Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2683

Experiment: D-Gluconic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_2682 and Ac3H11_2683 are separated by 143 nucleotidesAc3H11_2683 and Ac3H11_2684 are separated by 76 nucleotides Ac3H11_2682 - Polyhydroxyalkanoic acid synthase, at 976,246 to 977,997 _2682 Ac3H11_2683 - Sodium/glutamate symporter, at 978,141 to 978,518 _2683 Ac3H11_2684 - Mobile element protein, at 978,595 to 980,133 _2684 Position (kb) 978 979Strain fitness (log2 ratio) -2 -1 0 1 2at 977.196 kb on + strand, within Ac3H11_2682at 977.196 kb on + strand, within Ac3H11_2682at 977.196 kb on + strand, within Ac3H11_2682at 977.196 kb on + strand, within Ac3H11_2682at 977.216 kb on + strand, within Ac3H11_2682at 977.217 kb on - strand, within Ac3H11_2682at 977.221 kb on + strand, within Ac3H11_2682at 977.221 kb on + strand, within Ac3H11_2682at 977.232 kb on + strand, within Ac3H11_2682at 977.233 kb on - strand, within Ac3H11_2682at 977.251 kb on + strand, within Ac3H11_2682at 977.251 kb on + strand, within Ac3H11_2682at 977.251 kb on + strand, within Ac3H11_2682at 977.251 kb on + strand, within Ac3H11_2682at 977.252 kb on - strand, within Ac3H11_2682at 977.252 kb on - strand, within Ac3H11_2682at 977.252 kb on - strand, within Ac3H11_2682at 977.252 kb on - strand, within Ac3H11_2682at 977.252 kb on - strand, within Ac3H11_2682at 977.252 kb on - strand, within Ac3H11_2682at 977.255 kb on + strand, within Ac3H11_2682at 977.255 kb on + strand, within Ac3H11_2682at 977.255 kb on + strand, within Ac3H11_2682at 977.255 kb on + strand, within Ac3H11_2682at 977.256 kb on - strand, within Ac3H11_2682at 977.256 kb on - strand, within Ac3H11_2682at 977.256 kb on - strand, within Ac3H11_2682at 977.256 kb on - strand, within Ac3H11_2682at 977.256 kb on - strand, within Ac3H11_2682at 977.256 kb on - strand, within Ac3H11_2682at 977.256 kb on - strand, within Ac3H11_2682at 977.256 kb on - strand, within Ac3H11_2682at 977.256 kb on - strand, within Ac3H11_2682at 977.256 kb on - strand, within Ac3H11_2682at 977.256 kb on - strand, within Ac3H11_2682at 977.256 kb on - strand, within Ac3H11_2682at 977.256 kb on - strand, within Ac3H11_2682at 977.258 kb on + strand, within Ac3H11_2682at 977.258 kb on + strand, within Ac3H11_2682at 977.258 kb on + strand, within Ac3H11_2682at 977.258 kb on + strand, within Ac3H11_2682at 977.258 kb on + strand, within Ac3H11_2682at 977.258 kb on + strand, within Ac3H11_2682at 977.259 kb on - strand, within Ac3H11_2682at 977.259 kb on - strand, within Ac3H11_2682at 977.324 kb on + strand, within Ac3H11_2682at 977.325 kb on - strand, within Ac3H11_2682at 977.325 kb on - strand, within Ac3H11_2682at 977.380 kb on + strand, within Ac3H11_2682at 977.431 kb on + strand, within Ac3H11_2682at 977.477 kb on - strand, within Ac3H11_2682at 977.783 kb on - strand, within Ac3H11_2682at 977.854 kb on + strandat 977.855 kb on - strandat 977.905 kb on - strandat 978.003 kb on - strandat 978.003 kb on - strandat 978.005 kb on + strandat 978.005 kb on + strandat 978.005 kb on + strandat 978.012 kb on - strandat 978.012 kb on - strandat 978.025 kb on + strandat 978.025 kb on + strandat 978.025 kb on + strandat 978.025 kb on + strandat 978.026 kb on - strandat 978.026 kb on - strandat 978.026 kb on - strandat 978.026 kb on - strandat 978.104 kb on + strandat 978.104 kb on + strandat 978.104 kb on + strandat 978.104 kb on + strandat 978.104 kb on + strandat 978.104 kb on + strandat 978.104 kb on + strandat 978.104 kb on + strandat 978.105 kb on - strandat 978.105 kb on - strandat 978.105 kb on - strandat 978.105 kb on - strandat 978.105 kb on - strandat 978.105 kb on - strandat 978.105 kb on - strandat 978.105 kb on - strandat 978.105 kb on - strandat 978.105 kb on - strandat 978.162 kb on + strandat 978.163 kb on - strandat 978.163 kb on - strandat 978.163 kb on - strandat 978.198 kb on + strand, within Ac3H11_2683at 978.199 kb on - strand, within Ac3H11_2683at 978.199 kb on - strand, within Ac3H11_2683at 978.199 kb on - strand, within Ac3H11_2683at 978.281 kb on + strand, within Ac3H11_2683at 978.282 kb on - strand, within Ac3H11_2683at 978.282 kb on - strand, within Ac3H11_2683at 978.297 kb on - strand, within Ac3H11_2683at 978.331 kb on + strand, within Ac3H11_2683at 978.332 kb on - strand, within Ac3H11_2683at 978.580 kb on - strandat 978.582 kb on + strandat 978.582 kb on + strandat 978.583 kb on - strandat 978.583 kb on - strandat 978.583 kb on - strandat 978.583 kb on - strandat 978.583 kb on - strandat 978.583 kb on - strandat 978.583 kb on - strandat 978.589 kb on + strandat 978.589 kb on + strandat 978.590 kb on - strandat 978.598 kb on + strandat 978.599 kb on - strandat 978.599 kb on - strandat 978.599 kb on - strandat 978.604 kb on + strandat 978.605 kb on - strandat 978.634 kb on + strandat 978.635 kb on - strandat 978.635 kb on - strandat 978.635 kb on - strandat 978.752 kb on - strand, within Ac3H11_2684at 978.808 kb on + strand, within Ac3H11_2684at 978.808 kb on + strand, within Ac3H11_2684at 978.809 kb on - strand, within Ac3H11_2684at 978.809 kb on - strand, within Ac3H11_2684at 978.809 kb on - strand, within Ac3H11_2684at 978.946 kb on + strand, within Ac3H11_2684at 978.947 kb on - strand, within Ac3H11_2684at 979.048 kb on + strand, within Ac3H11_2684at 979.048 kb on + strand, within Ac3H11_2684at 979.049 kb on - strand, within Ac3H11_2684at 979.049 kb on - strand, within Ac3H11_2684at 979.157 kb on + strand, within Ac3H11_2684at 979.223 kb on + strand, within Ac3H11_2684at 979.303 kb on + strand, within Ac3H11_2684at 979.303 kb on + strand, within Ac3H11_2684at 979.303 kb on + strand, within Ac3H11_2684at 979.303 kb on + strand, within Ac3H11_2684at 979.344 kb on + strand, within Ac3H11_2684at 979.344 kb on + strand, within Ac3H11_2684at 979.345 kb on - strand, within Ac3H11_2684at 979.345 kb on - strand, within Ac3H11_2684at 979.352 kb on - strand, within Ac3H11_2684at 979.357 kb on + strand, within Ac3H11_2684at 979.358 kb on - strand, within Ac3H11_2684at 979.358 kb on - strandat 979.390 kb on + strand, within Ac3H11_2684at 979.390 kb on + strand, within Ac3H11_2684at 979.390 kb on + strand, within Ac3H11_2684at 979.390 kb on + strand, within Ac3H11_2684at 979.390 kb on + strand, within Ac3H11_2684at 979.390 kb on + strand, within Ac3H11_2684at 979.390 kb on + strand, within Ac3H11_2684at 979.390 kb on + strand, within Ac3H11_2684at 979.391 kb on - strand, within Ac3H11_2684at 979.391 kb on - strand, within Ac3H11_2684at 979.391 kb on - strand, within Ac3H11_2684at 979.444 kb on + strand, within Ac3H11_2684at 979.444 kb on + strand, within Ac3H11_2684at 979.444 kb on + strand, within Ac3H11_2684at 979.451 kb on - strand, within Ac3H11_2684at 979.508 kb on + strand, within Ac3H11_2684at 979.509 kb on - strand, within Ac3H11_2684

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
remove
977,196 + Ac3H11_2682 0.54 -1.5
977,196 + Ac3H11_2682 0.54 -0.7
977,196 + Ac3H11_2682 0.54 +0.6
977,196 + Ac3H11_2682 0.54 +0.4
977,216 + Ac3H11_2682 0.55 +0.1
977,217 - Ac3H11_2682 0.55 +0.5
977,221 + Ac3H11_2682 0.56 +0.5
977,221 + Ac3H11_2682 0.56 +1.1
977,232 + Ac3H11_2682 0.56 -1.0
977,233 - Ac3H11_2682 0.56 +0.5
977,251 + Ac3H11_2682 0.57 +0.9
977,251 + Ac3H11_2682 0.57 -0.7
977,251 + Ac3H11_2682 0.57 +1.3
977,251 + Ac3H11_2682 0.57 +0.5
977,252 - Ac3H11_2682 0.57 +0.8
977,252 - Ac3H11_2682 0.57 +0.7
977,252 - Ac3H11_2682 0.57 -0.2
977,252 - Ac3H11_2682 0.57 -1.0
977,252 - Ac3H11_2682 0.57 +0.1
977,252 - Ac3H11_2682 0.57 -0.5
977,255 + Ac3H11_2682 0.58 -0.2
977,255 + Ac3H11_2682 0.58 -0.3
977,255 + Ac3H11_2682 0.58 -1.1
977,255 + Ac3H11_2682 0.58 +0.3
977,256 - Ac3H11_2682 0.58 -0.7
977,256 - Ac3H11_2682 0.58 +0.9
977,256 - Ac3H11_2682 0.58 +0.6
977,256 - Ac3H11_2682 0.58 +0.2
977,256 - Ac3H11_2682 0.58 +0.3
977,256 - Ac3H11_2682 0.58 +0.7
977,256 - Ac3H11_2682 0.58 -0.2
977,256 - Ac3H11_2682 0.58 -1.4
977,256 - Ac3H11_2682 0.58 +0.2
977,256 - Ac3H11_2682 0.58 -0.2
977,256 - Ac3H11_2682 0.58 -1.4
977,256 - Ac3H11_2682 0.58 +0.4
977,256 - Ac3H11_2682 0.58 -0.7
977,258 + Ac3H11_2682 0.58 -0.5
977,258 + Ac3H11_2682 0.58 +0.5
977,258 + Ac3H11_2682 0.58 -0.7
977,258 + Ac3H11_2682 0.58 -0.5
977,258 + Ac3H11_2682 0.58 +0.5
977,258 + Ac3H11_2682 0.58 -0.3
977,259 - Ac3H11_2682 0.58 +0.8
977,259 - Ac3H11_2682 0.58 +0.5
977,324 + Ac3H11_2682 0.62 -1.4
977,325 - Ac3H11_2682 0.62 -0.2
977,325 - Ac3H11_2682 0.62 -1.2
977,380 + Ac3H11_2682 0.65 +0.6
977,431 + Ac3H11_2682 0.68 -0.7
977,477 - Ac3H11_2682 0.70 -0.8
977,783 - Ac3H11_2682 0.88 +0.9
977,854 + +1.1
977,855 - +0.3
977,905 - -0.1
978,003 - -1.7
978,003 - +1.0
978,005 + -0.5
978,005 + -1.0
978,005 + +0.7
978,012 - -0.3
978,012 - +0.4
978,025 + -2.0
978,025 + -0.5
978,025 + +0.9
978,025 + +1.3
978,026 - +0.7
978,026 - -0.4
978,026 - +0.7
978,026 - -0.3
978,104 + -0.6
978,104 + -0.8
978,104 + -0.9
978,104 + -0.6
978,104 + +1.1
978,104 + +0.1
978,104 + +0.2
978,104 + -0.6
978,105 - +0.5
978,105 - +0.7
978,105 - -0.9
978,105 - +0.2
978,105 - +0.2
978,105 - -1.1
978,105 - -0.4
978,105 - -0.7
978,105 - +0.3
978,105 - +0.6
978,162 + +1.6
978,163 - +0.3
978,163 - +0.1
978,163 - -0.5
978,198 + Ac3H11_2683 0.15 -0.3
978,199 - Ac3H11_2683 0.15 +1.3
978,199 - Ac3H11_2683 0.15 +1.8
978,199 - Ac3H11_2683 0.15 +0.9
978,281 + Ac3H11_2683 0.37 -1.3
978,282 - Ac3H11_2683 0.37 -0.1
978,282 - Ac3H11_2683 0.37 -0.9
978,297 - Ac3H11_2683 0.41 -0.3
978,331 + Ac3H11_2683 0.50 +0.4
978,332 - Ac3H11_2683 0.51 +1.1
978,580 - -0.6
978,582 + -0.7
978,582 + +0.3
978,583 - +0.8
978,583 - +0.5
978,583 - -0.6
978,583 - -0.6
978,583 - +1.2
978,583 - -0.2
978,583 - +0.8
978,589 + -0.7
978,589 + -0.2
978,590 - -0.5
978,598 + -0.1
978,599 - +0.0
978,599 - +0.3
978,599 - +1.0
978,604 + -0.4
978,605 - -0.1
978,634 + -0.4
978,635 - -0.3
978,635 - +0.3
978,635 - +0.6
978,752 - Ac3H11_2684 0.10 +0.6
978,808 + Ac3H11_2684 0.14 +0.0
978,808 + Ac3H11_2684 0.14 -0.6
978,809 - Ac3H11_2684 0.14 -0.2
978,809 - Ac3H11_2684 0.14 +1.0
978,809 - Ac3H11_2684 0.14 +0.8
978,946 + Ac3H11_2684 0.23 -0.1
978,947 - Ac3H11_2684 0.23 +0.0
979,048 + Ac3H11_2684 0.29 -0.1
979,048 + Ac3H11_2684 0.29 -0.7
979,049 - Ac3H11_2684 0.29 -0.8
979,049 - Ac3H11_2684 0.29 -0.4
979,157 + Ac3H11_2684 0.37 -0.1
979,223 + Ac3H11_2684 0.41 -0.7
979,303 + Ac3H11_2684 0.46 +0.4
979,303 + Ac3H11_2684 0.46 -0.8
979,303 + Ac3H11_2684 0.46 +0.1
979,303 + Ac3H11_2684 0.46 +0.3
979,344 + Ac3H11_2684 0.49 +1.3
979,344 + Ac3H11_2684 0.49 +0.1
979,345 - Ac3H11_2684 0.49 -0.2
979,345 - Ac3H11_2684 0.49 -0.6
979,352 - Ac3H11_2684 0.49 -0.3
979,357 + Ac3H11_2684 0.50 +0.3
979,358 - Ac3H11_2684 0.50 +1.4
979,358 - -0.5
979,390 + Ac3H11_2684 0.52 -0.4
979,390 + Ac3H11_2684 0.52 -0.4
979,390 + Ac3H11_2684 0.52 -0.2
979,390 + Ac3H11_2684 0.52 +1.8
979,390 + Ac3H11_2684 0.52 -0.1
979,390 + Ac3H11_2684 0.52 +0.5
979,390 + Ac3H11_2684 0.52 +0.5
979,390 + Ac3H11_2684 0.52 +0.3
979,391 - Ac3H11_2684 0.52 +0.3
979,391 - Ac3H11_2684 0.52 -0.4
979,391 - Ac3H11_2684 0.52 +0.1
979,444 + Ac3H11_2684 0.55 -0.0
979,444 + Ac3H11_2684 0.55 +0.5
979,444 + Ac3H11_2684 0.55 +0.7
979,451 - Ac3H11_2684 0.56 -0.1
979,508 + Ac3H11_2684 0.59 +0.5
979,509 - Ac3H11_2684 0.59 +0.1

Or see this region's nucleotide sequence