Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03521 and CCNA_03522 are separated by 197 nucleotides CCNA_03522 and CCNA_03523 are separated by 164 nucleotides CCNA_03523 and CCNA_03524 are separated by 287 nucleotides
CCNA_03521: CCNA_03521 - pectin lyase-related protein, at 3,677,701 to 3,678,537
_03521
CCNA_03522: CCNA_03522 - Zn-dependent protease TldD, at 3,678,735 to 3,680,171
_03522
CCNA_03523: CCNA_03523 - acetyltransferase, GNAT superfamily, at 3,680,336 to 3,680,833
_03523
CCNA_03524: CCNA_03524 - di-/tripeptide transporter, at 3,681,121 to 3,683,001
_03524
Position (kb)
3678
3679
3680
3681 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 3677.783 kb on - strand at 3677.807 kb on + strand, within CCNA_03521 at 3677.807 kb on + strand, within CCNA_03521 at 3677.807 kb on + strand, within CCNA_03521 at 3677.807 kb on + strand, within CCNA_03521 at 3677.807 kb on + strand, within CCNA_03521 at 3677.807 kb on + strand, within CCNA_03521 at 3677.815 kb on - strand, within CCNA_03521 at 3677.815 kb on - strand, within CCNA_03521 at 3677.815 kb on - strand, within CCNA_03521 at 3677.821 kb on + strand, within CCNA_03521 at 3677.826 kb on + strand, within CCNA_03521 at 3677.829 kb on - strand, within CCNA_03521 at 3677.880 kb on + strand, within CCNA_03521 at 3677.880 kb on + strand, within CCNA_03521 at 3677.889 kb on + strand, within CCNA_03521 at 3677.897 kb on - strand, within CCNA_03521 at 3677.952 kb on + strand, within CCNA_03521 at 3677.955 kb on - strand, within CCNA_03521 at 3677.960 kb on - strand, within CCNA_03521 at 3677.960 kb on - strand, within CCNA_03521 at 3677.960 kb on - strand, within CCNA_03521 at 3677.960 kb on - strand, within CCNA_03521 at 3677.960 kb on - strand, within CCNA_03521 at 3677.962 kb on + strand, within CCNA_03521 at 3678.026 kb on + strand, within CCNA_03521 at 3678.029 kb on - strand, within CCNA_03521 at 3678.029 kb on - strand, within CCNA_03521 at 3678.043 kb on + strand, within CCNA_03521 at 3678.048 kb on + strand, within CCNA_03521 at 3678.048 kb on + strand, within CCNA_03521 at 3678.048 kb on + strand, within CCNA_03521 at 3678.048 kb on + strand, within CCNA_03521 at 3678.048 kb on + strand, within CCNA_03521 at 3678.048 kb on + strand, within CCNA_03521 at 3678.051 kb on - strand, within CCNA_03521 at 3678.056 kb on - strand, within CCNA_03521 at 3678.056 kb on - strand, within CCNA_03521 at 3678.056 kb on - strand, within CCNA_03521 at 3678.056 kb on - strand, within CCNA_03521 at 3678.063 kb on + strand, within CCNA_03521 at 3678.099 kb on + strand, within CCNA_03521 at 3678.121 kb on + strand, within CCNA_03521 at 3678.143 kb on + strand, within CCNA_03521 at 3678.143 kb on + strand, within CCNA_03521 at 3678.143 kb on + strand, within CCNA_03521 at 3678.143 kb on + strand, within CCNA_03521 at 3678.150 kb on + strand, within CCNA_03521 at 3678.151 kb on - strand, within CCNA_03521 at 3678.158 kb on + strand, within CCNA_03521 at 3678.160 kb on + strand, within CCNA_03521 at 3678.160 kb on + strand, within CCNA_03521 at 3678.166 kb on - strand, within CCNA_03521 at 3678.169 kb on + strand, within CCNA_03521 at 3678.177 kb on + strand, within CCNA_03521 at 3678.206 kb on + strand, within CCNA_03521 at 3678.206 kb on + strand, within CCNA_03521 at 3678.206 kb on + strand, within CCNA_03521 at 3678.214 kb on - strand, within CCNA_03521 at 3678.214 kb on - strand, within CCNA_03521 at 3678.214 kb on - strand, within CCNA_03521 at 3678.245 kb on + strand, within CCNA_03521 at 3678.260 kb on + strand, within CCNA_03521 at 3678.267 kb on - strand, within CCNA_03521 at 3678.267 kb on - strand, within CCNA_03521 at 3678.267 kb on - strand, within CCNA_03521 at 3678.268 kb on - strand, within CCNA_03521 at 3678.303 kb on + strand, within CCNA_03521 at 3678.303 kb on + strand, within CCNA_03521 at 3678.303 kb on + strand, within CCNA_03521 at 3678.311 kb on - strand, within CCNA_03521 at 3678.352 kb on + strand, within CCNA_03521 at 3678.352 kb on + strand, within CCNA_03521 at 3678.360 kb on - strand, within CCNA_03521 at 3678.383 kb on + strand, within CCNA_03521 at 3678.423 kb on - strand, within CCNA_03521 at 3678.432 kb on + strand, within CCNA_03521 at 3678.432 kb on + strand, within CCNA_03521 at 3678.434 kb on - strand, within CCNA_03521 at 3678.463 kb on + strand at 3678.509 kb on + strand at 3678.527 kb on - strand at 3678.544 kb on - strand at 3678.562 kb on + strand at 3678.572 kb on + strand at 3678.572 kb on + strand at 3678.572 kb on + strand at 3678.578 kb on + strand at 3678.578 kb on + strand at 3678.580 kb on - strand at 3678.580 kb on - strand at 3678.580 kb on - strand at 3678.580 kb on - strand at 3678.586 kb on - strand at 3678.586 kb on - strand at 3678.598 kb on - strand at 3678.627 kb on - strand at 3678.636 kb on + strand at 3678.636 kb on + strand at 3678.650 kb on + strand at 3678.655 kb on + strand at 3678.678 kb on - strand at 3678.678 kb on - strand at 3678.678 kb on - strand at 3678.757 kb on + strand at 3678.762 kb on - strand at 3678.762 kb on - strand at 3678.776 kb on - strand at 3678.813 kb on - strand at 3678.818 kb on - strand at 3678.822 kb on + strand at 3678.822 kb on + strand at 3678.822 kb on + strand at 3678.830 kb on - strand at 3678.830 kb on - strand at 3678.863 kb on + strand at 3678.884 kb on - strand, within CCNA_03522 at 3678.884 kb on - strand, within CCNA_03522 at 3678.897 kb on + strand, within CCNA_03522 at 3678.899 kb on + strand, within CCNA_03522 at 3678.899 kb on + strand, within CCNA_03522 at 3678.899 kb on + strand, within CCNA_03522 at 3678.899 kb on + strand, within CCNA_03522 at 3678.899 kb on + strand, within CCNA_03522 at 3678.899 kb on + strand, within CCNA_03522 at 3678.899 kb on + strand, within CCNA_03522 at 3678.913 kb on + strand, within CCNA_03522 at 3678.924 kb on + strand, within CCNA_03522 at 3678.931 kb on + strand, within CCNA_03522 at 3678.931 kb on + strand, within CCNA_03522 at 3678.931 kb on + strand, within CCNA_03522 at 3678.931 kb on + strand, within CCNA_03522 at 3678.931 kb on + strand, within CCNA_03522 at 3678.931 kb on + strand, within CCNA_03522 at 3678.939 kb on - strand, within CCNA_03522 at 3678.939 kb on - strand, within CCNA_03522 at 3678.939 kb on - strand, within CCNA_03522 at 3678.939 kb on - strand, within CCNA_03522 at 3678.939 kb on - strand, within CCNA_03522 at 3678.939 kb on - strand, within CCNA_03522 at 3678.939 kb on - strand, within CCNA_03522 at 3678.939 kb on - strand, within CCNA_03522 at 3679.031 kb on + strand, within CCNA_03522 at 3679.081 kb on + strand, within CCNA_03522 at 3679.082 kb on + strand, within CCNA_03522 at 3679.117 kb on - strand, within CCNA_03522 at 3679.145 kb on + strand, within CCNA_03522 at 3679.199 kb on - strand, within CCNA_03522 at 3679.230 kb on + strand, within CCNA_03522 at 3679.293 kb on + strand, within CCNA_03522 at 3679.301 kb on - strand, within CCNA_03522 at 3679.415 kb on + strand, within CCNA_03522 at 3679.493 kb on - strand, within CCNA_03522 at 3679.513 kb on - strand, within CCNA_03522 at 3679.513 kb on - strand, within CCNA_03522 at 3679.527 kb on - strand, within CCNA_03522 at 3679.583 kb on + strand, within CCNA_03522 at 3679.669 kb on + strand, within CCNA_03522 at 3679.717 kb on - strand, within CCNA_03522 at 3679.776 kb on + strand, within CCNA_03522 at 3679.781 kb on + strand, within CCNA_03522 at 3679.789 kb on - strand, within CCNA_03522 at 3679.789 kb on - strand, within CCNA_03522 at 3679.845 kb on + strand, within CCNA_03522 at 3679.861 kb on - strand, within CCNA_03522 at 3679.883 kb on - strand, within CCNA_03522 at 3679.915 kb on - strand, within CCNA_03522 at 3679.957 kb on - strand, within CCNA_03522 at 3679.993 kb on + strand, within CCNA_03522 at 3680.022 kb on + strand, within CCNA_03522 at 3680.030 kb on - strand at 3680.062 kb on - strand at 3680.079 kb on - strand at 3680.093 kb on + strand at 3680.143 kb on + strand at 3680.264 kb on - strand at 3680.264 kb on - strand at 3680.323 kb on + strand at 3680.350 kb on + strand at 3680.381 kb on + strand at 3680.381 kb on + strand at 3680.389 kb on - strand, within CCNA_03523 at 3680.401 kb on + strand, within CCNA_03523 at 3680.409 kb on - strand, within CCNA_03523 at 3680.409 kb on - strand, within CCNA_03523 at 3680.416 kb on + strand, within CCNA_03523 at 3680.416 kb on - strand, within CCNA_03523 at 3680.439 kb on + strand, within CCNA_03523 at 3680.439 kb on + strand, within CCNA_03523 at 3680.447 kb on - strand, within CCNA_03523 at 3680.447 kb on - strand, within CCNA_03523 at 3680.449 kb on + strand, within CCNA_03523 at 3680.454 kb on + strand, within CCNA_03523 at 3680.499 kb on + strand, within CCNA_03523 at 3680.502 kb on + strand, within CCNA_03523 at 3680.517 kb on - strand, within CCNA_03523 at 3680.535 kb on + strand, within CCNA_03523 at 3680.536 kb on - strand, within CCNA_03523 at 3680.536 kb on - strand, within CCNA_03523 at 3680.536 kb on - strand, within CCNA_03523 at 3680.543 kb on - strand, within CCNA_03523 at 3680.543 kb on - strand, within CCNA_03523 at 3680.543 kb on - strand, within CCNA_03523 at 3680.574 kb on + strand, within CCNA_03523 at 3680.624 kb on + strand, within CCNA_03523 at 3680.632 kb on - strand, within CCNA_03523 at 3680.632 kb on - strand, within CCNA_03523 at 3680.657 kb on - strand, within CCNA_03523 at 3680.668 kb on - strand, within CCNA_03523 at 3680.738 kb on - strand, within CCNA_03523 at 3680.738 kb on - strand, within CCNA_03523 at 3680.738 kb on - strand, within CCNA_03523 at 3680.740 kb on + strand, within CCNA_03523 at 3680.743 kb on - strand, within CCNA_03523 at 3680.748 kb on - strand, within CCNA_03523 at 3680.748 kb on - strand at 3680.748 kb on - strand, within CCNA_03523 at 3680.762 kb on - strand, within CCNA_03523 at 3680.781 kb on - strand, within CCNA_03523 at 3680.792 kb on + strand at 3680.792 kb on + strand at 3680.800 kb on - strand at 3680.894 kb on + strand at 3680.902 kb on - strand at 3680.902 kb on - strand at 3680.902 kb on - strand at 3680.964 kb on + strand at 3680.969 kb on + strand at 3681.042 kb on + strand at 3681.043 kb on - strand at 3681.050 kb on - strand at 3681.050 kb on - strand at 3681.066 kb on - strand at 3681.078 kb on + strand at 3681.085 kb on - strand at 3681.114 kb on - strand at 3681.119 kb on + strand at 3681.127 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 3,677,783 - -0.5 3,677,807 + CCNA_03521 0.13 -0.1 3,677,807 + CCNA_03521 0.13 +0.1 3,677,807 + CCNA_03521 0.13 -2.4 3,677,807 + CCNA_03521 0.13 +1.7 3,677,807 + CCNA_03521 0.13 +0.9 3,677,807 + CCNA_03521 0.13 -0.6 3,677,815 - CCNA_03521 0.14 -0.7 3,677,815 - CCNA_03521 0.14 -0.9 3,677,815 - CCNA_03521 0.14 +0.6 3,677,821 + CCNA_03521 0.14 -1.4 3,677,826 + CCNA_03521 0.15 +1.0 3,677,829 - CCNA_03521 0.15 -1.7 3,677,880 + CCNA_03521 0.21 -1.1 3,677,880 + CCNA_03521 0.21 -0.4 3,677,889 + CCNA_03521 0.22 -1.1 3,677,897 - CCNA_03521 0.23 -2.2 3,677,952 + CCNA_03521 0.30 -0.1 3,677,955 - CCNA_03521 0.30 -0.0 3,677,960 - CCNA_03521 0.31 -0.0 3,677,960 - CCNA_03521 0.31 +0.1 3,677,960 - CCNA_03521 0.31 +0.6 3,677,960 - CCNA_03521 0.31 +0.6 3,677,960 - CCNA_03521 0.31 +0.9 3,677,962 + CCNA_03521 0.31 +0.1 3,678,026 + CCNA_03521 0.39 -1.6 3,678,029 - CCNA_03521 0.39 +0.3 3,678,029 - CCNA_03521 0.39 -0.1 3,678,043 + CCNA_03521 0.41 +0.5 3,678,048 + CCNA_03521 0.41 -1.3 3,678,048 + CCNA_03521 0.41 -0.6 3,678,048 + CCNA_03521 0.41 +0.6 3,678,048 + CCNA_03521 0.41 +0.2 3,678,048 + CCNA_03521 0.41 -0.5 3,678,048 + CCNA_03521 0.41 +0.1 3,678,051 - CCNA_03521 0.42 +0.5 3,678,056 - CCNA_03521 0.42 +0.8 3,678,056 - CCNA_03521 0.42 +0.5 3,678,056 - CCNA_03521 0.42 -0.5 3,678,056 - CCNA_03521 0.42 -0.4 3,678,063 + CCNA_03521 0.43 -0.9 3,678,099 + CCNA_03521 0.48 +0.3 3,678,121 + CCNA_03521 0.50 -0.3 3,678,143 + CCNA_03521 0.53 +0.3 3,678,143 + CCNA_03521 0.53 -0.3 3,678,143 + CCNA_03521 0.53 +0.6 3,678,143 + CCNA_03521 0.53 +0.8 3,678,150 + CCNA_03521 0.54 +0.3 3,678,151 - CCNA_03521 0.54 -1.8 3,678,158 + CCNA_03521 0.55 +3.2 3,678,160 + CCNA_03521 0.55 +0.5 3,678,160 + CCNA_03521 0.55 -2.7 3,678,166 - CCNA_03521 0.56 -0.5 3,678,169 + CCNA_03521 0.56 +0.1 3,678,177 + CCNA_03521 0.57 +1.5 3,678,206 + CCNA_03521 0.60 +1.2 3,678,206 + CCNA_03521 0.60 -0.6 3,678,206 + CCNA_03521 0.60 +1.1 3,678,214 - CCNA_03521 0.61 -0.1 3,678,214 - CCNA_03521 0.61 +0.5 3,678,214 - CCNA_03521 0.61 -3.0 3,678,245 + CCNA_03521 0.65 +1.3 3,678,260 + CCNA_03521 0.67 -0.9 3,678,267 - CCNA_03521 0.68 +0.7 3,678,267 - CCNA_03521 0.68 +1.4 3,678,267 - CCNA_03521 0.68 -1.4 3,678,268 - CCNA_03521 0.68 -0.3 3,678,303 + CCNA_03521 0.72 +0.6 3,678,303 + CCNA_03521 0.72 -0.1 3,678,303 + CCNA_03521 0.72 +0.8 3,678,311 - CCNA_03521 0.73 -0.7 3,678,352 + CCNA_03521 0.78 -0.5 3,678,352 + CCNA_03521 0.78 -0.1 3,678,360 - CCNA_03521 0.79 +0.1 3,678,383 + CCNA_03521 0.81 +0.2 3,678,423 - CCNA_03521 0.86 -1.8 3,678,432 + CCNA_03521 0.87 -1.0 3,678,432 + CCNA_03521 0.87 +0.7 3,678,434 - CCNA_03521 0.88 -0.2 3,678,463 + +0.6 3,678,509 + +1.6 3,678,527 - +1.0 3,678,544 - -0.1 3,678,562 + +0.4 3,678,572 + -0.2 3,678,572 + +0.4 3,678,572 + +0.4 3,678,578 + +0.9 3,678,578 + +0.5 3,678,580 - -0.2 3,678,580 - +0.6 3,678,580 - -0.1 3,678,580 - +2.6 3,678,586 - +0.4 3,678,586 - +1.4 3,678,598 - -0.3 3,678,627 - +0.1 3,678,636 + +0.3 3,678,636 + +0.4 3,678,650 + +0.6 3,678,655 + -0.3 3,678,678 - -0.0 3,678,678 - -0.2 3,678,678 - +0.7 3,678,757 + +1.5 3,678,762 - +1.2 3,678,762 - +1.6 3,678,776 - -0.1 3,678,813 - +1.2 3,678,818 - -0.1 3,678,822 + +1.8 3,678,822 + +3.2 3,678,822 + +1.6 3,678,830 - +3.2 3,678,830 - +1.4 3,678,863 + +1.1 3,678,884 - CCNA_03522 0.10 +1.3 3,678,884 - CCNA_03522 0.10 +1.5 3,678,897 + CCNA_03522 0.11 +1.5 3,678,899 + CCNA_03522 0.11 +0.1 3,678,899 + CCNA_03522 0.11 +1.6 3,678,899 + CCNA_03522 0.11 +0.3 3,678,899 + CCNA_03522 0.11 +1.7 3,678,899 + CCNA_03522 0.11 +0.8 3,678,899 + CCNA_03522 0.11 +1.4 3,678,899 + CCNA_03522 0.11 +1.0 3,678,913 + CCNA_03522 0.12 +1.4 3,678,924 + CCNA_03522 0.13 +0.8 3,678,931 + CCNA_03522 0.14 +1.7 3,678,931 + CCNA_03522 0.14 +2.1 3,678,931 + CCNA_03522 0.14 +0.9 3,678,931 + CCNA_03522 0.14 +1.0 3,678,931 + CCNA_03522 0.14 +1.5 3,678,931 + CCNA_03522 0.14 +1.0 3,678,939 - CCNA_03522 0.14 +1.9 3,678,939 - CCNA_03522 0.14 +0.3 3,678,939 - CCNA_03522 0.14 +2.2 3,678,939 - CCNA_03522 0.14 +0.5 3,678,939 - CCNA_03522 0.14 -0.1 3,678,939 - CCNA_03522 0.14 +2.0 3,678,939 - CCNA_03522 0.14 +0.8 3,678,939 - CCNA_03522 0.14 +0.6 3,679,031 + CCNA_03522 0.21 +1.4 3,679,081 + CCNA_03522 0.24 +2.0 3,679,082 + CCNA_03522 0.24 +1.5 3,679,117 - CCNA_03522 0.27 +0.6 3,679,145 + CCNA_03522 0.29 +1.5 3,679,199 - CCNA_03522 0.32 -1.9 3,679,230 + CCNA_03522 0.34 +0.6 3,679,293 + CCNA_03522 0.39 +1.4 3,679,301 - CCNA_03522 0.39 +0.4 3,679,415 + CCNA_03522 0.47 +2.4 3,679,493 - CCNA_03522 0.53 +0.8 3,679,513 - CCNA_03522 0.54 +0.7 3,679,513 - CCNA_03522 0.54 +1.1 3,679,527 - CCNA_03522 0.55 -0.2 3,679,583 + CCNA_03522 0.59 +0.6 3,679,669 + CCNA_03522 0.65 -0.5 3,679,717 - CCNA_03522 0.68 +0.5 3,679,776 + CCNA_03522 0.72 +0.6 3,679,781 + CCNA_03522 0.73 +0.3 3,679,789 - CCNA_03522 0.73 +0.7 3,679,789 - CCNA_03522 0.73 -0.6 3,679,845 + CCNA_03522 0.77 +1.0 3,679,861 - CCNA_03522 0.78 +0.7 3,679,883 - CCNA_03522 0.80 -0.4 3,679,915 - CCNA_03522 0.82 +1.2 3,679,957 - CCNA_03522 0.85 -1.3 3,679,993 + CCNA_03522 0.88 -0.5 3,680,022 + CCNA_03522 0.90 +1.6 3,680,030 - +1.0 3,680,062 - +0.3 3,680,079 - +1.3 3,680,093 + +1.2 3,680,143 + +1.1 3,680,264 - +0.1 3,680,264 - -0.7 3,680,323 + +0.4 3,680,350 + +2.7 3,680,381 + +1.1 3,680,381 + -1.9 3,680,389 - CCNA_03523 0.11 -0.6 3,680,401 + CCNA_03523 0.13 +0.7 3,680,409 - CCNA_03523 0.15 -0.9 3,680,409 - CCNA_03523 0.15 +0.3 3,680,416 + CCNA_03523 0.16 +0.7 3,680,416 - CCNA_03523 0.16 +0.4 3,680,439 + CCNA_03523 0.21 -1.0 3,680,439 + CCNA_03523 0.21 +0.4 3,680,447 - CCNA_03523 0.22 -0.2 3,680,447 - CCNA_03523 0.22 +1.0 3,680,449 + CCNA_03523 0.23 +0.5 3,680,454 + CCNA_03523 0.24 +0.8 3,680,499 + CCNA_03523 0.33 -1.3 3,680,502 + CCNA_03523 0.33 -0.3 3,680,517 - CCNA_03523 0.36 +1.2 3,680,535 + CCNA_03523 0.40 -0.5 3,680,536 - CCNA_03523 0.40 +0.2 3,680,536 - CCNA_03523 0.40 +0.2 3,680,536 - CCNA_03523 0.40 +0.2 3,680,543 - CCNA_03523 0.42 +2.5 3,680,543 - CCNA_03523 0.42 +2.2 3,680,543 - CCNA_03523 0.42 +1.0 3,680,574 + CCNA_03523 0.48 +0.3 3,680,624 + CCNA_03523 0.58 +0.2 3,680,632 - CCNA_03523 0.59 -1.0 3,680,632 - CCNA_03523 0.59 +0.7 3,680,657 - CCNA_03523 0.64 -1.3 3,680,668 - CCNA_03523 0.67 -0.0 3,680,738 - CCNA_03523 0.81 -0.2 3,680,738 - CCNA_03523 0.81 +0.6 3,680,738 - CCNA_03523 0.81 +0.7 3,680,740 + CCNA_03523 0.81 +1.5 3,680,743 - CCNA_03523 0.82 +1.1 3,680,748 - CCNA_03523 0.83 +1.2 3,680,748 - +5.2 3,680,748 - CCNA_03523 0.83 -1.5 3,680,762 - CCNA_03523 0.86 +1.0 3,680,781 - CCNA_03523 0.89 -0.1 3,680,792 + +0.7 3,680,792 + -1.0 3,680,800 - +0.5 3,680,894 + +0.7 3,680,902 - +1.1 3,680,902 - -0.4 3,680,902 - -0.9 3,680,964 + +1.5 3,680,969 + +1.4 3,681,042 + -0.1 3,681,043 - +0.4 3,681,050 - +0.3 3,681,050 - +0.7 3,681,066 - +0.7 3,681,078 + -0.5 3,681,085 - +0.9 3,681,114 - +0.8 3,681,119 + +0.7 3,681,127 - +0.5
Or see this region's nucleotide sequence