Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02427 and CCNA_02428 are separated by 7 nucleotides CCNA_02428 and CCNA_02429 are separated by 96 nucleotides CCNA_02429 and CCNA_02430 are separated by 2 nucleotides CCNA_02430 and CCNA_02431 are separated by 21 nucleotides
CCNA_02427: CCNA_02427 - septum formation protein Maf, at 2,570,061 to 2,570,666
_02427
CCNA_02428: CCNA_02428 - translation initiation factor 1 (IF-1), at 2,570,674 to 2,570,892
_02428
CCNA_02429: CCNA_02429 - arsenate reductase, at 2,570,989 to 2,571,447
_02429
CCNA_02430: CCNA_02430 - conserved hypothetical cytosolic protein, at 2,571,450 to 2,571,929
_02430
CCNA_02431: CCNA_02431 - histidinol dehydrogenase, at 2,571,951 to 2,573,237
_02431
Position (kb)
2571
2572 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2570.469 kb on - strand, within CCNA_02427 at 2570.475 kb on - strand, within CCNA_02427 at 2570.548 kb on + strand, within CCNA_02427 at 2570.562 kb on - strand, within CCNA_02427 at 2570.583 kb on + strand, within CCNA_02427 at 2570.627 kb on - strand at 2570.950 kb on - strand at 2570.978 kb on + strand at 2570.986 kb on - strand at 2570.994 kb on - strand at 2571.036 kb on + strand, within CCNA_02429 at 2571.036 kb on + strand, within CCNA_02429 at 2571.054 kb on - strand, within CCNA_02429 at 2571.161 kb on + strand, within CCNA_02429 at 2571.161 kb on + strand, within CCNA_02429 at 2571.186 kb on + strand, within CCNA_02429 at 2571.211 kb on + strand, within CCNA_02429 at 2571.212 kb on + strand, within CCNA_02429 at 2571.212 kb on + strand, within CCNA_02429 at 2571.220 kb on - strand, within CCNA_02429 at 2571.220 kb on - strand, within CCNA_02429 at 2571.220 kb on - strand, within CCNA_02429 at 2571.220 kb on - strand, within CCNA_02429 at 2571.231 kb on + strand, within CCNA_02429 at 2571.239 kb on - strand, within CCNA_02429 at 2571.239 kb on - strand, within CCNA_02429 at 2571.243 kb on + strand, within CCNA_02429 at 2571.251 kb on - strand, within CCNA_02429 at 2571.258 kb on + strand, within CCNA_02429 at 2571.260 kb on - strand, within CCNA_02429 at 2571.266 kb on - strand, within CCNA_02429 at 2571.291 kb on + strand, within CCNA_02429 at 2571.304 kb on - strand, within CCNA_02429 at 2571.312 kb on + strand, within CCNA_02429 at 2571.312 kb on + strand, within CCNA_02429 at 2571.320 kb on - strand, within CCNA_02429 at 2571.325 kb on - strand, within CCNA_02429 at 2571.325 kb on - strand, within CCNA_02429 at 2571.333 kb on + strand, within CCNA_02429 at 2571.338 kb on + strand, within CCNA_02429 at 2571.346 kb on - strand, within CCNA_02429 at 2571.346 kb on - strand, within CCNA_02429 at 2571.362 kb on + strand, within CCNA_02429 at 2571.362 kb on + strand, within CCNA_02429 at 2571.413 kb on + strand at 2571.447 kb on + strand at 2571.457 kb on + strand at 2571.465 kb on - strand at 2571.474 kb on + strand at 2571.477 kb on - strand at 2571.479 kb on + strand at 2571.482 kb on - strand at 2571.482 kb on - strand at 2571.482 kb on - strand at 2571.507 kb on - strand, within CCNA_02430 at 2571.511 kb on + strand, within CCNA_02430 at 2571.511 kb on + strand, within CCNA_02430 at 2571.511 kb on + strand, within CCNA_02430 at 2571.511 kb on + strand, within CCNA_02430 at 2571.511 kb on + strand, within CCNA_02430 at 2571.519 kb on - strand, within CCNA_02430 at 2571.519 kb on - strand, within CCNA_02430 at 2571.544 kb on + strand, within CCNA_02430 at 2571.553 kb on - strand, within CCNA_02430 at 2571.561 kb on + strand, within CCNA_02430 at 2571.582 kb on + strand, within CCNA_02430 at 2571.590 kb on - strand, within CCNA_02430 at 2571.590 kb on - strand, within CCNA_02430 at 2571.602 kb on - strand, within CCNA_02430 at 2571.610 kb on + strand, within CCNA_02430 at 2571.627 kb on + strand, within CCNA_02430 at 2571.710 kb on - strand, within CCNA_02430 at 2571.723 kb on + strand, within CCNA_02430 at 2571.771 kb on - strand, within CCNA_02430 at 2571.799 kb on - strand, within CCNA_02430 at 2571.805 kb on + strand, within CCNA_02430 at 2571.805 kb on + strand, within CCNA_02430 at 2571.813 kb on - strand, within CCNA_02430 at 2571.813 kb on - strand, within CCNA_02430 at 2571.813 kb on - strand, within CCNA_02430 at 2571.842 kb on + strand, within CCNA_02430 at 2571.898 kb on + strand at 2571.982 kb on + strand at 2571.982 kb on + strand at 2571.990 kb on - strand at 2571.990 kb on - strand at 2572.002 kb on + strand at 2572.009 kb on + strand at 2572.009 kb on + strand at 2572.010 kb on - strand at 2572.011 kb on - strand at 2572.011 kb on - strand at 2572.011 kb on - strand at 2572.022 kb on - strand at 2572.092 kb on + strand, within CCNA_02431 at 2572.100 kb on - strand, within CCNA_02431 at 2572.111 kb on + strand, within CCNA_02431 at 2572.119 kb on - strand, within CCNA_02431 at 2572.119 kb on - strand, within CCNA_02431 at 2572.157 kb on - strand, within CCNA_02431 at 2572.184 kb on - strand, within CCNA_02431 at 2572.202 kb on - strand, within CCNA_02431 at 2572.236 kb on + strand, within CCNA_02431 at 2572.287 kb on + strand, within CCNA_02431 at 2572.292 kb on + strand, within CCNA_02431 at 2572.295 kb on - strand, within CCNA_02431 at 2572.300 kb on - strand, within CCNA_02431 at 2572.300 kb on - strand, within CCNA_02431 at 2572.322 kb on + strand, within CCNA_02431 at 2572.363 kb on + strand, within CCNA_02431 at 2572.364 kb on - strand, within CCNA_02431 at 2572.375 kb on + strand, within CCNA_02431 at 2572.375 kb on + strand, within CCNA_02431 at 2572.375 kb on + strand, within CCNA_02431 at 2572.375 kb on + strand, within CCNA_02431 at 2572.375 kb on + strand, within CCNA_02431 at 2572.375 kb on + strand, within CCNA_02431 at 2572.375 kb on + strand, within CCNA_02431 at 2572.383 kb on - strand, within CCNA_02431 at 2572.383 kb on - strand, within CCNA_02431 at 2572.383 kb on - strand, within CCNA_02431 at 2572.383 kb on - strand, within CCNA_02431 at 2572.383 kb on - strand, within CCNA_02431 at 2572.390 kb on + strand, within CCNA_02431 at 2572.398 kb on - strand, within CCNA_02431 at 2572.398 kb on - strand, within CCNA_02431 at 2572.398 kb on - strand, within CCNA_02431 at 2572.398 kb on - strand, within CCNA_02431 at 2572.398 kb on - strand, within CCNA_02431 at 2572.434 kb on + strand, within CCNA_02431 at 2572.479 kb on - strand, within CCNA_02431 at 2572.489 kb on - strand, within CCNA_02431 at 2572.540 kb on - strand, within CCNA_02431 at 2572.578 kb on - strand, within CCNA_02431 at 2572.605 kb on - strand, within CCNA_02431 at 2572.651 kb on + strand, within CCNA_02431 at 2572.651 kb on + strand, within CCNA_02431 at 2572.659 kb on - strand, within CCNA_02431 at 2572.664 kb on - strand, within CCNA_02431 at 2572.679 kb on - strand, within CCNA_02431 at 2572.752 kb on - strand, within CCNA_02431 at 2572.775 kb on + strand, within CCNA_02431 at 2572.789 kb on + strand, within CCNA_02431 at 2572.797 kb on - strand, within CCNA_02431 at 2572.809 kb on + strand, within CCNA_02431 at 2572.812 kb on - strand, within CCNA_02431 at 2572.812 kb on - strand, within CCNA_02431 at 2572.819 kb on + strand, within CCNA_02431 at 2572.832 kb on - strand, within CCNA_02431 at 2572.858 kb on - strand, within CCNA_02431 at 2572.872 kb on - strand, within CCNA_02431 at 2572.874 kb on - strand, within CCNA_02431 at 2572.912 kb on + strand, within CCNA_02431 at 2572.920 kb on - strand, within CCNA_02431 at 2572.920 kb on - strand, within CCNA_02431 at 2572.920 kb on - strand, within CCNA_02431
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 2,570,469 - CCNA_02427 0.67 +1.4 2,570,475 - CCNA_02427 0.68 +0.2 2,570,548 + CCNA_02427 0.80 -1.2 2,570,562 - CCNA_02427 0.83 +0.7 2,570,583 + CCNA_02427 0.86 +0.1 2,570,627 - +0.6 2,570,950 - +1.6 2,570,978 + +0.2 2,570,986 - -0.0 2,570,994 - -0.0 2,571,036 + CCNA_02429 0.10 +0.2 2,571,036 + CCNA_02429 0.10 +1.7 2,571,054 - CCNA_02429 0.14 +2.0 2,571,161 + CCNA_02429 0.37 -0.7 2,571,161 + CCNA_02429 0.37 -0.1 2,571,186 + CCNA_02429 0.43 +1.3 2,571,211 + CCNA_02429 0.48 +2.0 2,571,212 + CCNA_02429 0.49 -0.3 2,571,212 + CCNA_02429 0.49 -1.3 2,571,220 - CCNA_02429 0.50 +1.5 2,571,220 - CCNA_02429 0.50 -0.8 2,571,220 - CCNA_02429 0.50 +0.2 2,571,220 - CCNA_02429 0.50 +1.4 2,571,231 + CCNA_02429 0.53 +0.9 2,571,239 - CCNA_02429 0.54 +1.0 2,571,239 - CCNA_02429 0.54 -0.5 2,571,243 + CCNA_02429 0.55 -1.2 2,571,251 - CCNA_02429 0.57 +0.4 2,571,258 + CCNA_02429 0.59 +0.9 2,571,260 - CCNA_02429 0.59 +1.5 2,571,266 - CCNA_02429 0.60 +1.0 2,571,291 + CCNA_02429 0.66 -0.4 2,571,304 - CCNA_02429 0.69 +1.4 2,571,312 + CCNA_02429 0.70 +0.8 2,571,312 + CCNA_02429 0.70 -3.4 2,571,320 - CCNA_02429 0.72 +1.9 2,571,325 - CCNA_02429 0.73 +2.1 2,571,325 - CCNA_02429 0.73 +0.0 2,571,333 + CCNA_02429 0.75 -1.5 2,571,338 + CCNA_02429 0.76 -0.6 2,571,346 - CCNA_02429 0.78 +0.1 2,571,346 - CCNA_02429 0.78 +1.4 2,571,362 + CCNA_02429 0.81 +1.0 2,571,362 + CCNA_02429 0.81 -2.7 2,571,413 + -1.8 2,571,447 + -0.0 2,571,457 + -0.8 2,571,465 - +0.8 2,571,474 + -1.1 2,571,477 - +1.1 2,571,479 + +1.0 2,571,482 - +2.3 2,571,482 - +1.1 2,571,482 - +0.9 2,571,507 - CCNA_02430 0.12 +2.3 2,571,511 + CCNA_02430 0.13 -1.7 2,571,511 + CCNA_02430 0.13 +1.3 2,571,511 + CCNA_02430 0.13 -2.6 2,571,511 + CCNA_02430 0.13 -0.3 2,571,511 + CCNA_02430 0.13 -0.8 2,571,519 - CCNA_02430 0.14 +2.3 2,571,519 - CCNA_02430 0.14 +1.1 2,571,544 + CCNA_02430 0.20 +1.2 2,571,553 - CCNA_02430 0.21 +1.4 2,571,561 + CCNA_02430 0.23 -1.0 2,571,582 + CCNA_02430 0.28 -2.2 2,571,590 - CCNA_02430 0.29 +0.6 2,571,590 - CCNA_02430 0.29 +1.7 2,571,602 - CCNA_02430 0.32 +2.1 2,571,610 + CCNA_02430 0.33 +1.8 2,571,627 + CCNA_02430 0.37 +2.0 2,571,710 - CCNA_02430 0.54 +1.5 2,571,723 + CCNA_02430 0.57 +0.7 2,571,771 - CCNA_02430 0.67 +2.1 2,571,799 - CCNA_02430 0.73 +1.4 2,571,805 + CCNA_02430 0.74 -0.8 2,571,805 + CCNA_02430 0.74 +1.4 2,571,813 - CCNA_02430 0.76 +1.5 2,571,813 - CCNA_02430 0.76 +1.8 2,571,813 - CCNA_02430 0.76 +0.5 2,571,842 + CCNA_02430 0.82 +0.4 2,571,898 + +0.9 2,571,982 + -2.9 2,571,982 + -1.6 2,571,990 - -3.3 2,571,990 - -0.9 2,572,002 + -1.8 2,572,009 + -3.7 2,572,009 + -2.5 2,572,010 - -2.5 2,572,011 - -3.0 2,572,011 - -1.6 2,572,011 - -1.5 2,572,022 - -2.6 2,572,092 + CCNA_02431 0.11 -2.0 2,572,100 - CCNA_02431 0.12 -2.9 2,572,111 + CCNA_02431 0.12 -1.2 2,572,119 - CCNA_02431 0.13 -0.3 2,572,119 - CCNA_02431 0.13 -4.0 2,572,157 - CCNA_02431 0.16 -1.3 2,572,184 - CCNA_02431 0.18 -1.0 2,572,202 - CCNA_02431 0.20 -1.2 2,572,236 + CCNA_02431 0.22 -2.2 2,572,287 + CCNA_02431 0.26 -0.1 2,572,292 + CCNA_02431 0.26 +0.5 2,572,295 - CCNA_02431 0.27 -2.3 2,572,300 - CCNA_02431 0.27 -2.4 2,572,300 - CCNA_02431 0.27 -3.4 2,572,322 + CCNA_02431 0.29 -1.5 2,572,363 + CCNA_02431 0.32 -0.3 2,572,364 - CCNA_02431 0.32 -3.9 2,572,375 + CCNA_02431 0.33 -1.3 2,572,375 + CCNA_02431 0.33 -0.6 2,572,375 + CCNA_02431 0.33 +0.2 2,572,375 + CCNA_02431 0.33 -2.0 2,572,375 + CCNA_02431 0.33 -1.7 2,572,375 + CCNA_02431 0.33 -1.7 2,572,375 + CCNA_02431 0.33 -1.7 2,572,383 - CCNA_02431 0.34 -2.6 2,572,383 - CCNA_02431 0.34 -2.9 2,572,383 - CCNA_02431 0.34 -2.7 2,572,383 - CCNA_02431 0.34 -0.7 2,572,383 - CCNA_02431 0.34 -1.7 2,572,390 + CCNA_02431 0.34 -0.8 2,572,398 - CCNA_02431 0.35 -2.7 2,572,398 - CCNA_02431 0.35 -1.6 2,572,398 - CCNA_02431 0.35 -2.7 2,572,398 - CCNA_02431 0.35 -1.7 2,572,398 - CCNA_02431 0.35 -1.4 2,572,434 + CCNA_02431 0.38 -3.0 2,572,479 - CCNA_02431 0.41 -1.3 2,572,489 - CCNA_02431 0.42 -1.5 2,572,540 - CCNA_02431 0.46 -1.0 2,572,578 - CCNA_02431 0.49 -2.5 2,572,605 - CCNA_02431 0.51 -1.9 2,572,651 + CCNA_02431 0.54 -0.7 2,572,651 + CCNA_02431 0.54 -3.1 2,572,659 - CCNA_02431 0.55 -2.6 2,572,664 - CCNA_02431 0.55 -3.5 2,572,679 - CCNA_02431 0.57 -2.5 2,572,752 - CCNA_02431 0.62 -1.9 2,572,775 + CCNA_02431 0.64 -2.4 2,572,789 + CCNA_02431 0.65 -3.8 2,572,797 - CCNA_02431 0.66 -0.6 2,572,809 + CCNA_02431 0.67 -0.3 2,572,812 - CCNA_02431 0.67 -0.4 2,572,812 - CCNA_02431 0.67 -3.0 2,572,819 + CCNA_02431 0.67 -0.5 2,572,832 - CCNA_02431 0.68 -1.6 2,572,858 - CCNA_02431 0.70 -4.0 2,572,872 - CCNA_02431 0.72 -2.6 2,572,874 - CCNA_02431 0.72 -1.3 2,572,912 + CCNA_02431 0.75 -1.8 2,572,920 - CCNA_02431 0.75 -2.8 2,572,920 - CCNA_02431 0.75 -3.8 2,572,920 - CCNA_02431 0.75 -0.2
Or see this region's nucleotide sequence