Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4765

Experiment: D-Gluconic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4763 and Ac3H11_4764 are separated by 13 nucleotidesAc3H11_4764 and Ac3H11_4765 overlap by 1 nucleotidesAc3H11_4765 and Ac3H11_4766 are separated by 20 nucleotides Ac3H11_4763 - Dephospho-CoA kinase (EC 2.7.1.24), at 63,637 to 64,257 _4763 Ac3H11_4764 - Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-), at 64,271 to 65,143 _4764 Ac3H11_4765 - Type IV fimbrial assembly protein PilC, at 65,143 to 66,363 _4765 Ac3H11_4766 - Type IV fimbrial assembly, ATPase PilB, at 66,384 to 68,054 _4766 Position (kb) 65 66 67Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 64.272 kb on + strandat 64.272 kb on + strandat 64.272 kb on + strandat 64.272 kb on + strandat 64.272 kb on + strandat 64.272 kb on + strandat 64.273 kb on - strandat 64.273 kb on - strandat 64.273 kb on - strandat 64.273 kb on - strandat 64.273 kb on - strandat 64.273 kb on - strandat 65.145 kb on - strandat 65.178 kb on - strandat 65.178 kb on - strandat 65.178 kb on - strandat 65.178 kb on - strandat 65.178 kb on - strandat 65.178 kb on - strandat 65.178 kb on - strandat 65.178 kb on - strandat 65.178 kb on - strandat 65.178 kb on - strandat 65.178 kb on - strandat 65.178 kb on - strandat 65.178 kb on - strandat 65.283 kb on - strand, within Ac3H11_4765at 65.448 kb on - strand, within Ac3H11_4765at 65.448 kb on - strand, within Ac3H11_4765at 65.448 kb on - strand, within Ac3H11_4765at 65.588 kb on - strand, within Ac3H11_4765at 65.588 kb on - strand, within Ac3H11_4765at 65.588 kb on - strand, within Ac3H11_4765at 65.588 kb on - strand, within Ac3H11_4765at 65.588 kb on - strand, within Ac3H11_4765at 65.666 kb on - strand, within Ac3H11_4765at 65.666 kb on - strand, within Ac3H11_4765at 65.666 kb on - strand, within Ac3H11_4765at 65.666 kb on - strand, within Ac3H11_4765at 65.666 kb on - strand, within Ac3H11_4765at 65.668 kb on - strand, within Ac3H11_4765at 65.668 kb on - strand, within Ac3H11_4765at 65.713 kb on - strand, within Ac3H11_4765at 65.844 kb on - strand, within Ac3H11_4765at 65.844 kb on - strand, within Ac3H11_4765at 65.844 kb on - strand, within Ac3H11_4765at 65.895 kb on - strand, within Ac3H11_4765at 65.895 kb on - strand, within Ac3H11_4765at 65.895 kb on - strand, within Ac3H11_4765at 65.895 kb on - strand, within Ac3H11_4765at 65.895 kb on - strand, within Ac3H11_4765at 65.895 kb on - strand, within Ac3H11_4765at 65.895 kb on - strand, within Ac3H11_4765at 65.895 kb on - strand, within Ac3H11_4765at 65.899 kb on - strand, within Ac3H11_4765at 65.899 kb on - strand, within Ac3H11_4765at 65.899 kb on - strand, within Ac3H11_4765at 65.899 kb on - strand, within Ac3H11_4765at 65.959 kb on - strand, within Ac3H11_4765at 65.964 kb on - strand, within Ac3H11_4765at 65.988 kb on - strand, within Ac3H11_4765at 65.988 kb on - strand, within Ac3H11_4765at 65.988 kb on - strand, within Ac3H11_4765at 66.040 kb on - strand, within Ac3H11_4765at 66.040 kb on - strand, within Ac3H11_4765at 66.050 kb on - strand, within Ac3H11_4765at 66.050 kb on - strand, within Ac3H11_4765at 66.205 kb on - strand, within Ac3H11_4765at 66.236 kb on - strand, within Ac3H11_4765at 66.346 kb on - strandat 66.358 kb on - strandat 66.364 kb on - strandat 66.364 kb on - strandat 66.364 kb on - strandat 66.383 kb on - strandat 66.386 kb on - strandat 66.386 kb on - strandat 66.386 kb on - strandat 66.386 kb on - strandat 66.386 kb on - strandat 66.386 kb on - strandat 66.386 kb on - strandat 66.396 kb on - strandat 66.396 kb on - strandat 66.396 kb on - strandat 66.547 kb on - strandat 66.563 kb on - strand, within Ac3H11_4766at 66.563 kb on - strand, within Ac3H11_4766at 66.563 kb on - strand, within Ac3H11_4766at 66.563 kb on - strand, within Ac3H11_4766at 66.563 kb on - strand, within Ac3H11_4766at 66.563 kb on - strand, within Ac3H11_4766at 66.563 kb on - strand, within Ac3H11_4766at 66.567 kb on - strand, within Ac3H11_4766at 66.567 kb on - strand, within Ac3H11_4766at 66.584 kb on - strand, within Ac3H11_4766at 66.591 kb on - strand, within Ac3H11_4766at 66.620 kb on - strand, within Ac3H11_4766at 66.620 kb on - strand, within Ac3H11_4766at 66.620 kb on - strand, within Ac3H11_4766at 66.620 kb on - strand, within Ac3H11_4766at 66.640 kb on - strand, within Ac3H11_4766at 66.640 kb on - strand, within Ac3H11_4766at 66.640 kb on - strand, within Ac3H11_4766at 66.640 kb on - strand, within Ac3H11_4766at 66.640 kb on - strand, within Ac3H11_4766at 66.640 kb on - strand, within Ac3H11_4766at 66.640 kb on - strand, within Ac3H11_4766at 66.640 kb on - strand, within Ac3H11_4766at 66.640 kb on - strand, within Ac3H11_4766at 66.640 kb on - strand, within Ac3H11_4766at 66.640 kb on - strand, within Ac3H11_4766at 66.640 kb on - strand, within Ac3H11_4766at 66.642 kb on - strand, within Ac3H11_4766at 66.642 kb on - strand, within Ac3H11_4766at 66.642 kb on - strand, within Ac3H11_4766at 66.642 kb on - strand, within Ac3H11_4766at 66.656 kb on - strand, within Ac3H11_4766at 66.656 kb on - strand, within Ac3H11_4766at 66.780 kb on - strand, within Ac3H11_4766at 66.780 kb on - strand, within Ac3H11_4766at 66.780 kb on - strand, within Ac3H11_4766at 66.780 kb on - strand, within Ac3H11_4766at 66.780 kb on - strand, within Ac3H11_4766at 66.780 kb on - strand, within Ac3H11_4766at 66.780 kb on - strand, within Ac3H11_4766at 66.834 kb on - strand, within Ac3H11_4766at 66.834 kb on - strand, within Ac3H11_4766at 66.834 kb on - strand, within Ac3H11_4766at 67.077 kb on - strand, within Ac3H11_4766at 67.077 kb on - strand, within Ac3H11_4766at 67.079 kb on - strand, within Ac3H11_4766at 67.079 kb on - strand, within Ac3H11_4766at 67.079 kb on - strand, within Ac3H11_4766at 67.170 kb on + strand, within Ac3H11_4766at 67.171 kb on - strand, within Ac3H11_4766at 67.185 kb on + strand, within Ac3H11_4766at 67.185 kb on + strand, within Ac3H11_4766at 67.186 kb on - strand, within Ac3H11_4766at 67.186 kb on - strand, within Ac3H11_4766at 67.186 kb on - strand, within Ac3H11_4766at 67.186 kb on - strand, within Ac3H11_4766at 67.186 kb on - strand, within Ac3H11_4766at 67.186 kb on - strand, within Ac3H11_4766at 67.186 kb on - strand, within Ac3H11_4766at 67.197 kb on - strand, within Ac3H11_4766at 67.227 kb on - strand, within Ac3H11_4766at 67.227 kb on - strand, within Ac3H11_4766at 67.299 kb on + strand, within Ac3H11_4766at 67.299 kb on + strand, within Ac3H11_4766at 67.300 kb on - strand, within Ac3H11_4766at 67.300 kb on - strand, within Ac3H11_4766at 67.300 kb on - strand, within Ac3H11_4766at 67.300 kb on - strand, within Ac3H11_4766at 67.300 kb on - strand, within Ac3H11_4766at 67.300 kb on - strand, within Ac3H11_4766at 67.300 kb on - strand, within Ac3H11_4766

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
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64,272 + -0.3
64,272 + -3.4
64,272 + -1.4
64,272 + -2.5
64,272 + -2.0
64,272 + -3.7
64,273 - +0.4
64,273 - +0.5
64,273 - -0.1
64,273 - -0.3
64,273 - +0.1
64,273 - -0.0
65,145 - -2.2
65,178 - +1.3
65,178 - +1.4
65,178 - -2.7
65,178 - -0.2
65,178 - +0.4
65,178 - -0.3
65,178 - -1.2
65,178 - -1.5
65,178 - -0.6
65,178 - -2.4
65,178 - -1.3
65,178 - -2.2
65,178 - -2.5
65,283 - Ac3H11_4765 0.11 -0.7
65,448 - Ac3H11_4765 0.25 +0.1
65,448 - Ac3H11_4765 0.25 -0.3
65,448 - Ac3H11_4765 0.25 -0.2
65,588 - Ac3H11_4765 0.36 -2.9
65,588 - Ac3H11_4765 0.36 -0.2
65,588 - Ac3H11_4765 0.36 -1.6
65,588 - Ac3H11_4765 0.36 -0.8
65,588 - Ac3H11_4765 0.36 -1.9
65,666 - Ac3H11_4765 0.43 -1.8
65,666 - Ac3H11_4765 0.43 +0.6
65,666 - Ac3H11_4765 0.43 -0.3
65,666 - Ac3H11_4765 0.43 -0.3
65,666 - Ac3H11_4765 0.43 +1.2
65,668 - Ac3H11_4765 0.43 -1.1
65,668 - Ac3H11_4765 0.43 -1.2
65,713 - Ac3H11_4765 0.47 -2.1
65,844 - Ac3H11_4765 0.57 -0.4
65,844 - Ac3H11_4765 0.57 +0.2
65,844 - Ac3H11_4765 0.57 -0.5
65,895 - Ac3H11_4765 0.62 -0.3
65,895 - Ac3H11_4765 0.62 +0.2
65,895 - Ac3H11_4765 0.62 -0.3
65,895 - Ac3H11_4765 0.62 +0.9
65,895 - Ac3H11_4765 0.62 -0.3
65,895 - Ac3H11_4765 0.62 +0.9
65,895 - Ac3H11_4765 0.62 +0.4
65,895 - Ac3H11_4765 0.62 +0.8
65,899 - Ac3H11_4765 0.62 -0.9
65,899 - Ac3H11_4765 0.62 -0.5
65,899 - Ac3H11_4765 0.62 -0.1
65,899 - Ac3H11_4765 0.62 -0.5
65,959 - Ac3H11_4765 0.67 -1.1
65,964 - Ac3H11_4765 0.67 -0.4
65,988 - Ac3H11_4765 0.69 +0.1
65,988 - Ac3H11_4765 0.69 -0.9
65,988 - Ac3H11_4765 0.69 -0.3
66,040 - Ac3H11_4765 0.73 -0.3
66,040 - Ac3H11_4765 0.73 -0.7
66,050 - Ac3H11_4765 0.74 -0.4
66,050 - Ac3H11_4765 0.74 -1.9
66,205 - Ac3H11_4765 0.87 -0.7
66,236 - Ac3H11_4765 0.90 -0.6
66,346 - -0.8
66,358 - -2.1
66,364 - +1.0
66,364 - +2.7
66,364 - -0.1
66,383 - +2.2
66,386 - -0.2
66,386 - +1.2
66,386 - -0.8
66,386 - +0.4
66,386 - +0.2
66,386 - +0.9
66,386 - -0.2
66,396 - +1.1
66,396 - +1.5
66,396 - -0.4
66,547 - -1.0
66,563 - Ac3H11_4766 0.11 -0.1
66,563 - Ac3H11_4766 0.11 +0.2
66,563 - Ac3H11_4766 0.11 -0.6
66,563 - Ac3H11_4766 0.11 -1.1
66,563 - Ac3H11_4766 0.11 +0.6
66,563 - Ac3H11_4766 0.11 +0.7
66,563 - Ac3H11_4766 0.11 -1.3
66,567 - Ac3H11_4766 0.11 +1.2
66,567 - Ac3H11_4766 0.11 +0.6
66,584 - Ac3H11_4766 0.12 -0.1
66,591 - Ac3H11_4766 0.12 +0.4
66,620 - Ac3H11_4766 0.14 -2.4
66,620 - Ac3H11_4766 0.14 +0.3
66,620 - Ac3H11_4766 0.14 -0.2
66,620 - Ac3H11_4766 0.14 +0.9
66,640 - Ac3H11_4766 0.15 -0.0
66,640 - Ac3H11_4766 0.15 -1.5
66,640 - Ac3H11_4766 0.15 -0.4
66,640 - Ac3H11_4766 0.15 +0.5
66,640 - Ac3H11_4766 0.15 +0.5
66,640 - Ac3H11_4766 0.15 +0.6
66,640 - Ac3H11_4766 0.15 +0.5
66,640 - Ac3H11_4766 0.15 +0.8
66,640 - Ac3H11_4766 0.15 +1.3
66,640 - Ac3H11_4766 0.15 -2.8
66,640 - Ac3H11_4766 0.15 +1.5
66,640 - Ac3H11_4766 0.15 -0.5
66,642 - Ac3H11_4766 0.15 +0.7
66,642 - Ac3H11_4766 0.15 +0.2
66,642 - Ac3H11_4766 0.15 -0.4
66,642 - Ac3H11_4766 0.15 +0.3
66,656 - Ac3H11_4766 0.16 -0.7
66,656 - Ac3H11_4766 0.16 -0.1
66,780 - Ac3H11_4766 0.24 +0.5
66,780 - Ac3H11_4766 0.24 +0.3
66,780 - Ac3H11_4766 0.24 +1.3
66,780 - Ac3H11_4766 0.24 -0.2
66,780 - Ac3H11_4766 0.24 -2.8
66,780 - Ac3H11_4766 0.24 -0.2
66,780 - Ac3H11_4766 0.24 +0.6
66,834 - Ac3H11_4766 0.27 -0.3
66,834 - Ac3H11_4766 0.27 +0.4
66,834 - Ac3H11_4766 0.27 -0.6
67,077 - Ac3H11_4766 0.41 -0.4
67,077 - Ac3H11_4766 0.41 -0.1
67,079 - Ac3H11_4766 0.42 -0.2
67,079 - Ac3H11_4766 0.42 +1.2
67,079 - Ac3H11_4766 0.42 +0.1
67,170 + Ac3H11_4766 0.47 -1.5
67,171 - Ac3H11_4766 0.47 -0.5
67,185 + Ac3H11_4766 0.48 -0.3
67,185 + Ac3H11_4766 0.48 -1.7
67,186 - Ac3H11_4766 0.48 +0.4
67,186 - Ac3H11_4766 0.48 -0.7
67,186 - Ac3H11_4766 0.48 -1.4
67,186 - Ac3H11_4766 0.48 -2.1
67,186 - Ac3H11_4766 0.48 -2.6
67,186 - Ac3H11_4766 0.48 -0.8
67,186 - Ac3H11_4766 0.48 -2.0
67,197 - Ac3H11_4766 0.49 -1.3
67,227 - Ac3H11_4766 0.50 +0.0
67,227 - Ac3H11_4766 0.50 -0.5
67,299 + Ac3H11_4766 0.55 +0.4
67,299 + Ac3H11_4766 0.55 -2.0
67,300 - Ac3H11_4766 0.55 +0.8
67,300 - Ac3H11_4766 0.55 +1.2
67,300 - Ac3H11_4766 0.55 +1.3
67,300 - Ac3H11_4766 0.55 +0.3
67,300 - Ac3H11_4766 0.55 +0.4
67,300 - Ac3H11_4766 0.55 +0.5
67,300 - Ac3H11_4766 0.55 +0.0

Or see this region's nucleotide sequence