Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2599

Experiment: D-Gluconic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2598 and Ac3H11_2599 are separated by 93 nucleotidesAc3H11_2599 and Ac3H11_2600 are separated by 4 nucleotides Ac3H11_2598 - DNA recombination protein RmuC, at 879,703 to 881,406 _2598 Ac3H11_2599 - Glyoxylate reductase (EC 1.1.1.79) / Glyoxylate reductase (EC 1.1.1.26) / Hydroxypyruvate reductase (EC 1.1.1.81); 2-ketoaldonate reductase, broad specificity (EC 1.1.1.215) (EC 1.1.1.-), at 881,500 to 882,489 _2599 Ac3H11_2600 - Probable transmembrane protein, at 882,494 to 883,921 _2600 Position (kb) 881 882 883Strain fitness (log2 ratio) -3 -2 -1 0 1at 881.435 kb on - strandat 881.452 kb on + strandat 881.853 kb on - strand, within Ac3H11_2599at 881.909 kb on + strand, within Ac3H11_2599at 881.909 kb on + strand, within Ac3H11_2599at 881.909 kb on + strand, within Ac3H11_2599at 881.909 kb on + strand, within Ac3H11_2599at 881.909 kb on + strand, within Ac3H11_2599at 881.909 kb on + strand, within Ac3H11_2599at 881.910 kb on - strand, within Ac3H11_2599at 881.910 kb on - strand, within Ac3H11_2599at 881.910 kb on - strand, within Ac3H11_2599at 881.910 kb on - strand, within Ac3H11_2599at 881.910 kb on - strand, within Ac3H11_2599at 881.910 kb on - strand, within Ac3H11_2599at 881.910 kb on - strand, within Ac3H11_2599at 881.910 kb on - strand, within Ac3H11_2599at 881.910 kb on - strand, within Ac3H11_2599at 881.910 kb on - strand, within Ac3H11_2599at 881.963 kb on + strand, within Ac3H11_2599at 881.963 kb on + strand, within Ac3H11_2599at 881.963 kb on + strand, within Ac3H11_2599at 881.963 kb on + strand, within Ac3H11_2599at 881.964 kb on - strand, within Ac3H11_2599at 881.964 kb on - strand, within Ac3H11_2599at 881.964 kb on - strand, within Ac3H11_2599at 881.964 kb on - strand, within Ac3H11_2599at 882.080 kb on + strand, within Ac3H11_2599at 882.080 kb on + strand, within Ac3H11_2599at 882.080 kb on + strand, within Ac3H11_2599at 882.080 kb on + strand, within Ac3H11_2599at 882.081 kb on - strand, within Ac3H11_2599at 882.081 kb on - strand, within Ac3H11_2599at 882.113 kb on + strand, within Ac3H11_2599at 882.114 kb on - strand, within Ac3H11_2599at 882.114 kb on - strand, within Ac3H11_2599at 882.114 kb on - strand, within Ac3H11_2599at 882.254 kb on + strand, within Ac3H11_2599at 882.496 kb on - strandat 882.561 kb on + strandat 882.562 kb on - strandat 882.562 kb on - strandat 882.584 kb on + strandat 882.639 kb on + strand, within Ac3H11_2600at 882.639 kb on + strand, within Ac3H11_2600at 882.639 kb on + strand, within Ac3H11_2600at 882.639 kb on + strand, within Ac3H11_2600at 882.639 kb on + strand, within Ac3H11_2600at 882.639 kb on + strand, within Ac3H11_2600at 882.640 kb on - strand, within Ac3H11_2600at 882.640 kb on - strand, within Ac3H11_2600at 882.640 kb on - strand, within Ac3H11_2600at 882.640 kb on - strand, within Ac3H11_2600at 882.640 kb on - strand, within Ac3H11_2600at 882.640 kb on - strand, within Ac3H11_2600at 882.640 kb on - strand, within Ac3H11_2600at 882.640 kb on - strand, within Ac3H11_2600at 882.640 kb on - strand, within Ac3H11_2600at 882.640 kb on - strand, within Ac3H11_2600at 882.640 kb on - strand, within Ac3H11_2600at 882.640 kb on - strand, within Ac3H11_2600at 882.640 kb on - strand, within Ac3H11_2600at 882.750 kb on + strand, within Ac3H11_2600at 882.750 kb on + strand, within Ac3H11_2600at 882.751 kb on - strand, within Ac3H11_2600at 882.751 kb on - strand, within Ac3H11_2600at 882.751 kb on - strand, within Ac3H11_2600at 882.751 kb on - strand, within Ac3H11_2600at 882.801 kb on + strand, within Ac3H11_2600at 882.801 kb on + strand, within Ac3H11_2600at 882.801 kb on + strand, within Ac3H11_2600at 882.801 kb on + strand, within Ac3H11_2600at 882.801 kb on + strand, within Ac3H11_2600at 882.802 kb on - strand, within Ac3H11_2600at 882.802 kb on - strand, within Ac3H11_2600at 882.802 kb on - strand, within Ac3H11_2600at 882.802 kb on - strand, within Ac3H11_2600at 882.802 kb on - strand, within Ac3H11_2600at 883.221 kb on + strand, within Ac3H11_2600at 883.221 kb on + strand, within Ac3H11_2600at 883.221 kb on + strand, within Ac3H11_2600at 883.221 kb on + strand, within Ac3H11_2600at 883.222 kb on - strand, within Ac3H11_2600at 883.222 kb on - strand, within Ac3H11_2600at 883.222 kb on - strand, within Ac3H11_2600at 883.222 kb on - strand, within Ac3H11_2600at 883.222 kb on - strand, within Ac3H11_2600at 883.222 kb on - strand, within Ac3H11_2600at 883.224 kb on + strand, within Ac3H11_2600at 883.225 kb on - strand, within Ac3H11_2600

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
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881,435 - +0.4
881,452 + +0.7
881,853 - Ac3H11_2599 0.36 +0.1
881,909 + Ac3H11_2599 0.41 -0.0
881,909 + Ac3H11_2599 0.41 +0.4
881,909 + Ac3H11_2599 0.41 -1.5
881,909 + Ac3H11_2599 0.41 -1.5
881,909 + Ac3H11_2599 0.41 -0.6
881,909 + Ac3H11_2599 0.41 +0.5
881,910 - Ac3H11_2599 0.41 -2.0
881,910 - Ac3H11_2599 0.41 +0.8
881,910 - Ac3H11_2599 0.41 -1.2
881,910 - Ac3H11_2599 0.41 +0.1
881,910 - Ac3H11_2599 0.41 -0.3
881,910 - Ac3H11_2599 0.41 -1.4
881,910 - Ac3H11_2599 0.41 -1.0
881,910 - Ac3H11_2599 0.41 +0.9
881,910 - Ac3H11_2599 0.41 -0.3
881,910 - Ac3H11_2599 0.41 -0.1
881,963 + Ac3H11_2599 0.47 -0.1
881,963 + Ac3H11_2599 0.47 -0.3
881,963 + Ac3H11_2599 0.47 +0.4
881,963 + Ac3H11_2599 0.47 -0.7
881,964 - Ac3H11_2599 0.47 -0.1
881,964 - Ac3H11_2599 0.47 +0.5
881,964 - Ac3H11_2599 0.47 +0.0
881,964 - Ac3H11_2599 0.47 -0.2
882,080 + Ac3H11_2599 0.59 -0.8
882,080 + Ac3H11_2599 0.59 -2.2
882,080 + Ac3H11_2599 0.59 -0.6
882,080 + Ac3H11_2599 0.59 +0.5
882,081 - Ac3H11_2599 0.59 +0.4
882,081 - Ac3H11_2599 0.59 -0.0
882,113 + Ac3H11_2599 0.62 -0.7
882,114 - Ac3H11_2599 0.62 +0.2
882,114 - Ac3H11_2599 0.62 +0.2
882,114 - Ac3H11_2599 0.62 +1.0
882,254 + Ac3H11_2599 0.76 -0.3
882,496 - +0.1
882,561 + -1.7
882,562 - -2.9
882,562 - -1.1
882,584 + -3.0
882,639 + Ac3H11_2600 0.10 -1.9
882,639 + Ac3H11_2600 0.10 -1.2
882,639 + Ac3H11_2600 0.10 -1.5
882,639 + Ac3H11_2600 0.10 -2.7
882,639 + Ac3H11_2600 0.10 -2.1
882,639 + Ac3H11_2600 0.10 +0.8
882,640 - Ac3H11_2600 0.10 -1.5
882,640 - Ac3H11_2600 0.10 +0.4
882,640 - Ac3H11_2600 0.10 -1.1
882,640 - Ac3H11_2600 0.10 -2.4
882,640 - Ac3H11_2600 0.10 -2.8
882,640 - Ac3H11_2600 0.10 -1.5
882,640 - Ac3H11_2600 0.10 -0.6
882,640 - Ac3H11_2600 0.10 -0.8
882,640 - Ac3H11_2600 0.10 -1.3
882,640 - Ac3H11_2600 0.10 -2.6
882,640 - Ac3H11_2600 0.10 +0.4
882,640 - Ac3H11_2600 0.10 -0.1
882,640 - Ac3H11_2600 0.10 -2.4
882,750 + Ac3H11_2600 0.18 -2.8
882,750 + Ac3H11_2600 0.18 -1.1
882,751 - Ac3H11_2600 0.18 -0.1
882,751 - Ac3H11_2600 0.18 -1.1
882,751 - Ac3H11_2600 0.18 -1.6
882,751 - Ac3H11_2600 0.18 -1.0
882,801 + Ac3H11_2600 0.21 -1.9
882,801 + Ac3H11_2600 0.21 -3.6
882,801 + Ac3H11_2600 0.21 -1.2
882,801 + Ac3H11_2600 0.21 -1.9
882,801 + Ac3H11_2600 0.21 -2.1
882,802 - Ac3H11_2600 0.22 -0.2
882,802 - Ac3H11_2600 0.22 -2.8
882,802 - Ac3H11_2600 0.22 -2.1
882,802 - Ac3H11_2600 0.22 -1.8
882,802 - Ac3H11_2600 0.22 -0.6
883,221 + Ac3H11_2600 0.51 -2.7
883,221 + Ac3H11_2600 0.51 -0.5
883,221 + Ac3H11_2600 0.51 -2.0
883,221 + Ac3H11_2600 0.51 -3.5
883,222 - Ac3H11_2600 0.51 -1.8
883,222 - Ac3H11_2600 0.51 -0.9
883,222 - Ac3H11_2600 0.51 -1.0
883,222 - Ac3H11_2600 0.51 -1.8
883,222 - Ac3H11_2600 0.51 -1.8
883,222 - Ac3H11_2600 0.51 -1.0
883,224 + Ac3H11_2600 0.51 -0.0
883,225 - Ac3H11_2600 0.51 -1.4

Or see this region's nucleotide sequence