Strain Fitness in Rahnella sp. WP5 around EX31_RS01020

Experiment: Ammonium chloride (N); RCH2 media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01015 and EX31_RS01020 are separated by 31 nucleotidesEX31_RS01020 and EX31_RS01025 are separated by 38 nucleotidesEX31_RS01025 and EX31_RS01030 are separated by 195 nucleotides EX31_RS01015: EX31_RS01015 - type VI secretion system ATPase TssH, at 221,072 to 223,642 _RS01015 EX31_RS01020: EX31_RS01020 - hypothetical protein, at 223,674 to 225,011 _RS01020 EX31_RS01025: EX31_RS01025 - hypothetical protein, at 225,050 to 225,763 _RS01025 EX31_RS01030: EX31_RS01030 - low affinity potassium transporter Kup, at 225,959 to 227,833 _RS01030 Position (kb) 223 224 225 226Strain fitness (log2 ratio) -2 -1 0 1 2at 222.820 kb on + strand, within EX31_RS01015at 222.903 kb on + strand, within EX31_RS01015at 222.903 kb on + strand, within EX31_RS01015at 222.903 kb on + strand, within EX31_RS01015at 222.907 kb on + strand, within EX31_RS01015at 222.907 kb on + strand, within EX31_RS01015at 222.916 kb on + strand, within EX31_RS01015at 222.917 kb on - strand, within EX31_RS01015at 222.917 kb on - strand, within EX31_RS01015at 222.917 kb on - strand, within EX31_RS01015at 222.917 kb on - strand, within EX31_RS01015at 222.917 kb on - strand, within EX31_RS01015at 222.946 kb on - strand, within EX31_RS01015at 223.028 kb on + strand, within EX31_RS01015at 223.035 kb on + strand, within EX31_RS01015at 223.036 kb on - strand, within EX31_RS01015at 223.089 kb on - strand, within EX31_RS01015at 223.095 kb on + strand, within EX31_RS01015at 223.095 kb on + strand, within EX31_RS01015at 223.159 kb on + strand, within EX31_RS01015at 223.160 kb on - strand, within EX31_RS01015at 223.265 kb on + strand, within EX31_RS01015at 223.265 kb on + strand, within EX31_RS01015at 223.265 kb on + strand, within EX31_RS01015at 223.293 kb on + strand, within EX31_RS01015at 223.397 kb on - strandat 223.658 kb on + strandat 223.750 kb on + strandat 223.751 kb on - strandat 223.830 kb on + strand, within EX31_RS01020at 223.830 kb on + strand, within EX31_RS01020at 223.883 kb on + strand, within EX31_RS01020at 223.883 kb on + strand, within EX31_RS01020at 224.027 kb on + strand, within EX31_RS01020at 224.027 kb on + strand, within EX31_RS01020at 224.027 kb on + strand, within EX31_RS01020at 224.027 kb on + strand, within EX31_RS01020at 224.031 kb on + strand, within EX31_RS01020at 224.031 kb on + strand, within EX31_RS01020at 224.032 kb on - strand, within EX31_RS01020at 224.032 kb on - strand, within EX31_RS01020at 224.032 kb on - strand, within EX31_RS01020at 224.078 kb on - strand, within EX31_RS01020at 224.078 kb on - strand, within EX31_RS01020at 224.238 kb on - strand, within EX31_RS01020at 224.252 kb on - strand, within EX31_RS01020at 224.294 kb on - strand, within EX31_RS01020at 224.294 kb on - strand, within EX31_RS01020at 224.302 kb on + strand, within EX31_RS01020at 224.302 kb on + strand, within EX31_RS01020at 224.302 kb on + strand, within EX31_RS01020at 224.302 kb on + strand, within EX31_RS01020at 224.491 kb on + strand, within EX31_RS01020at 224.492 kb on - strand, within EX31_RS01020at 224.602 kb on + strand, within EX31_RS01020at 224.602 kb on + strand, within EX31_RS01020at 224.602 kb on + strand, within EX31_RS01020at 224.603 kb on - strand, within EX31_RS01020at 224.603 kb on - strand, within EX31_RS01020at 224.623 kb on + strand, within EX31_RS01020at 224.623 kb on + strand, within EX31_RS01020at 224.624 kb on - strand, within EX31_RS01020at 224.664 kb on + strand, within EX31_RS01020at 224.689 kb on + strand, within EX31_RS01020at 224.690 kb on - strand, within EX31_RS01020at 224.708 kb on + strand, within EX31_RS01020at 224.709 kb on - strand, within EX31_RS01020at 224.739 kb on - strand, within EX31_RS01020at 224.741 kb on + strand, within EX31_RS01020at 224.742 kb on - strand, within EX31_RS01020at 224.799 kb on + strand, within EX31_RS01020at 224.800 kb on - strand, within EX31_RS01020at 224.800 kb on - strand, within EX31_RS01020at 224.831 kb on - strand, within EX31_RS01020at 224.839 kb on + strand, within EX31_RS01020at 224.939 kb on - strandat 224.989 kb on - strandat 225.022 kb on - strandat 225.028 kb on - strandat 225.164 kb on + strand, within EX31_RS01025at 225.165 kb on - strand, within EX31_RS01025at 225.172 kb on + strand, within EX31_RS01025at 225.309 kb on + strand, within EX31_RS01025at 225.353 kb on - strand, within EX31_RS01025at 225.378 kb on + strand, within EX31_RS01025at 225.379 kb on - strand, within EX31_RS01025at 225.380 kb on - strand, within EX31_RS01025at 225.419 kb on + strand, within EX31_RS01025at 225.419 kb on + strand, within EX31_RS01025at 225.419 kb on + strand, within EX31_RS01025at 225.420 kb on - strand, within EX31_RS01025at 225.540 kb on - strand, within EX31_RS01025at 225.586 kb on + strand, within EX31_RS01025at 225.586 kb on + strand, within EX31_RS01025at 225.586 kb on + strand, within EX31_RS01025at 225.587 kb on - strand, within EX31_RS01025at 225.590 kb on + strand, within EX31_RS01025at 225.600 kb on + strand, within EX31_RS01025at 225.646 kb on + strand, within EX31_RS01025at 225.647 kb on - strand, within EX31_RS01025at 225.647 kb on - strand, within EX31_RS01025at 225.652 kb on + strand, within EX31_RS01025at 225.654 kb on + strand, within EX31_RS01025at 225.654 kb on + strand, within EX31_RS01025at 225.654 kb on + strand, within EX31_RS01025at 225.705 kb on + strandat 225.727 kb on + strandat 225.795 kb on + strandat 225.830 kb on + strandat 225.831 kb on - strandat 225.841 kb on + strandat 225.842 kb on - strandat 225.854 kb on + strandat 225.868 kb on - strandat 225.880 kb on + strandat 225.880 kb on + strandat 225.881 kb on - strandat 225.881 kb on - strandat 225.881 kb on - strandat 225.882 kb on + strandat 225.894 kb on + strandat 225.894 kb on + strandat 225.894 kb on + strandat 225.894 kb on + strandat 225.895 kb on - strandat 225.902 kb on + strandat 225.902 kb on + strandat 225.903 kb on - strandat 225.903 kb on - strandat 225.903 kb on - strandat 225.903 kb on - strandat 225.906 kb on + strandat 225.906 kb on + strandat 225.906 kb on + strandat 225.906 kb on + strandat 225.906 kb on + strandat 225.906 kb on + strandat 225.907 kb on - strandat 225.907 kb on - strandat 225.907 kb on - strandat 225.907 kb on - strandat 225.907 kb on - strandat 225.907 kb on - strandat 225.908 kb on + strandat 225.908 kb on + strandat 225.909 kb on - strandat 225.976 kb on + strandat 225.991 kb on + strandat 225.992 kb on - strandat 225.992 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); RCH2 media; no shaking
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222,820 + EX31_RS01015 0.68 -0.6
222,903 + EX31_RS01015 0.71 +1.1
222,903 + EX31_RS01015 0.71 -0.5
222,903 + EX31_RS01015 0.71 +0.0
222,907 + EX31_RS01015 0.71 -0.0
222,907 + EX31_RS01015 0.71 +0.2
222,916 + EX31_RS01015 0.72 +0.2
222,917 - EX31_RS01015 0.72 +0.2
222,917 - EX31_RS01015 0.72 +2.5
222,917 - EX31_RS01015 0.72 +0.2
222,917 - EX31_RS01015 0.72 -0.1
222,917 - EX31_RS01015 0.72 +0.7
222,946 - EX31_RS01015 0.73 +0.8
223,028 + EX31_RS01015 0.76 +0.5
223,035 + EX31_RS01015 0.76 +0.3
223,036 - EX31_RS01015 0.76 -0.9
223,089 - EX31_RS01015 0.78 -1.6
223,095 + EX31_RS01015 0.79 +0.3
223,095 + EX31_RS01015 0.79 +0.1
223,159 + EX31_RS01015 0.81 +0.5
223,160 - EX31_RS01015 0.81 -0.2
223,265 + EX31_RS01015 0.85 +0.5
223,265 + EX31_RS01015 0.85 -0.0
223,265 + EX31_RS01015 0.85 +0.7
223,293 + EX31_RS01015 0.86 -0.3
223,397 - -0.6
223,658 + +1.1
223,750 + -1.8
223,751 - -1.5
223,830 + EX31_RS01020 0.12 +0.7
223,830 + EX31_RS01020 0.12 +0.3
223,883 + EX31_RS01020 0.16 -0.1
223,883 + EX31_RS01020 0.16 +0.1
224,027 + EX31_RS01020 0.26 +0.1
224,027 + EX31_RS01020 0.26 +1.4
224,027 + EX31_RS01020 0.26 +0.5
224,027 + EX31_RS01020 0.26 +0.3
224,031 + EX31_RS01020 0.27 +1.3
224,031 + EX31_RS01020 0.27 +0.3
224,032 - EX31_RS01020 0.27 -0.9
224,032 - EX31_RS01020 0.27 -0.7
224,032 - EX31_RS01020 0.27 +0.8
224,078 - EX31_RS01020 0.30 +0.7
224,078 - EX31_RS01020 0.30 -0.7
224,238 - EX31_RS01020 0.42 -0.1
224,252 - EX31_RS01020 0.43 -0.6
224,294 - EX31_RS01020 0.46 -2.1
224,294 - EX31_RS01020 0.46 -0.6
224,302 + EX31_RS01020 0.47 +1.0
224,302 + EX31_RS01020 0.47 -1.9
224,302 + EX31_RS01020 0.47 +0.3
224,302 + EX31_RS01020 0.47 -0.9
224,491 + EX31_RS01020 0.61 -0.7
224,492 - EX31_RS01020 0.61 -1.2
224,602 + EX31_RS01020 0.69 -1.1
224,602 + EX31_RS01020 0.69 -0.4
224,602 + EX31_RS01020 0.69 -2.2
224,603 - EX31_RS01020 0.69 +0.1
224,603 - EX31_RS01020 0.69 -1.1
224,623 + EX31_RS01020 0.71 +1.1
224,623 + EX31_RS01020 0.71 -1.3
224,624 - EX31_RS01020 0.71 -0.9
224,664 + EX31_RS01020 0.74 +0.1
224,689 + EX31_RS01020 0.76 +0.3
224,690 - EX31_RS01020 0.76 -1.6
224,708 + EX31_RS01020 0.77 +0.4
224,709 - EX31_RS01020 0.77 -0.5
224,739 - EX31_RS01020 0.80 -0.8
224,741 + EX31_RS01020 0.80 -0.3
224,742 - EX31_RS01020 0.80 +1.6
224,799 + EX31_RS01020 0.84 -0.0
224,800 - EX31_RS01020 0.84 +0.3
224,800 - EX31_RS01020 0.84 +0.1
224,831 - EX31_RS01020 0.86 +2.1
224,839 + EX31_RS01020 0.87 -0.5
224,939 - -0.2
224,989 - -1.9
225,022 - +1.1
225,028 - +0.9
225,164 + EX31_RS01025 0.16 +0.6
225,165 - EX31_RS01025 0.16 +1.7
225,172 + EX31_RS01025 0.17 +1.5
225,309 + EX31_RS01025 0.36 -1.1
225,353 - EX31_RS01025 0.42 -0.9
225,378 + EX31_RS01025 0.46 -0.4
225,379 - EX31_RS01025 0.46 -2.0
225,380 - EX31_RS01025 0.46 +0.8
225,419 + EX31_RS01025 0.52 -0.1
225,419 + EX31_RS01025 0.52 -0.5
225,419 + EX31_RS01025 0.52 -2.3
225,420 - EX31_RS01025 0.52 +0.9
225,540 - EX31_RS01025 0.69 +0.2
225,586 + EX31_RS01025 0.75 -0.1
225,586 + EX31_RS01025 0.75 -0.6
225,586 + EX31_RS01025 0.75 -2.2
225,587 - EX31_RS01025 0.75 -2.4
225,590 + EX31_RS01025 0.76 +0.5
225,600 + EX31_RS01025 0.77 -1.4
225,646 + EX31_RS01025 0.83 -0.4
225,647 - EX31_RS01025 0.84 +2.1
225,647 - EX31_RS01025 0.84 -1.9
225,652 + EX31_RS01025 0.84 +1.3
225,654 + EX31_RS01025 0.85 -0.0
225,654 + EX31_RS01025 0.85 -0.1
225,654 + EX31_RS01025 0.85 +0.4
225,705 + +1.6
225,727 + -1.2
225,795 + +0.4
225,830 + -0.2
225,831 - -0.3
225,841 + -0.1
225,842 - -1.1
225,854 + -0.6
225,868 - -0.9
225,880 + +1.0
225,880 + +0.6
225,881 - -0.4
225,881 - +0.4
225,881 - +0.1
225,882 + +0.6
225,894 + -0.2
225,894 + -0.7
225,894 + +0.5
225,894 + -0.2
225,895 - +0.7
225,902 + -0.8
225,902 + -0.6
225,903 - +0.7
225,903 - +0.9
225,903 - +0.9
225,903 - +1.1
225,906 + +0.2
225,906 + -0.5
225,906 + +0.9
225,906 + +0.5
225,906 + +1.2
225,906 + -0.3
225,907 - -0.2
225,907 - +0.7
225,907 - -0.0
225,907 - +0.8
225,907 - -1.1
225,907 - -0.2
225,908 + -0.6
225,908 + +0.1
225,909 - +0.4
225,976 + -0.9
225,991 + +1.1
225,992 - +0.0
225,992 - +0.4

Or see this region's nucleotide sequence