Experiment: D-Gluconic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_2287 and Ac3H11_2288 are separated by 255 nucleotides Ac3H11_2288 and Ac3H11_2289 overlap by 14 nucleotides Ac3H11_2289 and Ac3H11_2290 are separated by 56 nucleotides
Ac3H11_2287 - HD-GYP domain, at 524,058 to 525,449
_2287
Ac3H11_2288 - tRNA dihydrouridine synthase A, at 525,705 to 526,721
_2288
Ac3H11_2289 - Ribosomal-protein-S5p-alanine acetyltransferase, at 526,708 to 527,274
_2289
Ac3H11_2290 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 527,331 to 530,090
_2290
Position (kb) 525
526
527 Strain fitness (log2 ratio) -2
-1
0
1
2 at 525.132 kb on + strand, within Ac3H11_2287 at 525.132 kb on + strand, within Ac3H11_2287 at 525.132 kb on + strand, within Ac3H11_2287 at 525.132 kb on + strand, within Ac3H11_2287 at 525.132 kb on + strand, within Ac3H11_2287 at 525.132 kb on + strand, within Ac3H11_2287 at 525.132 kb on + strand, within Ac3H11_2287 at 525.133 kb on - strand, within Ac3H11_2287 at 525.133 kb on - strand, within Ac3H11_2287 at 525.133 kb on - strand, within Ac3H11_2287 at 525.136 kb on + strand, within Ac3H11_2287 at 525.136 kb on + strand, within Ac3H11_2287 at 525.136 kb on + strand, within Ac3H11_2287 at 525.136 kb on + strand, within Ac3H11_2287 at 525.136 kb on + strand, within Ac3H11_2287 at 525.136 kb on + strand, within Ac3H11_2287 at 525.137 kb on - strand, within Ac3H11_2287 at 525.137 kb on - strand, within Ac3H11_2287 at 525.137 kb on - strand, within Ac3H11_2287 at 525.137 kb on - strand, within Ac3H11_2287 at 525.172 kb on + strand, within Ac3H11_2287 at 525.172 kb on + strand, within Ac3H11_2287 at 525.172 kb on + strand, within Ac3H11_2287 at 525.172 kb on + strand, within Ac3H11_2287 at 525.173 kb on - strand, within Ac3H11_2287 at 525.173 kb on - strand, within Ac3H11_2287 at 525.173 kb on - strand, within Ac3H11_2287 at 525.173 kb on - strand, within Ac3H11_2287 at 525.173 kb on - strand, within Ac3H11_2287 at 525.289 kb on + strand, within Ac3H11_2287 at 525.289 kb on + strand, within Ac3H11_2287 at 525.289 kb on + strand, within Ac3H11_2287 at 525.289 kb on + strand, within Ac3H11_2287 at 525.290 kb on - strand, within Ac3H11_2287 at 525.290 kb on - strand, within Ac3H11_2287 at 525.290 kb on - strand, within Ac3H11_2287 at 525.290 kb on - strand, within Ac3H11_2287 at 525.320 kb on + strand at 525.320 kb on + strand at 525.320 kb on + strand at 525.320 kb on + strand at 525.320 kb on + strand at 525.320 kb on + strand at 525.321 kb on - strand at 525.321 kb on - strand at 525.321 kb on - strand at 525.321 kb on - strand at 525.321 kb on - strand at 525.324 kb on + strand at 525.324 kb on + strand at 525.325 kb on - strand at 525.325 kb on - strand at 525.325 kb on - strand at 525.325 kb on - strand at 525.325 kb on - strand at 525.325 kb on - strand at 525.325 kb on - strand at 525.325 kb on - strand at 525.356 kb on + strand at 525.356 kb on + strand at 525.356 kb on + strand at 525.356 kb on + strand at 525.356 kb on + strand at 525.356 kb on + strand at 525.357 kb on - strand at 525.357 kb on - strand at 525.357 kb on - strand at 525.357 kb on - strand at 525.378 kb on + strand at 525.378 kb on + strand at 525.378 kb on + strand at 525.378 kb on + strand at 525.379 kb on - strand at 525.379 kb on - strand at 525.379 kb on - strand at 525.379 kb on - strand at 525.382 kb on + strand at 525.382 kb on + strand at 525.382 kb on + strand at 525.382 kb on + strand at 525.382 kb on + strand at 525.382 kb on + strand at 525.382 kb on + strand at 525.382 kb on + strand at 525.382 kb on + strand at 525.382 kb on + strand at 525.382 kb on + strand at 525.382 kb on + strand at 525.382 kb on + strand at 525.383 kb on - strand at 525.383 kb on - strand at 525.383 kb on - strand at 525.383 kb on - strand at 525.383 kb on - strand at 525.383 kb on - strand at 525.383 kb on - strand at 525.383 kb on - strand at 525.383 kb on - strand at 525.383 kb on - strand at 525.383 kb on - strand at 525.399 kb on + strand at 525.399 kb on + strand at 525.399 kb on + strand at 525.400 kb on - strand at 525.401 kb on + strand at 525.401 kb on + strand at 525.401 kb on + strand at 525.408 kb on - strand at 525.414 kb on - strand at 525.434 kb on + strand at 525.434 kb on + strand at 525.434 kb on + strand at 525.434 kb on + strand at 525.435 kb on - strand at 525.449 kb on + strand at 525.449 kb on + strand at 525.585 kb on + strand at 525.585 kb on + strand at 525.585 kb on + strand at 525.585 kb on + strand at 525.585 kb on + strand at 525.585 kb on + strand at 525.585 kb on + strand at 525.585 kb on + strand at 525.586 kb on - strand at 525.586 kb on - strand at 525.586 kb on - strand at 525.586 kb on - strand at 525.586 kb on - strand at 525.586 kb on - strand at 525.599 kb on - strand at 525.622 kb on + strand at 525.622 kb on + strand at 525.622 kb on + strand at 525.622 kb on + strand at 525.622 kb on + strand at 525.622 kb on + strand at 525.622 kb on + strand at 525.623 kb on - strand at 525.623 kb on - strand at 525.623 kb on - strand at 525.623 kb on - strand at 525.679 kb on + strand at 525.679 kb on + strand at 525.680 kb on - strand at 525.680 kb on - strand at 525.680 kb on - strand at 525.750 kb on + strand at 525.786 kb on + strand at 525.786 kb on + strand at 525.786 kb on + strand at 525.786 kb on + strand at 525.787 kb on - strand at 525.787 kb on - strand at 525.787 kb on - strand at 525.787 kb on - strand at 525.787 kb on - strand at 525.917 kb on + strand, within Ac3H11_2288 at 525.918 kb on - strand, within Ac3H11_2288 at 526.049 kb on + strand, within Ac3H11_2288 at 526.050 kb on - strand, within Ac3H11_2288 at 526.050 kb on - strand, within Ac3H11_2288 at 526.117 kb on - strand, within Ac3H11_2288 at 526.377 kb on + strand, within Ac3H11_2288 at 526.377 kb on + strand, within Ac3H11_2288 at 526.416 kb on + strand, within Ac3H11_2288 at 526.416 kb on + strand, within Ac3H11_2288 at 526.416 kb on + strand, within Ac3H11_2288 at 526.416 kb on + strand, within Ac3H11_2288 at 526.416 kb on + strand, within Ac3H11_2288 at 526.417 kb on - strand, within Ac3H11_2288 at 526.417 kb on - strand, within Ac3H11_2288 at 526.417 kb on - strand, within Ac3H11_2288 at 526.417 kb on - strand, within Ac3H11_2288 at 526.417 kb on - strand, within Ac3H11_2288 at 526.417 kb on - strand, within Ac3H11_2288 at 526.417 kb on - strand, within Ac3H11_2288 at 526.420 kb on - strand, within Ac3H11_2288 at 526.420 kb on - strand, within Ac3H11_2288 at 526.476 kb on + strand, within Ac3H11_2288 at 526.476 kb on + strand, within Ac3H11_2288 at 526.476 kb on + strand, within Ac3H11_2288 at 526.476 kb on + strand, within Ac3H11_2288 at 526.476 kb on + strand, within Ac3H11_2288 at 526.477 kb on - strand, within Ac3H11_2288 at 526.477 kb on - strand, within Ac3H11_2288 at 526.477 kb on - strand, within Ac3H11_2288 at 526.477 kb on - strand, within Ac3H11_2288 at 526.647 kb on + strand at 526.647 kb on + strand at 526.647 kb on + strand at 526.647 kb on + strand at 526.647 kb on + strand at 526.647 kb on + strand at 526.648 kb on - strand at 526.648 kb on - strand at 526.648 kb on - strand at 526.648 kb on - strand at 526.648 kb on - strand at 526.662 kb on + strand at 526.813 kb on - strand, within Ac3H11_2289 at 526.891 kb on + strand, within Ac3H11_2289 at 526.891 kb on + strand, within Ac3H11_2289 at 526.891 kb on + strand, within Ac3H11_2289 at 526.891 kb on + strand, within Ac3H11_2289 at 526.892 kb on - strand, within Ac3H11_2289 at 526.892 kb on - strand, within Ac3H11_2289 at 526.892 kb on - strand, within Ac3H11_2289 at 526.892 kb on - strand, within Ac3H11_2289 at 526.924 kb on + strand, within Ac3H11_2289 at 526.925 kb on - strand, within Ac3H11_2289 at 526.925 kb on - strand, within Ac3H11_2289 at 526.925 kb on - strand, within Ac3H11_2289 at 527.024 kb on - strand, within Ac3H11_2289 at 527.024 kb on - strand, within Ac3H11_2289 at 527.032 kb on + strand, within Ac3H11_2289 at 527.032 kb on + strand, within Ac3H11_2289 at 527.033 kb on - strand, within Ac3H11_2289 at 527.035 kb on + strand, within Ac3H11_2289 at 527.035 kb on + strand, within Ac3H11_2289 at 527.035 kb on + strand, within Ac3H11_2289 at 527.036 kb on - strand, within Ac3H11_2289 at 527.036 kb on - strand, within Ac3H11_2289 at 527.051 kb on - strand, within Ac3H11_2289 at 527.081 kb on + strand, within Ac3H11_2289 at 527.082 kb on - strand, within Ac3H11_2289 at 527.082 kb on - strand, within Ac3H11_2289 at 527.082 kb on - strand, within Ac3H11_2289 at 527.082 kb on - strand, within Ac3H11_2289 at 527.154 kb on + strand, within Ac3H11_2289 at 527.154 kb on + strand, within Ac3H11_2289 at 527.155 kb on - strand, within Ac3H11_2289 at 527.163 kb on + strand, within Ac3H11_2289 at 527.164 kb on - strand, within Ac3H11_2289 at 527.164 kb on - strand, within Ac3H11_2289 at 527.215 kb on + strand, within Ac3H11_2289 at 527.276 kb on + strand at 527.301 kb on + strand at 527.301 kb on + strand at 527.301 kb on + strand at 527.302 kb on - strand at 527.302 kb on - strand at 527.332 kb on + strand at 527.332 kb on + strand at 527.332 kb on + strand at 527.333 kb on - strand at 527.333 kb on - strand at 527.333 kb on - strand at 527.383 kb on + strand at 527.587 kb on + strand at 527.587 kb on + strand at 527.587 kb on + strand at 527.587 kb on + strand at 527.587 kb on + strand at 527.602 kb on + strand at 527.603 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Gluconic Acid (C) remove 525,132 + Ac3H11_2287 0.77 +0.4 525,132 + Ac3H11_2287 0.77 -1.0 525,132 + Ac3H11_2287 0.77 +1.2 525,132 + Ac3H11_2287 0.77 +0.0 525,132 + Ac3H11_2287 0.77 -1.3 525,132 + Ac3H11_2287 0.77 +0.8 525,132 + Ac3H11_2287 0.77 +0.7 525,133 - Ac3H11_2287 0.77 +0.5 525,133 - Ac3H11_2287 0.77 +0.5 525,133 - Ac3H11_2287 0.77 -0.9 525,136 + Ac3H11_2287 0.77 +0.5 525,136 + Ac3H11_2287 0.77 -0.2 525,136 + Ac3H11_2287 0.77 -0.4 525,136 + Ac3H11_2287 0.77 +1.1 525,136 + Ac3H11_2287 0.77 -0.1 525,136 + Ac3H11_2287 0.77 +0.3 525,137 - Ac3H11_2287 0.78 +0.3 525,137 - Ac3H11_2287 0.78 -0.6 525,137 - Ac3H11_2287 0.78 -0.3 525,137 - Ac3H11_2287 0.78 +0.5 525,172 + Ac3H11_2287 0.80 +1.1 525,172 + Ac3H11_2287 0.80 -1.7 525,172 + Ac3H11_2287 0.80 -0.6 525,172 + Ac3H11_2287 0.80 -0.6 525,173 - Ac3H11_2287 0.80 -0.6 525,173 - Ac3H11_2287 0.80 +1.2 525,173 - Ac3H11_2287 0.80 +0.5 525,173 - Ac3H11_2287 0.80 -0.2 525,173 - Ac3H11_2287 0.80 -0.8 525,289 + Ac3H11_2287 0.88 +0.4 525,289 + Ac3H11_2287 0.88 -0.0 525,289 + Ac3H11_2287 0.88 -1.6 525,289 + Ac3H11_2287 0.88 +0.9 525,290 - Ac3H11_2287 0.89 -0.8 525,290 - Ac3H11_2287 0.89 +0.3 525,290 - Ac3H11_2287 0.89 +0.2 525,290 - Ac3H11_2287 0.89 -0.2 525,320 + +1.2 525,320 + +0.0 525,320 + -0.0 525,320 + -2.4 525,320 + +0.1 525,320 + -0.4 525,321 - +0.2 525,321 - +0.7 525,321 - +0.5 525,321 - +0.6 525,321 - -0.7 525,324 + +0.9 525,324 + -0.1 525,325 - +0.2 525,325 - +0.9 525,325 - +0.7 525,325 - +0.9 525,325 - -0.1 525,325 - +0.4 525,325 - +0.4 525,325 - -0.5 525,356 + -0.4 525,356 + +0.5 525,356 + +2.5 525,356 + +0.1 525,356 + -0.1 525,356 + -0.1 525,357 - +0.6 525,357 - -0.6 525,357 - +0.7 525,357 - +0.4 525,378 + +0.3 525,378 + +0.4 525,378 + +0.4 525,378 + +0.3 525,379 - -0.4 525,379 - -0.0 525,379 - -0.4 525,379 - -0.7 525,382 + +0.0 525,382 + -1.4 525,382 + +0.0 525,382 + -0.2 525,382 + +0.6 525,382 + -0.2 525,382 + +1.0 525,382 + -0.1 525,382 + -0.5 525,382 + +0.9 525,382 + +1.1 525,382 + -0.9 525,382 + -0.6 525,383 - -0.8 525,383 - +0.6 525,383 - +0.6 525,383 - -0.1 525,383 - +0.2 525,383 - -0.2 525,383 - +0.6 525,383 - -1.2 525,383 - -0.5 525,383 - -0.8 525,383 - +1.0 525,399 + -0.6 525,399 + -0.4 525,399 + -0.9 525,400 - +0.3 525,401 + -0.3 525,401 + +0.1 525,401 + +0.8 525,408 - -1.5 525,414 - +0.6 525,434 + +1.1 525,434 + +0.5 525,434 + +0.2 525,434 + -0.4 525,435 - -0.8 525,449 + -1.1 525,449 + -0.6 525,585 + -0.3 525,585 + -1.2 525,585 + -0.5 525,585 + +0.1 525,585 + +0.0 525,585 + -1.6 525,585 + -0.7 525,585 + -0.0 525,586 - -0.4 525,586 - +0.6 525,586 - +0.1 525,586 - -0.5 525,586 - -0.6 525,586 - -0.7 525,599 - +0.1 525,622 + -0.1 525,622 + -0.7 525,622 + -0.2 525,622 + +1.4 525,622 + -0.4 525,622 + -0.7 525,622 + +0.1 525,623 - -0.8 525,623 - +1.6 525,623 - -0.5 525,623 - -0.2 525,679 + +0.4 525,679 + +0.4 525,680 - +0.7 525,680 - -1.0 525,680 - +0.8 525,750 + -0.1 525,786 + -2.6 525,786 + -0.2 525,786 + -1.2 525,786 + -1.1 525,787 - +0.5 525,787 - +0.6 525,787 - -0.2 525,787 - +0.4 525,787 - +0.5 525,917 + Ac3H11_2288 0.21 -0.6 525,918 - Ac3H11_2288 0.21 +1.4 526,049 + Ac3H11_2288 0.34 -0.4 526,050 - Ac3H11_2288 0.34 -0.4 526,050 - Ac3H11_2288 0.34 +0.5 526,117 - Ac3H11_2288 0.41 -2.0 526,377 + Ac3H11_2288 0.66 +0.4 526,377 + Ac3H11_2288 0.66 +0.3 526,416 + Ac3H11_2288 0.70 -0.7 526,416 + Ac3H11_2288 0.70 +0.6 526,416 + Ac3H11_2288 0.70 -0.3 526,416 + Ac3H11_2288 0.70 -0.1 526,416 + Ac3H11_2288 0.70 -0.9 526,417 - Ac3H11_2288 0.70 -0.4 526,417 - Ac3H11_2288 0.70 +0.9 526,417 - Ac3H11_2288 0.70 -1.0 526,417 - Ac3H11_2288 0.70 +0.1 526,417 - Ac3H11_2288 0.70 -1.2 526,417 - Ac3H11_2288 0.70 -0.7 526,417 - Ac3H11_2288 0.70 -0.3 526,420 - Ac3H11_2288 0.70 -0.2 526,420 - Ac3H11_2288 0.70 -0.8 526,476 + Ac3H11_2288 0.76 +0.4 526,476 + Ac3H11_2288 0.76 +1.5 526,476 + Ac3H11_2288 0.76 -0.2 526,476 + Ac3H11_2288 0.76 -0.1 526,476 + Ac3H11_2288 0.76 +0.9 526,477 - Ac3H11_2288 0.76 -0.7 526,477 - Ac3H11_2288 0.76 +0.4 526,477 - Ac3H11_2288 0.76 -1.1 526,477 - Ac3H11_2288 0.76 +0.1 526,647 + -0.3 526,647 + +0.3 526,647 + -0.2 526,647 + +2.3 526,647 + -0.4 526,647 + +0.2 526,648 - +0.9 526,648 - -0.8 526,648 - -0.5 526,648 - -0.8 526,648 - +0.6 526,662 + +0.2 526,813 - Ac3H11_2289 0.19 +0.5 526,891 + Ac3H11_2289 0.32 -0.2 526,891 + Ac3H11_2289 0.32 -0.3 526,891 + Ac3H11_2289 0.32 +0.2 526,891 + Ac3H11_2289 0.32 +0.6 526,892 - Ac3H11_2289 0.32 -0.9 526,892 - Ac3H11_2289 0.32 +0.2 526,892 - Ac3H11_2289 0.32 +0.6 526,892 - Ac3H11_2289 0.32 +0.2 526,924 + Ac3H11_2289 0.38 +0.7 526,925 - Ac3H11_2289 0.38 +0.5 526,925 - Ac3H11_2289 0.38 +0.4 526,925 - Ac3H11_2289 0.38 +0.1 527,024 - Ac3H11_2289 0.56 -0.4 527,024 - Ac3H11_2289 0.56 -1.9 527,032 + Ac3H11_2289 0.57 -0.8 527,032 + Ac3H11_2289 0.57 +1.6 527,033 - Ac3H11_2289 0.57 -1.7 527,035 + Ac3H11_2289 0.58 -0.4 527,035 + Ac3H11_2289 0.58 -1.0 527,035 + Ac3H11_2289 0.58 +1.1 527,036 - Ac3H11_2289 0.58 +0.2 527,036 - Ac3H11_2289 0.58 +0.8 527,051 - Ac3H11_2289 0.60 +1.1 527,081 + Ac3H11_2289 0.66 +0.3 527,082 - Ac3H11_2289 0.66 -1.3 527,082 - Ac3H11_2289 0.66 +0.2 527,082 - Ac3H11_2289 0.66 -0.4 527,082 - Ac3H11_2289 0.66 +0.4 527,154 + Ac3H11_2289 0.79 +0.7 527,154 + Ac3H11_2289 0.79 +0.1 527,155 - Ac3H11_2289 0.79 +1.2 527,163 + Ac3H11_2289 0.80 +0.1 527,164 - Ac3H11_2289 0.80 +0.3 527,164 - Ac3H11_2289 0.80 +0.1 527,215 + Ac3H11_2289 0.89 -0.5 527,276 + -0.0 527,301 + -0.3 527,301 + +0.2 527,301 + -0.2 527,302 - -0.9 527,302 - -1.1 527,332 + -0.3 527,332 + +0.4 527,332 + +0.6 527,333 - +0.4 527,333 - +0.1 527,333 - -0.4 527,383 + -1.4 527,587 + -0.1 527,587 + -0.8 527,587 + +0.1 527,587 + -0.7 527,587 + +0.8 527,602 + +0.2 527,603 - +0.7
Or see this region's nucleotide sequence