Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03522

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03521 and CCNA_03522 are separated by 197 nucleotidesCCNA_03522 and CCNA_03523 are separated by 164 nucleotidesCCNA_03523 and CCNA_03524 are separated by 287 nucleotides CCNA_03521: CCNA_03521 - pectin lyase-related protein, at 3,677,701 to 3,678,537 _03521 CCNA_03522: CCNA_03522 - Zn-dependent protease TldD, at 3,678,735 to 3,680,171 _03522 CCNA_03523: CCNA_03523 - acetyltransferase, GNAT superfamily, at 3,680,336 to 3,680,833 _03523 CCNA_03524: CCNA_03524 - di-/tripeptide transporter, at 3,681,121 to 3,683,001 _03524 Position (kb) 3678 3679 3680 3681Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 3677.783 kb on - strandat 3677.807 kb on + strand, within CCNA_03521at 3677.807 kb on + strand, within CCNA_03521at 3677.807 kb on + strand, within CCNA_03521at 3677.807 kb on + strand, within CCNA_03521at 3677.807 kb on + strand, within CCNA_03521at 3677.807 kb on + strand, within CCNA_03521at 3677.815 kb on - strand, within CCNA_03521at 3677.815 kb on - strand, within CCNA_03521at 3677.815 kb on - strand, within CCNA_03521at 3677.821 kb on + strand, within CCNA_03521at 3677.826 kb on + strand, within CCNA_03521at 3677.829 kb on - strand, within CCNA_03521at 3677.880 kb on + strand, within CCNA_03521at 3677.880 kb on + strand, within CCNA_03521at 3677.889 kb on + strand, within CCNA_03521at 3677.897 kb on - strand, within CCNA_03521at 3677.952 kb on + strand, within CCNA_03521at 3677.955 kb on - strand, within CCNA_03521at 3677.960 kb on - strand, within CCNA_03521at 3677.960 kb on - strand, within CCNA_03521at 3677.960 kb on - strand, within CCNA_03521at 3677.960 kb on - strand, within CCNA_03521at 3677.960 kb on - strand, within CCNA_03521at 3677.962 kb on + strand, within CCNA_03521at 3678.026 kb on + strand, within CCNA_03521at 3678.029 kb on - strand, within CCNA_03521at 3678.029 kb on - strand, within CCNA_03521at 3678.043 kb on + strand, within CCNA_03521at 3678.048 kb on + strand, within CCNA_03521at 3678.048 kb on + strand, within CCNA_03521at 3678.048 kb on + strand, within CCNA_03521at 3678.048 kb on + strand, within CCNA_03521at 3678.048 kb on + strand, within CCNA_03521at 3678.048 kb on + strand, within CCNA_03521at 3678.051 kb on - strand, within CCNA_03521at 3678.056 kb on - strand, within CCNA_03521at 3678.056 kb on - strand, within CCNA_03521at 3678.056 kb on - strand, within CCNA_03521at 3678.056 kb on - strand, within CCNA_03521at 3678.063 kb on + strand, within CCNA_03521at 3678.099 kb on + strand, within CCNA_03521at 3678.121 kb on + strand, within CCNA_03521at 3678.143 kb on + strand, within CCNA_03521at 3678.143 kb on + strand, within CCNA_03521at 3678.143 kb on + strand, within CCNA_03521at 3678.143 kb on + strand, within CCNA_03521at 3678.150 kb on + strand, within CCNA_03521at 3678.151 kb on - strand, within CCNA_03521at 3678.158 kb on + strand, within CCNA_03521at 3678.160 kb on + strand, within CCNA_03521at 3678.160 kb on + strand, within CCNA_03521at 3678.166 kb on - strand, within CCNA_03521at 3678.169 kb on + strand, within CCNA_03521at 3678.177 kb on + strand, within CCNA_03521at 3678.206 kb on + strand, within CCNA_03521at 3678.206 kb on + strand, within CCNA_03521at 3678.206 kb on + strand, within CCNA_03521at 3678.214 kb on - strand, within CCNA_03521at 3678.214 kb on - strand, within CCNA_03521at 3678.214 kb on - strand, within CCNA_03521at 3678.245 kb on + strand, within CCNA_03521at 3678.260 kb on + strand, within CCNA_03521at 3678.267 kb on - strand, within CCNA_03521at 3678.267 kb on - strand, within CCNA_03521at 3678.267 kb on - strand, within CCNA_03521at 3678.268 kb on - strand, within CCNA_03521at 3678.303 kb on + strand, within CCNA_03521at 3678.303 kb on + strand, within CCNA_03521at 3678.303 kb on + strand, within CCNA_03521at 3678.311 kb on - strand, within CCNA_03521at 3678.352 kb on + strand, within CCNA_03521at 3678.352 kb on + strand, within CCNA_03521at 3678.360 kb on - strand, within CCNA_03521at 3678.383 kb on + strand, within CCNA_03521at 3678.423 kb on - strand, within CCNA_03521at 3678.432 kb on + strand, within CCNA_03521at 3678.432 kb on + strand, within CCNA_03521at 3678.434 kb on - strand, within CCNA_03521at 3678.463 kb on + strandat 3678.509 kb on + strandat 3678.527 kb on - strandat 3678.544 kb on - strandat 3678.562 kb on + strandat 3678.572 kb on + strandat 3678.572 kb on + strandat 3678.572 kb on + strandat 3678.578 kb on + strandat 3678.578 kb on + strandat 3678.580 kb on - strandat 3678.580 kb on - strandat 3678.580 kb on - strandat 3678.580 kb on - strandat 3678.586 kb on - strandat 3678.586 kb on - strandat 3678.598 kb on - strandat 3678.627 kb on - strandat 3678.636 kb on + strandat 3678.636 kb on + strandat 3678.650 kb on + strandat 3678.655 kb on + strandat 3678.678 kb on - strandat 3678.678 kb on - strandat 3678.678 kb on - strandat 3678.757 kb on + strandat 3678.762 kb on - strandat 3678.762 kb on - strandat 3678.776 kb on - strandat 3678.813 kb on - strandat 3678.818 kb on - strandat 3678.822 kb on + strandat 3678.822 kb on + strandat 3678.822 kb on + strandat 3678.830 kb on - strandat 3678.830 kb on - strandat 3678.863 kb on + strandat 3678.884 kb on - strand, within CCNA_03522at 3678.884 kb on - strand, within CCNA_03522at 3678.897 kb on + strand, within CCNA_03522at 3678.899 kb on + strand, within CCNA_03522at 3678.899 kb on + strand, within CCNA_03522at 3678.899 kb on + strand, within CCNA_03522at 3678.899 kb on + strand, within CCNA_03522at 3678.899 kb on + strand, within CCNA_03522at 3678.899 kb on + strand, within CCNA_03522at 3678.899 kb on + strand, within CCNA_03522at 3678.913 kb on + strand, within CCNA_03522at 3678.924 kb on + strand, within CCNA_03522at 3678.931 kb on + strand, within CCNA_03522at 3678.931 kb on + strand, within CCNA_03522at 3678.931 kb on + strand, within CCNA_03522at 3678.931 kb on + strand, within CCNA_03522at 3678.931 kb on + strand, within CCNA_03522at 3678.931 kb on + strand, within CCNA_03522at 3678.939 kb on - strand, within CCNA_03522at 3678.939 kb on - strand, within CCNA_03522at 3678.939 kb on - strand, within CCNA_03522at 3678.939 kb on - strand, within CCNA_03522at 3678.939 kb on - strand, within CCNA_03522at 3678.939 kb on - strand, within CCNA_03522at 3678.939 kb on - strand, within CCNA_03522at 3678.939 kb on - strand, within CCNA_03522at 3679.031 kb on + strand, within CCNA_03522at 3679.081 kb on + strand, within CCNA_03522at 3679.082 kb on + strand, within CCNA_03522at 3679.117 kb on - strand, within CCNA_03522at 3679.145 kb on + strand, within CCNA_03522at 3679.199 kb on - strand, within CCNA_03522at 3679.230 kb on + strand, within CCNA_03522at 3679.293 kb on + strand, within CCNA_03522at 3679.301 kb on - strand, within CCNA_03522at 3679.415 kb on + strand, within CCNA_03522at 3679.493 kb on - strand, within CCNA_03522at 3679.513 kb on - strand, within CCNA_03522at 3679.513 kb on - strand, within CCNA_03522at 3679.527 kb on - strand, within CCNA_03522at 3679.583 kb on + strand, within CCNA_03522at 3679.669 kb on + strand, within CCNA_03522at 3679.717 kb on - strand, within CCNA_03522at 3679.776 kb on + strand, within CCNA_03522at 3679.781 kb on + strand, within CCNA_03522at 3679.789 kb on - strand, within CCNA_03522at 3679.789 kb on - strand, within CCNA_03522at 3679.845 kb on + strand, within CCNA_03522at 3679.861 kb on - strand, within CCNA_03522at 3679.883 kb on - strand, within CCNA_03522at 3679.915 kb on - strand, within CCNA_03522at 3679.957 kb on - strand, within CCNA_03522at 3679.993 kb on + strand, within CCNA_03522at 3680.022 kb on + strand, within CCNA_03522at 3680.030 kb on - strandat 3680.062 kb on - strandat 3680.079 kb on - strandat 3680.093 kb on + strandat 3680.143 kb on + strandat 3680.264 kb on - strandat 3680.264 kb on - strandat 3680.323 kb on + strandat 3680.350 kb on + strandat 3680.381 kb on + strandat 3680.381 kb on + strandat 3680.389 kb on - strand, within CCNA_03523at 3680.401 kb on + strand, within CCNA_03523at 3680.409 kb on - strand, within CCNA_03523at 3680.409 kb on - strand, within CCNA_03523at 3680.416 kb on + strand, within CCNA_03523at 3680.416 kb on - strand, within CCNA_03523at 3680.439 kb on + strand, within CCNA_03523at 3680.439 kb on + strand, within CCNA_03523at 3680.447 kb on - strand, within CCNA_03523at 3680.447 kb on - strand, within CCNA_03523at 3680.449 kb on + strand, within CCNA_03523at 3680.454 kb on + strand, within CCNA_03523at 3680.499 kb on + strand, within CCNA_03523at 3680.502 kb on + strand, within CCNA_03523at 3680.517 kb on - strand, within CCNA_03523at 3680.535 kb on + strand, within CCNA_03523at 3680.536 kb on - strand, within CCNA_03523at 3680.536 kb on - strand, within CCNA_03523at 3680.536 kb on - strand, within CCNA_03523at 3680.543 kb on - strand, within CCNA_03523at 3680.543 kb on - strand, within CCNA_03523at 3680.543 kb on - strand, within CCNA_03523at 3680.574 kb on + strand, within CCNA_03523at 3680.624 kb on + strand, within CCNA_03523at 3680.632 kb on - strand, within CCNA_03523at 3680.632 kb on - strand, within CCNA_03523at 3680.657 kb on - strand, within CCNA_03523at 3680.668 kb on - strand, within CCNA_03523at 3680.738 kb on - strand, within CCNA_03523at 3680.738 kb on - strand, within CCNA_03523at 3680.738 kb on - strand, within CCNA_03523at 3680.740 kb on + strand, within CCNA_03523at 3680.743 kb on - strand, within CCNA_03523at 3680.748 kb on - strand, within CCNA_03523at 3680.748 kb on - strandat 3680.748 kb on - strand, within CCNA_03523at 3680.762 kb on - strand, within CCNA_03523at 3680.781 kb on - strand, within CCNA_03523at 3680.792 kb on + strandat 3680.792 kb on + strandat 3680.800 kb on - strandat 3680.894 kb on + strandat 3680.902 kb on - strandat 3680.902 kb on - strandat 3680.902 kb on - strandat 3680.964 kb on + strandat 3680.969 kb on + strandat 3681.042 kb on + strandat 3681.043 kb on - strandat 3681.050 kb on - strandat 3681.050 kb on - strandat 3681.066 kb on - strandat 3681.078 kb on + strandat 3681.085 kb on - strandat 3681.114 kb on - strandat 3681.119 kb on + strandat 3681.127 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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3,677,783 - -0.5
3,677,807 + CCNA_03521 0.13 -0.1
3,677,807 + CCNA_03521 0.13 +0.1
3,677,807 + CCNA_03521 0.13 -2.4
3,677,807 + CCNA_03521 0.13 +1.7
3,677,807 + CCNA_03521 0.13 +0.9
3,677,807 + CCNA_03521 0.13 -0.6
3,677,815 - CCNA_03521 0.14 -0.7
3,677,815 - CCNA_03521 0.14 -0.9
3,677,815 - CCNA_03521 0.14 +0.6
3,677,821 + CCNA_03521 0.14 -1.4
3,677,826 + CCNA_03521 0.15 +1.0
3,677,829 - CCNA_03521 0.15 -1.7
3,677,880 + CCNA_03521 0.21 -1.1
3,677,880 + CCNA_03521 0.21 -0.4
3,677,889 + CCNA_03521 0.22 -1.1
3,677,897 - CCNA_03521 0.23 -2.2
3,677,952 + CCNA_03521 0.30 -0.1
3,677,955 - CCNA_03521 0.30 -0.0
3,677,960 - CCNA_03521 0.31 -0.0
3,677,960 - CCNA_03521 0.31 +0.1
3,677,960 - CCNA_03521 0.31 +0.6
3,677,960 - CCNA_03521 0.31 +0.6
3,677,960 - CCNA_03521 0.31 +0.9
3,677,962 + CCNA_03521 0.31 +0.1
3,678,026 + CCNA_03521 0.39 -1.6
3,678,029 - CCNA_03521 0.39 +0.3
3,678,029 - CCNA_03521 0.39 -0.1
3,678,043 + CCNA_03521 0.41 +0.5
3,678,048 + CCNA_03521 0.41 -1.3
3,678,048 + CCNA_03521 0.41 -0.6
3,678,048 + CCNA_03521 0.41 +0.6
3,678,048 + CCNA_03521 0.41 +0.2
3,678,048 + CCNA_03521 0.41 -0.5
3,678,048 + CCNA_03521 0.41 +0.1
3,678,051 - CCNA_03521 0.42 +0.5
3,678,056 - CCNA_03521 0.42 +0.8
3,678,056 - CCNA_03521 0.42 +0.5
3,678,056 - CCNA_03521 0.42 -0.5
3,678,056 - CCNA_03521 0.42 -0.4
3,678,063 + CCNA_03521 0.43 -0.9
3,678,099 + CCNA_03521 0.48 +0.3
3,678,121 + CCNA_03521 0.50 -0.3
3,678,143 + CCNA_03521 0.53 +0.3
3,678,143 + CCNA_03521 0.53 -0.3
3,678,143 + CCNA_03521 0.53 +0.6
3,678,143 + CCNA_03521 0.53 +0.8
3,678,150 + CCNA_03521 0.54 +0.3
3,678,151 - CCNA_03521 0.54 -1.8
3,678,158 + CCNA_03521 0.55 +3.2
3,678,160 + CCNA_03521 0.55 +0.5
3,678,160 + CCNA_03521 0.55 -2.7
3,678,166 - CCNA_03521 0.56 -0.5
3,678,169 + CCNA_03521 0.56 +0.1
3,678,177 + CCNA_03521 0.57 +1.5
3,678,206 + CCNA_03521 0.60 +1.2
3,678,206 + CCNA_03521 0.60 -0.6
3,678,206 + CCNA_03521 0.60 +1.1
3,678,214 - CCNA_03521 0.61 -0.1
3,678,214 - CCNA_03521 0.61 +0.5
3,678,214 - CCNA_03521 0.61 -3.0
3,678,245 + CCNA_03521 0.65 +1.3
3,678,260 + CCNA_03521 0.67 -0.9
3,678,267 - CCNA_03521 0.68 +0.7
3,678,267 - CCNA_03521 0.68 +1.4
3,678,267 - CCNA_03521 0.68 -1.4
3,678,268 - CCNA_03521 0.68 -0.3
3,678,303 + CCNA_03521 0.72 +0.6
3,678,303 + CCNA_03521 0.72 -0.1
3,678,303 + CCNA_03521 0.72 +0.8
3,678,311 - CCNA_03521 0.73 -0.7
3,678,352 + CCNA_03521 0.78 -0.5
3,678,352 + CCNA_03521 0.78 -0.1
3,678,360 - CCNA_03521 0.79 +0.1
3,678,383 + CCNA_03521 0.81 +0.2
3,678,423 - CCNA_03521 0.86 -1.8
3,678,432 + CCNA_03521 0.87 -1.0
3,678,432 + CCNA_03521 0.87 +0.7
3,678,434 - CCNA_03521 0.88 -0.2
3,678,463 + +0.6
3,678,509 + +1.6
3,678,527 - +1.0
3,678,544 - -0.1
3,678,562 + +0.4
3,678,572 + -0.2
3,678,572 + +0.4
3,678,572 + +0.4
3,678,578 + +0.9
3,678,578 + +0.5
3,678,580 - -0.2
3,678,580 - +0.6
3,678,580 - -0.1
3,678,580 - +2.6
3,678,586 - +0.4
3,678,586 - +1.4
3,678,598 - -0.3
3,678,627 - +0.1
3,678,636 + +0.3
3,678,636 + +0.4
3,678,650 + +0.6
3,678,655 + -0.3
3,678,678 - -0.0
3,678,678 - -0.2
3,678,678 - +0.7
3,678,757 + +1.5
3,678,762 - +1.2
3,678,762 - +1.6
3,678,776 - -0.1
3,678,813 - +1.2
3,678,818 - -0.1
3,678,822 + +1.8
3,678,822 + +3.2
3,678,822 + +1.6
3,678,830 - +3.2
3,678,830 - +1.4
3,678,863 + +1.1
3,678,884 - CCNA_03522 0.10 +1.3
3,678,884 - CCNA_03522 0.10 +1.5
3,678,897 + CCNA_03522 0.11 +1.5
3,678,899 + CCNA_03522 0.11 +0.1
3,678,899 + CCNA_03522 0.11 +1.6
3,678,899 + CCNA_03522 0.11 +0.3
3,678,899 + CCNA_03522 0.11 +1.7
3,678,899 + CCNA_03522 0.11 +0.8
3,678,899 + CCNA_03522 0.11 +1.4
3,678,899 + CCNA_03522 0.11 +1.0
3,678,913 + CCNA_03522 0.12 +1.4
3,678,924 + CCNA_03522 0.13 +0.8
3,678,931 + CCNA_03522 0.14 +1.7
3,678,931 + CCNA_03522 0.14 +2.1
3,678,931 + CCNA_03522 0.14 +0.9
3,678,931 + CCNA_03522 0.14 +1.0
3,678,931 + CCNA_03522 0.14 +1.5
3,678,931 + CCNA_03522 0.14 +1.0
3,678,939 - CCNA_03522 0.14 +1.9
3,678,939 - CCNA_03522 0.14 +0.3
3,678,939 - CCNA_03522 0.14 +2.2
3,678,939 - CCNA_03522 0.14 +0.5
3,678,939 - CCNA_03522 0.14 -0.1
3,678,939 - CCNA_03522 0.14 +2.0
3,678,939 - CCNA_03522 0.14 +0.8
3,678,939 - CCNA_03522 0.14 +0.6
3,679,031 + CCNA_03522 0.21 +1.4
3,679,081 + CCNA_03522 0.24 +2.0
3,679,082 + CCNA_03522 0.24 +1.5
3,679,117 - CCNA_03522 0.27 +0.6
3,679,145 + CCNA_03522 0.29 +1.5
3,679,199 - CCNA_03522 0.32 -1.9
3,679,230 + CCNA_03522 0.34 +0.6
3,679,293 + CCNA_03522 0.39 +1.4
3,679,301 - CCNA_03522 0.39 +0.4
3,679,415 + CCNA_03522 0.47 +2.4
3,679,493 - CCNA_03522 0.53 +0.8
3,679,513 - CCNA_03522 0.54 +0.7
3,679,513 - CCNA_03522 0.54 +1.1
3,679,527 - CCNA_03522 0.55 -0.2
3,679,583 + CCNA_03522 0.59 +0.6
3,679,669 + CCNA_03522 0.65 -0.5
3,679,717 - CCNA_03522 0.68 +0.5
3,679,776 + CCNA_03522 0.72 +0.6
3,679,781 + CCNA_03522 0.73 +0.3
3,679,789 - CCNA_03522 0.73 +0.7
3,679,789 - CCNA_03522 0.73 -0.6
3,679,845 + CCNA_03522 0.77 +1.0
3,679,861 - CCNA_03522 0.78 +0.7
3,679,883 - CCNA_03522 0.80 -0.4
3,679,915 - CCNA_03522 0.82 +1.2
3,679,957 - CCNA_03522 0.85 -1.3
3,679,993 + CCNA_03522 0.88 -0.5
3,680,022 + CCNA_03522 0.90 +1.6
3,680,030 - +1.0
3,680,062 - +0.3
3,680,079 - +1.3
3,680,093 + +1.2
3,680,143 + +1.1
3,680,264 - +0.1
3,680,264 - -0.7
3,680,323 + +0.4
3,680,350 + +2.7
3,680,381 + +1.1
3,680,381 + -1.9
3,680,389 - CCNA_03523 0.11 -0.6
3,680,401 + CCNA_03523 0.13 +0.7
3,680,409 - CCNA_03523 0.15 -0.9
3,680,409 - CCNA_03523 0.15 +0.3
3,680,416 + CCNA_03523 0.16 +0.7
3,680,416 - CCNA_03523 0.16 +0.4
3,680,439 + CCNA_03523 0.21 -1.0
3,680,439 + CCNA_03523 0.21 +0.4
3,680,447 - CCNA_03523 0.22 -0.2
3,680,447 - CCNA_03523 0.22 +1.0
3,680,449 + CCNA_03523 0.23 +0.5
3,680,454 + CCNA_03523 0.24 +0.8
3,680,499 + CCNA_03523 0.33 -1.3
3,680,502 + CCNA_03523 0.33 -0.3
3,680,517 - CCNA_03523 0.36 +1.2
3,680,535 + CCNA_03523 0.40 -0.5
3,680,536 - CCNA_03523 0.40 +0.2
3,680,536 - CCNA_03523 0.40 +0.2
3,680,536 - CCNA_03523 0.40 +0.2
3,680,543 - CCNA_03523 0.42 +2.5
3,680,543 - CCNA_03523 0.42 +2.2
3,680,543 - CCNA_03523 0.42 +1.0
3,680,574 + CCNA_03523 0.48 +0.3
3,680,624 + CCNA_03523 0.58 +0.2
3,680,632 - CCNA_03523 0.59 -1.0
3,680,632 - CCNA_03523 0.59 +0.7
3,680,657 - CCNA_03523 0.64 -1.3
3,680,668 - CCNA_03523 0.67 -0.0
3,680,738 - CCNA_03523 0.81 -0.2
3,680,738 - CCNA_03523 0.81 +0.6
3,680,738 - CCNA_03523 0.81 +0.7
3,680,740 + CCNA_03523 0.81 +1.5
3,680,743 - CCNA_03523 0.82 +1.1
3,680,748 - CCNA_03523 0.83 +1.2
3,680,748 - +5.2
3,680,748 - CCNA_03523 0.83 -1.5
3,680,762 - CCNA_03523 0.86 +1.0
3,680,781 - CCNA_03523 0.89 -0.1
3,680,792 + +0.7
3,680,792 + -1.0
3,680,800 - +0.5
3,680,894 + +0.7
3,680,902 - +1.1
3,680,902 - -0.4
3,680,902 - -0.9
3,680,964 + +1.5
3,680,969 + +1.4
3,681,042 + -0.1
3,681,043 - +0.4
3,681,050 - +0.3
3,681,050 - +0.7
3,681,066 - +0.7
3,681,078 + -0.5
3,681,085 - +0.9
3,681,114 - +0.8
3,681,119 + +0.7
3,681,127 - +0.5

Or see this region's nucleotide sequence