02855 0.44 +0.8 45,759 + EX31_RS02855 0.50 -0.5 45,759 + EX31_RS02855 0.50 -0.2 45,775 + EX31_RS02855 0.51 +0.0 45,815 - EX31_RS02855 0.54 -0.1 46,214 - EX31_RS02855 0.79 +0.4 46,225 + EX31_RS02855 0.79 -0.4 46,246 + EX31_RS02855 0.81 +0.4 46,258 + EX31_RS02855 0.81 +1.0 46,258 + EX31_RS02855 0.81 -0.8 46,258 + EX31_RS02855 0.81 -0.9 46,258 + EX31_RS02855 0.81 -0.8 46,258 + EX31_RS02855 0.81 +0.4 46,259 - EX31_RS02855 0.81 +0.7 46,259 - EX31_RS02855 0.81 +0.8 46,259 - EX31_RS02855 0.81 -0.6 46,339 + EX31_RS02855 0.86 -0.8 46,363 + EX31_RS02855 0.88 -0.1 46,364 - EX31_RS02855 0.88 -0.0 46,384 + EX31_RS02855 0.89 +0.5 46,431 + +0.3 46,465 - +0.2 46,481 - +0.7 46,511 - -0.4 46,511 - +0.1 46,511 - -0.0 46,532 - -0.0 46,561 + -2.6 46,561 + -0.9 46,561 + -0.2 46,561 + +0.0 46,561 + +2.6 46,561 + +0.3 46,562 - +0.7 46,562 - +0.7 46,565 + +0.3 46,565 + +0.8 46,565 + +0.5 46,565 + -0.8 46,565 + -0.3 46,565 + -0.4 46,565 + +0.5 46,565 + +0.5 46,565 + -0.4 46,565 + +1.0 46,565 + +0.5 46,565 + -0.9 46,565 + -0.4 46,565 + +0.9 46,565 + +0.9 46,565 + -0.5 46,566 - -0.6 46,566 - +0.9 46,566 - +0.2 46,566 - +0.7 46,566 - -1.0 46,663 + -0.2 46,726 - EX31_RS02860 0.16 +0.4 46,726 - EX31_RS02860 0.16 +0.2 46,849 + EX31_RS02860 0.28 +0.1 46,849 + EX31_RS02860 0.28 -0.3 46,849 + EX31_RS02860 0.28 +1.5 46,960 + EX31_RS02860 0.39 -0.8 46,964 + EX31_RS02860 0.39 +0.7 46,964 + EX31_RS02860 0.39 +0.5 46,964 + EX31_RS02860 0.39 +1.6 46,964 + EX31_RS02860 0.39 -0.6 46,964 + EX31_RS02860 0.39 -0.9 46,964 + EX31_RS02860 0.39 +1.0 46,964 + EX31_RS02860 0.39 +0.2 46,964 + EX31_RS02860 0.39 +0.3 46,964 + EX31_RS02860 0.39 -0.6 46,965 - EX31_RS02860 0.39 -0.4 46,965 - EX31_RS02860 0.39 -0.4 46,965 - EX31_RS02860 0.39 +1.2 46,965 - EX31_RS02860 0.39 +0.1 46,966 + EX31_RS02860 0.39 -0.8 46,967 - EX31_RS02860 0.39 -0.2 46,967 - EX31_RS02860 0.39 +0.4 46,967 - EX31_RS02860 0.39 -0.3 46,991 + EX31_RS02860 0.42 +0.4 46,992 - EX31_RS02860 0.42 -0.5 46,992 - EX31_RS02860 0.42 +0.4 47,040 + EX31_RS02860 0.47 -0.3 47,041 - EX31_RS02860 0.47 +0.3 47,056 - EX31_RS02860 0.48 +0.0 47,098 + EX31_RS02860 0.52 -1.9 47,115 + EX31_RS02860 0.54 -1.1 47,178 - EX31_RS02860 0.60 +0.3 47,256 - EX31_RS02860 0.68 +0.6 47,256 - EX31_RS02860 0.68 +0.7 47,288 + EX31_RS02860 0.71 +1.5 47,288 + EX31_RS02860 0.71 +0.1 47,289 - EX31_RS02860 0.71 +1.2 47,361 + EX31_RS02860 0.78 +0.5 47,366 + EX31_RS02860 0.79 -1.1 47,366 + EX31_RS02860 0.79 -0.1 47,366 + EX31_RS02860 0.79 -0.6 47,366 + EX31_RS02860 0.79 +0.2 47,366 + EX31_RS02860 0.79 +0.8 47,367 - EX31_RS02860 0.79 -0.1 47,367 - EX31_RS02860 0.79 -1.2 47,370 + EX31_RS02860 0.79 -0.2 47,371 - EX31_RS02860 0.79 -1.3 47,406 - EX31_RS02860 0.83 +1.5 47,480 + +0.2 47,481 - -0.3 47,512 + +0.2 47,543 - +0.0
Or see this region's nucleotide sequence