Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02430

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02427 and CCNA_02428 are separated by 7 nucleotidesCCNA_02428 and CCNA_02429 are separated by 96 nucleotidesCCNA_02429 and CCNA_02430 are separated by 2 nucleotidesCCNA_02430 and CCNA_02431 are separated by 21 nucleotides CCNA_02427: CCNA_02427 - septum formation protein Maf, at 2,570,061 to 2,570,666 _02427 CCNA_02428: CCNA_02428 - translation initiation factor 1 (IF-1), at 2,570,674 to 2,570,892 _02428 CCNA_02429: CCNA_02429 - arsenate reductase, at 2,570,989 to 2,571,447 _02429 CCNA_02430: CCNA_02430 - conserved hypothetical cytosolic protein, at 2,571,450 to 2,571,929 _02430 CCNA_02431: CCNA_02431 - histidinol dehydrogenase, at 2,571,951 to 2,573,237 _02431 Position (kb) 2571 2572Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2570.469 kb on - strand, within CCNA_02427at 2570.475 kb on - strand, within CCNA_02427at 2570.548 kb on + strand, within CCNA_02427at 2570.562 kb on - strand, within CCNA_02427at 2570.583 kb on + strand, within CCNA_02427at 2570.627 kb on - strandat 2570.950 kb on - strandat 2570.978 kb on + strandat 2570.986 kb on - strandat 2570.994 kb on - strandat 2571.036 kb on + strand, within CCNA_02429at 2571.036 kb on + strand, within CCNA_02429at 2571.054 kb on - strand, within CCNA_02429at 2571.161 kb on + strand, within CCNA_02429at 2571.161 kb on + strand, within CCNA_02429at 2571.186 kb on + strand, within CCNA_02429at 2571.211 kb on + strand, within CCNA_02429at 2571.212 kb on + strand, within CCNA_02429at 2571.212 kb on + strand, within CCNA_02429at 2571.220 kb on - strand, within CCNA_02429at 2571.220 kb on - strand, within CCNA_02429at 2571.220 kb on - strand, within CCNA_02429at 2571.220 kb on - strand, within CCNA_02429at 2571.231 kb on + strand, within CCNA_02429at 2571.239 kb on - strand, within CCNA_02429at 2571.239 kb on - strand, within CCNA_02429at 2571.243 kb on + strand, within CCNA_02429at 2571.251 kb on - strand, within CCNA_02429at 2571.258 kb on + strand, within CCNA_02429at 2571.260 kb on - strand, within CCNA_02429at 2571.266 kb on - strand, within CCNA_02429at 2571.291 kb on + strand, within CCNA_02429at 2571.304 kb on - strand, within CCNA_02429at 2571.312 kb on + strand, within CCNA_02429at 2571.312 kb on + strand, within CCNA_02429at 2571.320 kb on - strand, within CCNA_02429at 2571.325 kb on - strand, within CCNA_02429at 2571.325 kb on - strand, within CCNA_02429at 2571.333 kb on + strand, within CCNA_02429at 2571.338 kb on + strand, within CCNA_02429at 2571.346 kb on - strand, within CCNA_02429at 2571.346 kb on - strand, within CCNA_02429at 2571.362 kb on + strand, within CCNA_02429at 2571.362 kb on + strand, within CCNA_02429at 2571.413 kb on + strandat 2571.447 kb on + strandat 2571.457 kb on + strandat 2571.465 kb on - strandat 2571.474 kb on + strandat 2571.477 kb on - strandat 2571.479 kb on + strandat 2571.482 kb on - strandat 2571.482 kb on - strandat 2571.482 kb on - strandat 2571.507 kb on - strand, within CCNA_02430at 2571.511 kb on + strand, within CCNA_02430at 2571.511 kb on + strand, within CCNA_02430at 2571.511 kb on + strand, within CCNA_02430at 2571.511 kb on + strand, within CCNA_02430at 2571.511 kb on + strand, within CCNA_02430at 2571.519 kb on - strand, within CCNA_02430at 2571.519 kb on - strand, within CCNA_02430at 2571.544 kb on + strand, within CCNA_02430at 2571.553 kb on - strand, within CCNA_02430at 2571.561 kb on + strand, within CCNA_02430at 2571.582 kb on + strand, within CCNA_02430at 2571.590 kb on - strand, within CCNA_02430at 2571.590 kb on - strand, within CCNA_02430at 2571.602 kb on - strand, within CCNA_02430at 2571.610 kb on + strand, within CCNA_02430at 2571.627 kb on + strand, within CCNA_02430at 2571.710 kb on - strand, within CCNA_02430at 2571.723 kb on + strand, within CCNA_02430at 2571.771 kb on - strand, within CCNA_02430at 2571.799 kb on - strand, within CCNA_02430at 2571.805 kb on + strand, within CCNA_02430at 2571.805 kb on + strand, within CCNA_02430at 2571.813 kb on - strand, within CCNA_02430at 2571.813 kb on - strand, within CCNA_02430at 2571.813 kb on - strand, within CCNA_02430at 2571.842 kb on + strand, within CCNA_02430at 2571.898 kb on + strandat 2571.982 kb on + strandat 2571.982 kb on + strandat 2571.990 kb on - strandat 2571.990 kb on - strandat 2572.002 kb on + strandat 2572.009 kb on + strandat 2572.009 kb on + strandat 2572.010 kb on - strandat 2572.011 kb on - strandat 2572.011 kb on - strandat 2572.011 kb on - strandat 2572.022 kb on - strandat 2572.092 kb on + strand, within CCNA_02431at 2572.100 kb on - strand, within CCNA_02431at 2572.111 kb on + strand, within CCNA_02431at 2572.119 kb on - strand, within CCNA_02431at 2572.119 kb on - strand, within CCNA_02431at 2572.157 kb on - strand, within CCNA_02431at 2572.184 kb on - strand, within CCNA_02431at 2572.202 kb on - strand, within CCNA_02431at 2572.236 kb on + strand, within CCNA_02431at 2572.287 kb on + strand, within CCNA_02431at 2572.292 kb on + strand, within CCNA_02431at 2572.295 kb on - strand, within CCNA_02431at 2572.300 kb on - strand, within CCNA_02431at 2572.300 kb on - strand, within CCNA_02431at 2572.322 kb on + strand, within CCNA_02431at 2572.363 kb on + strand, within CCNA_02431at 2572.364 kb on - strand, within CCNA_02431at 2572.375 kb on + strand, within CCNA_02431at 2572.375 kb on + strand, within CCNA_02431at 2572.375 kb on + strand, within CCNA_02431at 2572.375 kb on + strand, within CCNA_02431at 2572.375 kb on + strand, within CCNA_02431at 2572.375 kb on + strand, within CCNA_02431at 2572.375 kb on + strand, within CCNA_02431at 2572.383 kb on - strand, within CCNA_02431at 2572.383 kb on - strand, within CCNA_02431at 2572.383 kb on - strand, within CCNA_02431at 2572.383 kb on - strand, within CCNA_02431at 2572.383 kb on - strand, within CCNA_02431at 2572.390 kb on + strand, within CCNA_02431at 2572.398 kb on - strand, within CCNA_02431at 2572.398 kb on - strand, within CCNA_02431at 2572.398 kb on - strand, within CCNA_02431at 2572.398 kb on - strand, within CCNA_02431at 2572.398 kb on - strand, within CCNA_02431at 2572.434 kb on + strand, within CCNA_02431at 2572.479 kb on - strand, within CCNA_02431at 2572.489 kb on - strand, within CCNA_02431at 2572.540 kb on - strand, within CCNA_02431at 2572.578 kb on - strand, within CCNA_02431at 2572.605 kb on - strand, within CCNA_02431at 2572.651 kb on + strand, within CCNA_02431at 2572.651 kb on + strand, within CCNA_02431at 2572.659 kb on - strand, within CCNA_02431at 2572.664 kb on - strand, within CCNA_02431at 2572.679 kb on - strand, within CCNA_02431at 2572.752 kb on - strand, within CCNA_02431at 2572.775 kb on + strand, within CCNA_02431at 2572.789 kb on + strand, within CCNA_02431at 2572.797 kb on - strand, within CCNA_02431at 2572.809 kb on + strand, within CCNA_02431at 2572.812 kb on - strand, within CCNA_02431at 2572.812 kb on - strand, within CCNA_02431at 2572.819 kb on + strand, within CCNA_02431at 2572.832 kb on - strand, within CCNA_02431at 2572.858 kb on - strand, within CCNA_02431at 2572.872 kb on - strand, within CCNA_02431at 2572.874 kb on - strand, within CCNA_02431at 2572.912 kb on + strand, within CCNA_02431at 2572.920 kb on - strand, within CCNA_02431at 2572.920 kb on - strand, within CCNA_02431at 2572.920 kb on - strand, within CCNA_02431

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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2,570,469 - CCNA_02427 0.67 +1.4
2,570,475 - CCNA_02427 0.68 +0.2
2,570,548 + CCNA_02427 0.80 -1.2
2,570,562 - CCNA_02427 0.83 +0.7
2,570,583 + CCNA_02427 0.86 +0.1
2,570,627 - +0.6
2,570,950 - +1.6
2,570,978 + +0.2
2,570,986 - -0.0
2,570,994 - -0.0
2,571,036 + CCNA_02429 0.10 +0.2
2,571,036 + CCNA_02429 0.10 +1.7
2,571,054 - CCNA_02429 0.14 +2.0
2,571,161 + CCNA_02429 0.37 -0.7
2,571,161 + CCNA_02429 0.37 -0.1
2,571,186 + CCNA_02429 0.43 +1.3
2,571,211 + CCNA_02429 0.48 +2.0
2,571,212 + CCNA_02429 0.49 -0.3
2,571,212 + CCNA_02429 0.49 -1.3
2,571,220 - CCNA_02429 0.50 +1.5
2,571,220 - CCNA_02429 0.50 -0.8
2,571,220 - CCNA_02429 0.50 +0.2
2,571,220 - CCNA_02429 0.50 +1.4
2,571,231 + CCNA_02429 0.53 +0.9
2,571,239 - CCNA_02429 0.54 +1.0
2,571,239 - CCNA_02429 0.54 -0.5
2,571,243 + CCNA_02429 0.55 -1.2
2,571,251 - CCNA_02429 0.57 +0.4
2,571,258 + CCNA_02429 0.59 +0.9
2,571,260 - CCNA_02429 0.59 +1.5
2,571,266 - CCNA_02429 0.60 +1.0
2,571,291 + CCNA_02429 0.66 -0.4
2,571,304 - CCNA_02429 0.69 +1.4
2,571,312 + CCNA_02429 0.70 +0.8
2,571,312 + CCNA_02429 0.70 -3.4
2,571,320 - CCNA_02429 0.72 +1.9
2,571,325 - CCNA_02429 0.73 +2.1
2,571,325 - CCNA_02429 0.73 +0.0
2,571,333 + CCNA_02429 0.75 -1.5
2,571,338 + CCNA_02429 0.76 -0.6
2,571,346 - CCNA_02429 0.78 +0.1
2,571,346 - CCNA_02429 0.78 +1.4
2,571,362 + CCNA_02429 0.81 +1.0
2,571,362 + CCNA_02429 0.81 -2.7
2,571,413 + -1.8
2,571,447 + -0.0
2,571,457 + -0.8
2,571,465 - +0.8
2,571,474 + -1.1
2,571,477 - +1.1
2,571,479 + +1.0
2,571,482 - +2.3
2,571,482 - +1.1
2,571,482 - +0.9
2,571,507 - CCNA_02430 0.12 +2.3
2,571,511 + CCNA_02430 0.13 -1.7
2,571,511 + CCNA_02430 0.13 +1.3
2,571,511 + CCNA_02430 0.13 -2.6
2,571,511 + CCNA_02430 0.13 -0.3
2,571,511 + CCNA_02430 0.13 -0.8
2,571,519 - CCNA_02430 0.14 +2.3
2,571,519 - CCNA_02430 0.14 +1.1
2,571,544 + CCNA_02430 0.20 +1.2
2,571,553 - CCNA_02430 0.21 +1.4
2,571,561 + CCNA_02430 0.23 -1.0
2,571,582 + CCNA_02430 0.28 -2.2
2,571,590 - CCNA_02430 0.29 +0.6
2,571,590 - CCNA_02430 0.29 +1.7
2,571,602 - CCNA_02430 0.32 +2.1
2,571,610 + CCNA_02430 0.33 +1.8
2,571,627 + CCNA_02430 0.37 +2.0
2,571,710 - CCNA_02430 0.54 +1.5
2,571,723 + CCNA_02430 0.57 +0.7
2,571,771 - CCNA_02430 0.67 +2.1
2,571,799 - CCNA_02430 0.73 +1.4
2,571,805 + CCNA_02430 0.74 -0.8
2,571,805 + CCNA_02430 0.74 +1.4
2,571,813 - CCNA_02430 0.76 +1.5
2,571,813 - CCNA_02430 0.76 +1.8
2,571,813 - CCNA_02430 0.76 +0.5
2,571,842 + CCNA_02430 0.82 +0.4
2,571,898 + +0.9
2,571,982 + -2.9
2,571,982 + -1.6
2,571,990 - -3.3
2,571,990 - -0.9
2,572,002 + -1.8
2,572,009 + -3.7
2,572,009 + -2.5
2,572,010 - -2.5
2,572,011 - -3.0
2,572,011 - -1.6
2,572,011 - -1.5
2,572,022 - -2.6
2,572,092 + CCNA_02431 0.11 -2.0
2,572,100 - CCNA_02431 0.12 -2.9
2,572,111 + CCNA_02431 0.12 -1.2
2,572,119 - CCNA_02431 0.13 -0.3
2,572,119 - CCNA_02431 0.13 -4.0
2,572,157 - CCNA_02431 0.16 -1.3
2,572,184 - CCNA_02431 0.18 -1.0
2,572,202 - CCNA_02431 0.20 -1.2
2,572,236 + CCNA_02431 0.22 -2.2
2,572,287 + CCNA_02431 0.26 -0.1
2,572,292 + CCNA_02431 0.26 +0.5
2,572,295 - CCNA_02431 0.27 -2.3
2,572,300 - CCNA_02431 0.27 -2.4
2,572,300 - CCNA_02431 0.27 -3.4
2,572,322 + CCNA_02431 0.29 -1.5
2,572,363 + CCNA_02431 0.32 -0.3
2,572,364 - CCNA_02431 0.32 -3.9
2,572,375 + CCNA_02431 0.33 -1.3
2,572,375 + CCNA_02431 0.33 -0.6
2,572,375 + CCNA_02431 0.33 +0.2
2,572,375 + CCNA_02431 0.33 -2.0
2,572,375 + CCNA_02431 0.33 -1.7
2,572,375 + CCNA_02431 0.33 -1.7
2,572,375 + CCNA_02431 0.33 -1.7
2,572,383 - CCNA_02431 0.34 -2.6
2,572,383 - CCNA_02431 0.34 -2.9
2,572,383 - CCNA_02431 0.34 -2.7
2,572,383 - CCNA_02431 0.34 -0.7
2,572,383 - CCNA_02431 0.34 -1.7
2,572,390 + CCNA_02431 0.34 -0.8
2,572,398 - CCNA_02431 0.35 -2.7
2,572,398 - CCNA_02431 0.35 -1.6
2,572,398 - CCNA_02431 0.35 -2.7
2,572,398 - CCNA_02431 0.35 -1.7
2,572,398 - CCNA_02431 0.35 -1.4
2,572,434 + CCNA_02431 0.38 -3.0
2,572,479 - CCNA_02431 0.41 -1.3
2,572,489 - CCNA_02431 0.42 -1.5
2,572,540 - CCNA_02431 0.46 -1.0
2,572,578 - CCNA_02431 0.49 -2.5
2,572,605 - CCNA_02431 0.51 -1.9
2,572,651 + CCNA_02431 0.54 -0.7
2,572,651 + CCNA_02431 0.54 -3.1
2,572,659 - CCNA_02431 0.55 -2.6
2,572,664 - CCNA_02431 0.55 -3.5
2,572,679 - CCNA_02431 0.57 -2.5
2,572,752 - CCNA_02431 0.62 -1.9
2,572,775 + CCNA_02431 0.64 -2.4
2,572,789 + CCNA_02431 0.65 -3.8
2,572,797 - CCNA_02431 0.66 -0.6
2,572,809 + CCNA_02431 0.67 -0.3
2,572,812 - CCNA_02431 0.67 -0.4
2,572,812 - CCNA_02431 0.67 -3.0
2,572,819 + CCNA_02431 0.67 -0.5
2,572,832 - CCNA_02431 0.68 -1.6
2,572,858 - CCNA_02431 0.70 -4.0
2,572,872 - CCNA_02431 0.72 -2.6
2,572,874 - CCNA_02431 0.72 -1.3
2,572,912 + CCNA_02431 0.75 -1.8
2,572,920 - CCNA_02431 0.75 -2.8
2,572,920 - CCNA_02431 0.75 -3.8
2,572,920 - CCNA_02431 0.75 -0.2

Or see this region's nucleotide sequence