Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00680

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00679 and CCNA_00680 are separated by 132 nucleotidesCCNA_00680 and CCNA_00681 overlap by 4 nucleotidesCCNA_00681 and CCNA_00682 are separated by 94 nucleotides CCNA_00679: CCNA_00679 - transposase, IS116/IS110/IS902 family, at 735,544 to 736,479 _00679 CCNA_00680: CCNA_00680 - 2-hydroxychromene-2-carboxylate isomerase, at 736,612 to 737,247 _00680 CCNA_00681: CCNA_00681 - short chain dehydrogenase, at 737,244 to 737,981 _00681 CCNA_00682: CCNA_00682 - MarR-family transcriptional regulator, at 738,076 to 738,534 _00682 Position (kb) 736 737 738Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 736.489 kb on + strandat 736.499 kb on + strandat 736.499 kb on + strandat 736.499 kb on + strandat 736.499 kb on + strandat 736.525 kb on + strandat 736.533 kb on - strandat 736.564 kb on - strandat 736.573 kb on + strandat 736.582 kb on + strandat 736.596 kb on - strandat 736.609 kb on + strandat 736.631 kb on + strandat 736.639 kb on - strandat 736.653 kb on - strandat 736.674 kb on - strandat 736.729 kb on - strand, within CCNA_00680at 736.745 kb on + strand, within CCNA_00680at 736.752 kb on + strand, within CCNA_00680at 736.753 kb on - strand, within CCNA_00680at 736.753 kb on - strand, within CCNA_00680at 736.753 kb on - strand, within CCNA_00680at 736.753 kb on - strand, within CCNA_00680at 736.753 kb on - strand, within CCNA_00680at 736.753 kb on - strand, within CCNA_00680at 736.760 kb on - strand, within CCNA_00680at 736.777 kb on - strand, within CCNA_00680at 736.797 kb on - strand, within CCNA_00680at 736.832 kb on - strand, within CCNA_00680at 736.862 kb on + strand, within CCNA_00680at 736.862 kb on + strand, within CCNA_00680at 736.862 kb on + strand, within CCNA_00680at 736.862 kb on + strand, within CCNA_00680at 736.870 kb on - strandat 736.870 kb on - strand, within CCNA_00680at 736.883 kb on - strand, within CCNA_00680at 736.885 kb on + strand, within CCNA_00680at 736.893 kb on - strand, within CCNA_00680at 736.893 kb on - strand, within CCNA_00680at 736.935 kb on - strand, within CCNA_00680at 736.940 kb on + strand, within CCNA_00680at 736.940 kb on + strand, within CCNA_00680at 736.947 kb on - strand, within CCNA_00680at 736.966 kb on - strand, within CCNA_00680at 736.981 kb on + strand, within CCNA_00680at 737.006 kb on + strand, within CCNA_00680at 737.008 kb on + strand, within CCNA_00680at 737.065 kb on - strand, within CCNA_00680at 737.078 kb on + strand, within CCNA_00680at 737.078 kb on + strand, within CCNA_00680at 737.126 kb on - strand, within CCNA_00680at 737.133 kb on - strand, within CCNA_00680at 737.171 kb on + strand, within CCNA_00680at 737.232 kb on + strandat 737.250 kb on - strandat 737.258 kb on - strandat 737.260 kb on - strandat 737.270 kb on + strandat 737.270 kb on + strandat 737.270 kb on + strandat 737.270 kb on + strandat 737.270 kb on + strandat 737.270 kb on + strandat 737.278 kb on - strandat 737.297 kb on - strandat 737.317 kb on + strandat 737.341 kb on + strand, within CCNA_00681at 737.348 kb on + strand, within CCNA_00681at 737.360 kb on + strand, within CCNA_00681at 737.397 kb on + strand, within CCNA_00681at 737.397 kb on + strand, within CCNA_00681at 737.397 kb on + strand, within CCNA_00681at 737.405 kb on - strand, within CCNA_00681at 737.405 kb on - strand, within CCNA_00681at 737.405 kb on - strand, within CCNA_00681at 737.405 kb on - strandat 737.405 kb on - strand, within CCNA_00681at 737.457 kb on - strand, within CCNA_00681at 737.495 kb on + strand, within CCNA_00681at 737.570 kb on - strand, within CCNA_00681at 737.575 kb on - strand, within CCNA_00681at 737.577 kb on - strand, within CCNA_00681at 737.606 kb on + strand, within CCNA_00681at 737.643 kb on + strand, within CCNA_00681at 737.644 kb on + strand, within CCNA_00681at 737.655 kb on + strand, within CCNA_00681at 737.659 kb on - strand, within CCNA_00681at 737.684 kb on + strand, within CCNA_00681at 737.684 kb on + strand, within CCNA_00681at 737.684 kb on + strand, within CCNA_00681at 737.684 kb on + strand, within CCNA_00681at 737.689 kb on + strand, within CCNA_00681at 737.692 kb on - strand, within CCNA_00681at 737.715 kb on - strand, within CCNA_00681at 737.717 kb on - strand, within CCNA_00681at 737.730 kb on - strand, within CCNA_00681at 737.811 kb on + strand, within CCNA_00681at 737.811 kb on + strand, within CCNA_00681at 737.819 kb on - strand, within CCNA_00681at 737.819 kb on - strand, within CCNA_00681at 737.819 kb on - strand, within CCNA_00681at 737.819 kb on - strand, within CCNA_00681at 737.819 kb on - strand, within CCNA_00681at 737.819 kb on - strand, within CCNA_00681at 737.819 kb on - strand, within CCNA_00681at 737.819 kb on - strand, within CCNA_00681at 737.819 kb on - strand, within CCNA_00681at 737.854 kb on - strand, within CCNA_00681at 737.888 kb on + strand, within CCNA_00681at 737.888 kb on + strand, within CCNA_00681at 737.890 kb on + strand, within CCNA_00681at 737.890 kb on + strand, within CCNA_00681at 737.890 kb on + strand, within CCNA_00681at 737.890 kb on + strand, within CCNA_00681at 737.890 kb on + strand, within CCNA_00681at 737.890 kb on + strand, within CCNA_00681at 737.890 kb on + strand, within CCNA_00681at 737.890 kb on + strand, within CCNA_00681at 737.890 kb on + strandat 737.895 kb on + strand, within CCNA_00681at 737.896 kb on - strand, within CCNA_00681at 737.896 kb on - strand, within CCNA_00681at 737.896 kb on - strand, within CCNA_00681at 737.896 kb on - strand, within CCNA_00681at 737.898 kb on - strand, within CCNA_00681at 737.898 kb on - strand, within CCNA_00681at 737.898 kb on - strand, within CCNA_00681at 737.898 kb on - strand, within CCNA_00681at 737.898 kb on - strand, within CCNA_00681at 737.898 kb on - strand, within CCNA_00681at 737.898 kb on - strand, within CCNA_00681at 737.898 kb on - strand, within CCNA_00681at 737.898 kb on - strand, within CCNA_00681at 737.898 kb on - strand, within CCNA_00681at 737.903 kb on - strand, within CCNA_00681at 737.910 kb on + strandat 737.910 kb on + strandat 737.918 kb on - strandat 737.918 kb on - strandat 737.919 kb on - strandat 737.919 kb on - strandat 737.959 kb on - strandat 737.959 kb on - strandat 737.959 kb on - strandat 738.073 kb on + strandat 738.091 kb on - strandat 738.093 kb on - strandat 738.102 kb on + strandat 738.110 kb on - strandat 738.110 kb on - strandat 738.196 kb on - strand, within CCNA_00682at 738.196 kb on - strand, within CCNA_00682at 738.196 kb on - strand, within CCNA_00682at 738.236 kb on - strand, within CCNA_00682

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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736,489 + -1.1
736,499 + -0.4
736,499 + +0.1
736,499 + +0.3
736,499 + -2.7
736,525 + -0.5
736,533 - +0.6
736,564 - +0.2
736,573 + +1.0
736,582 + +0.3
736,596 - +0.3
736,609 + +0.4
736,631 + -1.6
736,639 - +1.4
736,653 - -0.6
736,674 - +1.3
736,729 - CCNA_00680 0.18 -0.4
736,745 + CCNA_00680 0.21 -0.3
736,752 + CCNA_00680 0.22 -0.1
736,753 - CCNA_00680 0.22 +0.3
736,753 - CCNA_00680 0.22 +0.4
736,753 - CCNA_00680 0.22 -1.8
736,753 - CCNA_00680 0.22 +0.1
736,753 - CCNA_00680 0.22 +1.3
736,753 - CCNA_00680 0.22 -0.4
736,760 - CCNA_00680 0.23 +1.1
736,777 - CCNA_00680 0.26 +0.8
736,797 - CCNA_00680 0.29 -0.7
736,832 - CCNA_00680 0.35 -0.5
736,862 + CCNA_00680 0.39 -1.5
736,862 + CCNA_00680 0.39 -0.5
736,862 + CCNA_00680 0.39 -2.2
736,862 + CCNA_00680 0.39 -0.2
736,870 - +1.6
736,870 - CCNA_00680 0.41 +0.6
736,883 - CCNA_00680 0.43 +0.3
736,885 + CCNA_00680 0.43 -0.3
736,893 - CCNA_00680 0.44 -0.8
736,893 - CCNA_00680 0.44 +0.6
736,935 - CCNA_00680 0.51 -0.7
736,940 + CCNA_00680 0.52 -0.9
736,940 + CCNA_00680 0.52 +0.7
736,947 - CCNA_00680 0.53 +1.5
736,966 - CCNA_00680 0.56 -0.4
736,981 + CCNA_00680 0.58 +0.6
737,006 + CCNA_00680 0.62 -1.4
737,008 + CCNA_00680 0.62 -0.9
737,065 - CCNA_00680 0.71 -1.3
737,078 + CCNA_00680 0.73 -0.7
737,078 + CCNA_00680 0.73 -0.4
737,126 - CCNA_00680 0.81 +0.3
737,133 - CCNA_00680 0.82 -1.9
737,171 + CCNA_00680 0.88 -1.7
737,232 + -1.5
737,250 - -1.2
737,258 - -2.1
737,260 - -1.0
737,270 + -0.9
737,270 + +0.9
737,270 + +0.6
737,270 + -3.2
737,270 + -0.7
737,270 + +0.8
737,278 - +0.1
737,297 - -0.2
737,317 + -2.0
737,341 + CCNA_00681 0.13 -2.0
737,348 + CCNA_00681 0.14 +1.4
737,360 + CCNA_00681 0.16 -0.7
737,397 + CCNA_00681 0.21 -0.4
737,397 + CCNA_00681 0.21 +0.8
737,397 + CCNA_00681 0.21 -0.9
737,405 - CCNA_00681 0.22 +0.2
737,405 - CCNA_00681 0.22 -0.5
737,405 - CCNA_00681 0.22 -1.5
737,405 - -0.4
737,405 - CCNA_00681 0.22 -0.4
737,457 - CCNA_00681 0.29 -0.1
737,495 + CCNA_00681 0.34 +0.7
737,570 - CCNA_00681 0.44 -2.2
737,575 - CCNA_00681 0.45 +1.3
737,577 - CCNA_00681 0.45 -0.4
737,606 + CCNA_00681 0.49 -0.5
737,643 + CCNA_00681 0.54 -0.7
737,644 + CCNA_00681 0.54 -2.7
737,655 + CCNA_00681 0.56 +1.8
737,659 - CCNA_00681 0.56 -0.4
737,684 + CCNA_00681 0.60 +0.6
737,684 + CCNA_00681 0.60 +1.5
737,684 + CCNA_00681 0.60 -0.8
737,684 + CCNA_00681 0.60 -0.6
737,689 + CCNA_00681 0.60 +0.6
737,692 - CCNA_00681 0.61 -0.1
737,715 - CCNA_00681 0.64 -0.5
737,717 - CCNA_00681 0.64 -0.5
737,730 - CCNA_00681 0.66 -0.5
737,811 + CCNA_00681 0.77 +2.6
737,811 + CCNA_00681 0.77 -1.2
737,819 - CCNA_00681 0.78 +0.8
737,819 - CCNA_00681 0.78 +0.3
737,819 - CCNA_00681 0.78 +2.0
737,819 - CCNA_00681 0.78 -1.2
737,819 - CCNA_00681 0.78 +3.0
737,819 - CCNA_00681 0.78 -0.7
737,819 - CCNA_00681 0.78 -0.7
737,819 - CCNA_00681 0.78 -0.4
737,819 - CCNA_00681 0.78 -2.3
737,854 - CCNA_00681 0.83 +0.2
737,888 + CCNA_00681 0.87 +0.6
737,888 + CCNA_00681 0.87 -1.3
737,890 + CCNA_00681 0.88 +1.8
737,890 + CCNA_00681 0.88 -0.2
737,890 + CCNA_00681 0.88 -0.4
737,890 + CCNA_00681 0.88 -1.0
737,890 + CCNA_00681 0.88 +0.7
737,890 + CCNA_00681 0.88 -1.8
737,890 + CCNA_00681 0.88 -3.0
737,890 + CCNA_00681 0.88 -2.5
737,890 + +1.6
737,895 + CCNA_00681 0.88 -0.7
737,896 - CCNA_00681 0.88 -2.2
737,896 - CCNA_00681 0.88 +1.2
737,896 - CCNA_00681 0.88 -2.6
737,896 - CCNA_00681 0.88 -0.2
737,898 - CCNA_00681 0.89 -2.3
737,898 - CCNA_00681 0.89 -0.7
737,898 - CCNA_00681 0.89 +0.3
737,898 - CCNA_00681 0.89 -0.7
737,898 - CCNA_00681 0.89 -0.2
737,898 - CCNA_00681 0.89 +0.8
737,898 - CCNA_00681 0.89 -0.4
737,898 - CCNA_00681 0.89 -0.4
737,898 - CCNA_00681 0.89 +0.1
737,898 - CCNA_00681 0.89 +0.4
737,903 - CCNA_00681 0.89 -0.1
737,910 + -1.5
737,910 + +0.0
737,918 - -0.0
737,918 - +0.6
737,919 - +1.0
737,919 - -0.2
737,959 - +0.4
737,959 - -1.5
737,959 - -1.3
738,073 + +2.6
738,091 - +1.5
738,093 - +0.5
738,102 + +0.9
738,110 - -1.7
738,110 - +0.3
738,196 - CCNA_00682 0.26 -0.5
738,196 - CCNA_00682 0.26 -1.8
738,196 - CCNA_00682 0.26 +1.6
738,236 - CCNA_00682 0.35 -0.9

Or see this region's nucleotide sequence