Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01490 and CCNA_01491 are separated by 9 nucleotides CCNA_01491 and CCNA_01492 are separated by 24 nucleotides CCNA_01492 and CCNA_01493 are separated by 73 nucleotides
CCNA_01490: CCNA_01490 - FAD-dependent dehydrogenase, at 1,598,349 to 1,599,989
_01490
CCNA_01491: CCNA_01491 - cystathionine beta-lyase, at 1,599,999 to 1,601,159
_01491
CCNA_01492: CCNA_01492 - 3-mercaptopyruvate sulfurtransferase, at 1,601,184 to 1,602,041
_01492
CCNA_01493: CCNA_01493 - cysteine synthase, at 1,602,115 to 1,603,113
_01493
Position (kb)
1599
1600
1601
1602 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1599.007 kb on + strand, within CCNA_01490 at 1599.051 kb on + strand, within CCNA_01490 at 1599.096 kb on + strand, within CCNA_01490 at 1599.101 kb on + strand, within CCNA_01490 at 1599.101 kb on + strand, within CCNA_01490 at 1599.109 kb on - strand, within CCNA_01490 at 1599.141 kb on + strand, within CCNA_01490 at 1599.152 kb on + strand, within CCNA_01490 at 1599.155 kb on - strand, within CCNA_01490 at 1599.175 kb on + strand, within CCNA_01490 at 1599.207 kb on - strand, within CCNA_01490 at 1599.211 kb on - strand, within CCNA_01490 at 1599.221 kb on + strand, within CCNA_01490 at 1599.333 kb on + strand, within CCNA_01490 at 1599.351 kb on + strand, within CCNA_01490 at 1599.351 kb on + strand, within CCNA_01490 at 1599.351 kb on + strand, within CCNA_01490 at 1599.351 kb on + strand, within CCNA_01490 at 1599.351 kb on + strand, within CCNA_01490 at 1599.351 kb on + strand, within CCNA_01490 at 1599.351 kb on + strand, within CCNA_01490 at 1599.359 kb on - strand, within CCNA_01490 at 1599.392 kb on - strand, within CCNA_01490 at 1599.441 kb on - strand, within CCNA_01490 at 1599.460 kb on - strand, within CCNA_01490 at 1599.462 kb on + strand, within CCNA_01490 at 1599.533 kb on - strand, within CCNA_01490 at 1599.588 kb on - strand, within CCNA_01490 at 1599.593 kb on - strand, within CCNA_01490 at 1599.651 kb on - strand, within CCNA_01490 at 1599.669 kb on - strand, within CCNA_01490 at 1599.755 kb on - strand, within CCNA_01490 at 1599.760 kb on + strand, within CCNA_01490 at 1599.845 kb on - strand at 1599.847 kb on + strand at 1599.848 kb on + strand at 1599.854 kb on - strand at 1599.882 kb on + strand at 1599.933 kb on - strand at 1599.969 kb on + strand at 1599.969 kb on + strand at 1599.974 kb on + strand at 1599.997 kb on + strand at 1599.997 kb on + strand at 1599.997 kb on + strand at 1599.997 kb on + strand at 1600.005 kb on - strand at 1600.005 kb on - strand at 1600.005 kb on - strand at 1600.012 kb on + strand at 1600.014 kb on + strand at 1600.021 kb on + strand at 1600.022 kb on - strand at 1600.022 kb on - strand at 1600.053 kb on - strand at 1600.053 kb on - strand at 1600.053 kb on - strand at 1600.053 kb on - strand at 1600.060 kb on + strand at 1600.090 kb on + strand at 1600.106 kb on - strand at 1600.138 kb on - strand, within CCNA_01491 at 1600.143 kb on + strand, within CCNA_01491 at 1600.148 kb on + strand, within CCNA_01491 at 1600.151 kb on - strand, within CCNA_01491 at 1600.156 kb on - strand, within CCNA_01491 at 1600.187 kb on - strand, within CCNA_01491 at 1600.187 kb on - strand, within CCNA_01491 at 1600.237 kb on + strand, within CCNA_01491 at 1600.257 kb on - strand, within CCNA_01491 at 1600.257 kb on - strand, within CCNA_01491 at 1600.331 kb on - strand, within CCNA_01491 at 1600.360 kb on - strand, within CCNA_01491 at 1600.360 kb on - strand, within CCNA_01491 at 1600.360 kb on - strand, within CCNA_01491 at 1600.385 kb on - strand, within CCNA_01491 at 1600.395 kb on + strand, within CCNA_01491 at 1600.423 kb on - strand, within CCNA_01491 at 1600.434 kb on + strand, within CCNA_01491 at 1600.435 kb on + strand, within CCNA_01491 at 1600.435 kb on + strand, within CCNA_01491 at 1600.438 kb on - strand, within CCNA_01491 at 1600.443 kb on - strand, within CCNA_01491 at 1600.443 kb on - strand, within CCNA_01491 at 1600.443 kb on - strand, within CCNA_01491 at 1600.486 kb on + strand, within CCNA_01491 at 1600.494 kb on - strand, within CCNA_01491 at 1600.500 kb on - strand, within CCNA_01491 at 1600.515 kb on + strand, within CCNA_01491 at 1600.523 kb on - strand, within CCNA_01491 at 1600.576 kb on - strand, within CCNA_01491 at 1600.603 kb on + strand, within CCNA_01491 at 1600.742 kb on + strand, within CCNA_01491 at 1600.764 kb on - strand, within CCNA_01491 at 1600.782 kb on - strand, within CCNA_01491 at 1600.787 kb on + strand, within CCNA_01491 at 1600.787 kb on + strand, within CCNA_01491 at 1600.787 kb on + strand, within CCNA_01491 at 1600.795 kb on - strand, within CCNA_01491 at 1600.795 kb on - strand, within CCNA_01491 at 1600.815 kb on - strand, within CCNA_01491 at 1600.863 kb on + strand, within CCNA_01491 at 1600.877 kb on - strand, within CCNA_01491 at 1600.932 kb on - strand, within CCNA_01491 at 1600.944 kb on - strand, within CCNA_01491 at 1600.951 kb on - strand, within CCNA_01491 at 1600.966 kb on + strand, within CCNA_01491 at 1600.970 kb on - strand, within CCNA_01491 at 1601.004 kb on - strand, within CCNA_01491 at 1601.027 kb on + strand, within CCNA_01491 at 1601.043 kb on - strand, within CCNA_01491 at 1601.045 kb on - strand at 1601.068 kb on - strand at 1601.079 kb on - strand at 1601.114 kb on - strand at 1601.121 kb on + strand at 1601.164 kb on + strand at 1601.253 kb on - strand at 1601.255 kb on + strand at 1601.263 kb on - strand at 1601.265 kb on + strand at 1601.325 kb on + strand, within CCNA_01492 at 1601.325 kb on + strand, within CCNA_01492 at 1601.333 kb on + strand, within CCNA_01492 at 1601.333 kb on - strand, within CCNA_01492 at 1601.396 kb on + strand, within CCNA_01492 at 1601.404 kb on - strand, within CCNA_01492 at 1601.409 kb on - strand, within CCNA_01492 at 1601.480 kb on + strand, within CCNA_01492 at 1601.480 kb on + strand, within CCNA_01492 at 1601.480 kb on + strand, within CCNA_01492 at 1601.480 kb on + strand, within CCNA_01492 at 1601.488 kb on - strand, within CCNA_01492 at 1601.488 kb on - strand, within CCNA_01492 at 1601.488 kb on - strand, within CCNA_01492 at 1601.488 kb on - strand, within CCNA_01492 at 1601.488 kb on - strand, within CCNA_01492 at 1601.493 kb on - strand, within CCNA_01492 at 1601.625 kb on + strand, within CCNA_01492 at 1601.687 kb on - strand, within CCNA_01492 at 1601.757 kb on + strand, within CCNA_01492 at 1601.763 kb on - strand, within CCNA_01492 at 1601.765 kb on - strand, within CCNA_01492 at 1601.765 kb on - strand, within CCNA_01492 at 1601.765 kb on - strand, within CCNA_01492 at 1601.765 kb on - strand, within CCNA_01492 at 1601.789 kb on + strand, within CCNA_01492 at 1601.797 kb on - strand, within CCNA_01492 at 1601.797 kb on - strand, within CCNA_01492 at 1601.832 kb on + strand, within CCNA_01492 at 1601.847 kb on + strand, within CCNA_01492 at 1601.901 kb on - strand, within CCNA_01492 at 1601.958 kb on + strand at 1601.992 kb on - strand at 1602.004 kb on - strand at 1602.005 kb on + strand at 1602.071 kb on + strand at 1602.071 kb on + strand at 1602.079 kb on - strand at 1602.079 kb on - strand at 1602.079 kb on - strand at 1602.079 kb on - strand at 1602.079 kb on - strand at 1602.127 kb on - strand at 1602.127 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 1,599,007 + CCNA_01490 0.40 +1.8 1,599,051 + CCNA_01490 0.43 -0.7 1,599,096 + CCNA_01490 0.46 +1.0 1,599,101 + CCNA_01490 0.46 +1.4 1,599,101 + CCNA_01490 0.46 -1.2 1,599,109 - CCNA_01490 0.46 +2.2 1,599,141 + CCNA_01490 0.48 +0.2 1,599,152 + CCNA_01490 0.49 +0.4 1,599,155 - CCNA_01490 0.49 +1.6 1,599,175 + CCNA_01490 0.50 +1.2 1,599,207 - CCNA_01490 0.52 +0.7 1,599,211 - CCNA_01490 0.53 +1.0 1,599,221 + CCNA_01490 0.53 +1.0 1,599,333 + CCNA_01490 0.60 +3.6 1,599,351 + CCNA_01490 0.61 +0.6 1,599,351 + CCNA_01490 0.61 -0.8 1,599,351 + CCNA_01490 0.61 +1.2 1,599,351 + CCNA_01490 0.61 +0.8 1,599,351 + CCNA_01490 0.61 +0.3 1,599,351 + CCNA_01490 0.61 +0.4 1,599,351 + CCNA_01490 0.61 -0.1 1,599,359 - CCNA_01490 0.62 -1.6 1,599,392 - CCNA_01490 0.64 -1.0 1,599,441 - CCNA_01490 0.67 +0.3 1,599,460 - CCNA_01490 0.68 +1.1 1,599,462 + CCNA_01490 0.68 +0.6 1,599,533 - CCNA_01490 0.72 +1.0 1,599,588 - CCNA_01490 0.76 +0.1 1,599,593 - CCNA_01490 0.76 -2.3 1,599,651 - CCNA_01490 0.79 -1.2 1,599,669 - CCNA_01490 0.80 +0.2 1,599,755 - CCNA_01490 0.86 -2.4 1,599,760 + CCNA_01490 0.86 +0.9 1,599,845 - +0.5 1,599,847 + +2.0 1,599,848 + +1.0 1,599,854 - -0.6 1,599,882 + -0.5 1,599,933 - +0.1 1,599,969 + +0.8 1,599,969 + +0.9 1,599,974 + +0.7 1,599,997 + -0.6 1,599,997 + -1.0 1,599,997 + -2.1 1,599,997 + -2.4 1,600,005 - +1.0 1,600,005 - +0.1 1,600,005 - -1.5 1,600,012 + -1.2 1,600,014 + +0.5 1,600,021 + -3.5 1,600,022 - +2.6 1,600,022 - -2.1 1,600,053 - -0.4 1,600,053 - -2.9 1,600,053 - -1.1 1,600,053 - +1.0 1,600,060 + +1.8 1,600,090 + -2.7 1,600,106 - +0.0 1,600,138 - CCNA_01491 0.12 -1.1 1,600,143 + CCNA_01491 0.12 +2.1 1,600,148 + CCNA_01491 0.13 -0.5 1,600,151 - CCNA_01491 0.13 -2.7 1,600,156 - CCNA_01491 0.14 -0.4 1,600,187 - CCNA_01491 0.16 -0.1 1,600,187 - CCNA_01491 0.16 +0.3 1,600,237 + CCNA_01491 0.20 -1.9 1,600,257 - CCNA_01491 0.22 -0.3 1,600,257 - CCNA_01491 0.22 -1.1 1,600,331 - CCNA_01491 0.29 +1.6 1,600,360 - CCNA_01491 0.31 -1.7 1,600,360 - CCNA_01491 0.31 -0.4 1,600,360 - CCNA_01491 0.31 -0.5 1,600,385 - CCNA_01491 0.33 -1.7 1,600,395 + CCNA_01491 0.34 -1.1 1,600,423 - CCNA_01491 0.37 +0.1 1,600,434 + CCNA_01491 0.37 -1.2 1,600,435 + CCNA_01491 0.38 +0.8 1,600,435 + CCNA_01491 0.38 +0.7 1,600,438 - CCNA_01491 0.38 -0.3 1,600,443 - CCNA_01491 0.38 -0.8 1,600,443 - CCNA_01491 0.38 -0.6 1,600,443 - CCNA_01491 0.38 +0.6 1,600,486 + CCNA_01491 0.42 -1.3 1,600,494 - CCNA_01491 0.43 -1.6 1,600,500 - CCNA_01491 0.43 -1.4 1,600,515 + CCNA_01491 0.44 -2.1 1,600,523 - CCNA_01491 0.45 -0.0 1,600,576 - CCNA_01491 0.50 -1.7 1,600,603 + CCNA_01491 0.52 -1.1 1,600,742 + CCNA_01491 0.64 +0.6 1,600,764 - CCNA_01491 0.66 -1.5 1,600,782 - CCNA_01491 0.67 -1.9 1,600,787 + CCNA_01491 0.68 -1.3 1,600,787 + CCNA_01491 0.68 +1.1 1,600,787 + CCNA_01491 0.68 +1.3 1,600,795 - CCNA_01491 0.69 -1.1 1,600,795 - CCNA_01491 0.69 +0.0 1,600,815 - CCNA_01491 0.70 -0.6 1,600,863 + CCNA_01491 0.74 -1.6 1,600,877 - CCNA_01491 0.76 -1.6 1,600,932 - CCNA_01491 0.80 -1.7 1,600,944 - CCNA_01491 0.81 +0.5 1,600,951 - CCNA_01491 0.82 -1.9 1,600,966 + CCNA_01491 0.83 -1.4 1,600,970 - CCNA_01491 0.84 -0.1 1,601,004 - CCNA_01491 0.87 -2.0 1,601,027 + CCNA_01491 0.89 -0.7 1,601,043 - CCNA_01491 0.90 +0.9 1,601,045 - -2.0 1,601,068 - -0.5 1,601,079 - -2.3 1,601,114 - -1.4 1,601,121 + -0.0 1,601,164 + +1.6 1,601,253 - -0.0 1,601,255 + +3.3 1,601,263 - -1.1 1,601,265 + -0.4 1,601,325 + CCNA_01492 0.16 -2.2 1,601,325 + CCNA_01492 0.16 -1.5 1,601,333 + CCNA_01492 0.17 -0.3 1,601,333 - CCNA_01492 0.17 +1.1 1,601,396 + CCNA_01492 0.25 -0.8 1,601,404 - CCNA_01492 0.26 +0.9 1,601,409 - CCNA_01492 0.26 +3.4 1,601,480 + CCNA_01492 0.34 +0.6 1,601,480 + CCNA_01492 0.34 +0.3 1,601,480 + CCNA_01492 0.34 +0.4 1,601,480 + CCNA_01492 0.34 -1.9 1,601,488 - CCNA_01492 0.35 +0.9 1,601,488 - CCNA_01492 0.35 +1.1 1,601,488 - CCNA_01492 0.35 +1.8 1,601,488 - CCNA_01492 0.35 +0.6 1,601,488 - CCNA_01492 0.35 +0.1 1,601,493 - CCNA_01492 0.36 -1.8 1,601,625 + CCNA_01492 0.51 +0.0 1,601,687 - CCNA_01492 0.59 +2.0 1,601,757 + CCNA_01492 0.67 -0.7 1,601,763 - CCNA_01492 0.67 +0.9 1,601,765 - CCNA_01492 0.68 +0.9 1,601,765 - CCNA_01492 0.68 +1.2 1,601,765 - CCNA_01492 0.68 +0.6 1,601,765 - CCNA_01492 0.68 -1.3 1,601,789 + CCNA_01492 0.71 +0.4 1,601,797 - CCNA_01492 0.71 +1.1 1,601,797 - CCNA_01492 0.71 +1.1 1,601,832 + CCNA_01492 0.76 -2.0 1,601,847 + CCNA_01492 0.77 -1.9 1,601,901 - CCNA_01492 0.84 -1.2 1,601,958 + -1.4 1,601,992 - +0.9 1,602,004 - +0.4 1,602,005 + +0.2 1,602,071 + -2.9 1,602,071 + +0.3 1,602,079 - +0.3 1,602,079 - +1.2 1,602,079 - -0.8 1,602,079 - +0.6 1,602,079 - -1.8 1,602,127 - +0.1 1,602,127 - +0.8
Or see this region's nucleotide sequence