Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1096

Experiment: D-Gluconic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1094 and Ac3H11_1095 are separated by 3 nucleotidesAc3H11_1095 and Ac3H11_1096 are separated by 21 nucleotidesAc3H11_1096 and Ac3H11_1097 are separated by 108 nucleotidesAc3H11_1097 and Ac3H11_1098 are separated by 26 nucleotides Ac3H11_1094 - N-carbamoyl-L-amino acid hydrolase (EC 3.5.1.87), at 29,532 to 31,310 _1094 Ac3H11_1095 - Uricase (urate oxidase) (EC 1.7.3.3), at 31,314 to 32,273 _1095 Ac3H11_1096 - Transcriptional regulator, GntR family, at 32,295 to 32,963 _1096 Ac3H11_1097 - Transthyretin family protein, at 33,072 to 33,422 _1097 Ac3H11_1098 - FIG00932412: hypothetical protein, at 33,449 to 33,994 _1098 Position (kb) 32 33Strain fitness (log2 ratio) -2 -1 0 1 2at 31.525 kb on + strand, within Ac3H11_1095at 31.526 kb on - strand, within Ac3H11_1095at 31.526 kb on - strand, within Ac3H11_1095at 31.552 kb on + strand, within Ac3H11_1095at 31.552 kb on + strand, within Ac3H11_1095at 31.552 kb on + strand, within Ac3H11_1095at 31.553 kb on - strand, within Ac3H11_1095at 31.553 kb on - strand, within Ac3H11_1095at 31.579 kb on + strand, within Ac3H11_1095at 31.625 kb on - strand, within Ac3H11_1095at 31.700 kb on - strand, within Ac3H11_1095at 31.702 kb on + strand, within Ac3H11_1095at 31.702 kb on + strand, within Ac3H11_1095at 31.703 kb on - strand, within Ac3H11_1095at 31.715 kb on - strand, within Ac3H11_1095at 31.859 kb on + strand, within Ac3H11_1095at 31.860 kb on - strand, within Ac3H11_1095at 31.860 kb on - strand, within Ac3H11_1095at 31.867 kb on + strand, within Ac3H11_1095at 31.868 kb on - strand, within Ac3H11_1095at 31.868 kb on - strand, within Ac3H11_1095at 32.035 kb on + strand, within Ac3H11_1095at 32.036 kb on - strand, within Ac3H11_1095at 32.036 kb on - strand, within Ac3H11_1095at 32.041 kb on + strand, within Ac3H11_1095at 32.041 kb on + strand, within Ac3H11_1095at 32.041 kb on + strand, within Ac3H11_1095at 32.041 kb on + strand, within Ac3H11_1095at 32.042 kb on - strand, within Ac3H11_1095at 32.046 kb on - strand, within Ac3H11_1095at 32.158 kb on + strand, within Ac3H11_1095at 32.248 kb on + strandat 32.249 kb on - strandat 32.266 kb on + strandat 32.266 kb on + strandat 32.266 kb on + strandat 32.479 kb on + strand, within Ac3H11_1096at 32.479 kb on + strand, within Ac3H11_1096at 32.479 kb on + strand, within Ac3H11_1096at 32.480 kb on - strand, within Ac3H11_1096at 32.480 kb on - strand, within Ac3H11_1096at 32.730 kb on + strand, within Ac3H11_1096at 32.730 kb on + strand, within Ac3H11_1096at 32.731 kb on - strand, within Ac3H11_1096at 32.731 kb on - strand, within Ac3H11_1096at 32.974 kb on + strandat 32.974 kb on + strandat 32.974 kb on + strandat 32.974 kb on + strandat 32.975 kb on - strandat 32.975 kb on - strandat 32.975 kb on - strandat 32.975 kb on - strandat 32.998 kb on - strandat 33.071 kb on + strandat 33.141 kb on + strand, within Ac3H11_1097at 33.141 kb on + strand, within Ac3H11_1097at 33.141 kb on + strand, within Ac3H11_1097at 33.141 kb on + strand, within Ac3H11_1097at 33.141 kb on + strand, within Ac3H11_1097at 33.141 kb on + strand, within Ac3H11_1097at 33.141 kb on + strand, within Ac3H11_1097at 33.142 kb on - strand, within Ac3H11_1097at 33.142 kb on - strand, within Ac3H11_1097at 33.142 kb on - strand, within Ac3H11_1097at 33.249 kb on + strand, within Ac3H11_1097at 33.249 kb on + strand, within Ac3H11_1097at 33.249 kb on + strand, within Ac3H11_1097at 33.249 kb on + strand, within Ac3H11_1097at 33.250 kb on - strand, within Ac3H11_1097at 33.250 kb on - strand, within Ac3H11_1097at 33.250 kb on - strand, within Ac3H11_1097at 33.276 kb on + strand, within Ac3H11_1097at 33.277 kb on - strand, within Ac3H11_1097at 33.367 kb on - strand, within Ac3H11_1097at 33.399 kb on + strandat 33.399 kb on + strandat 33.400 kb on - strandat 33.408 kb on + strandat 33.409 kb on - strandat 33.420 kb on + strandat 33.445 kb on - strandat 33.451 kb on - strandat 33.451 kb on - strandat 33.519 kb on + strand, within Ac3H11_1098at 33.519 kb on + strand, within Ac3H11_1098at 33.520 kb on - strand, within Ac3H11_1098at 33.684 kb on + strand, within Ac3H11_1098at 33.685 kb on - strand, within Ac3H11_1098at 33.685 kb on - strand, within Ac3H11_1098at 33.685 kb on - strand, within Ac3H11_1098at 33.685 kb on - strand, within Ac3H11_1098at 33.685 kb on - strand, within Ac3H11_1098at 33.685 kb on - strand, within Ac3H11_1098at 33.685 kb on - strand, within Ac3H11_1098at 33.685 kb on - strand, within Ac3H11_1098at 33.735 kb on + strand, within Ac3H11_1098at 33.763 kb on - strand, within Ac3H11_1098

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
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31,525 + Ac3H11_1095 0.22 -0.3
31,526 - Ac3H11_1095 0.22 -0.6
31,526 - Ac3H11_1095 0.22 +0.2
31,552 + Ac3H11_1095 0.25 +0.1
31,552 + Ac3H11_1095 0.25 +1.1
31,552 + Ac3H11_1095 0.25 +0.7
31,553 - Ac3H11_1095 0.25 +0.7
31,553 - Ac3H11_1095 0.25 +1.1
31,579 + Ac3H11_1095 0.28 +0.6
31,625 - Ac3H11_1095 0.32 +0.4
31,700 - Ac3H11_1095 0.40 -0.1
31,702 + Ac3H11_1095 0.40 -1.8
31,702 + Ac3H11_1095 0.40 -0.3
31,703 - Ac3H11_1095 0.41 +1.0
31,715 - Ac3H11_1095 0.42 +1.0
31,859 + Ac3H11_1095 0.57 -0.8
31,860 - Ac3H11_1095 0.57 -0.4
31,860 - Ac3H11_1095 0.57 +1.4
31,867 + Ac3H11_1095 0.58 -0.3
31,868 - Ac3H11_1095 0.58 +0.5
31,868 - Ac3H11_1095 0.58 +0.6
32,035 + Ac3H11_1095 0.75 -0.4
32,036 - Ac3H11_1095 0.75 +0.1
32,036 - Ac3H11_1095 0.75 +1.3
32,041 + Ac3H11_1095 0.76 -1.4
32,041 + Ac3H11_1095 0.76 +0.3
32,041 + Ac3H11_1095 0.76 -0.3
32,041 + Ac3H11_1095 0.76 +0.7
32,042 - Ac3H11_1095 0.76 -0.1
32,046 - Ac3H11_1095 0.76 +1.4
32,158 + Ac3H11_1095 0.88 -0.3
32,248 + -0.2
32,249 - +0.7
32,266 + +0.8
32,266 + +1.8
32,266 + +0.5
32,479 + Ac3H11_1096 0.28 -1.8
32,479 + Ac3H11_1096 0.28 +1.8
32,479 + Ac3H11_1096 0.28 -1.1
32,480 - Ac3H11_1096 0.28 -0.8
32,480 - Ac3H11_1096 0.28 -1.8
32,730 + Ac3H11_1096 0.65 -0.8
32,730 + Ac3H11_1096 0.65 -1.5
32,731 - Ac3H11_1096 0.65 -1.8
32,731 - Ac3H11_1096 0.65 -0.1
32,974 + -0.6
32,974 + +0.0
32,974 + +2.3
32,974 + -0.1
32,975 - +1.7
32,975 - -0.3
32,975 - +0.7
32,975 - +1.3
32,998 - +0.8
33,071 + -0.1
33,141 + Ac3H11_1097 0.20 +0.8
33,141 + Ac3H11_1097 0.20 +0.6
33,141 + Ac3H11_1097 0.20 +0.3
33,141 + Ac3H11_1097 0.20 -0.7
33,141 + Ac3H11_1097 0.20 -0.6
33,141 + Ac3H11_1097 0.20 +0.3
33,141 + Ac3H11_1097 0.20 -0.1
33,142 - Ac3H11_1097 0.20 -0.5
33,142 - Ac3H11_1097 0.20 +0.7
33,142 - Ac3H11_1097 0.20 +1.1
33,249 + Ac3H11_1097 0.50 +1.8
33,249 + Ac3H11_1097 0.50 +1.1
33,249 + Ac3H11_1097 0.50 +0.7
33,249 + Ac3H11_1097 0.50 +0.7
33,250 - Ac3H11_1097 0.51 +0.5
33,250 - Ac3H11_1097 0.51 -0.1
33,250 - Ac3H11_1097 0.51 +1.0
33,276 + Ac3H11_1097 0.58 -0.2
33,277 - Ac3H11_1097 0.58 +0.1
33,367 - Ac3H11_1097 0.84 +0.4
33,399 + -0.1
33,399 + -0.5
33,400 - -0.4
33,408 + -0.1
33,409 - -0.7
33,420 + -0.2
33,445 - -0.4
33,451 - -1.0
33,451 - +0.5
33,519 + Ac3H11_1098 0.13 +0.4
33,519 + Ac3H11_1098 0.13 +1.0
33,520 - Ac3H11_1098 0.13 -1.1
33,684 + Ac3H11_1098 0.43 -1.4
33,685 - Ac3H11_1098 0.43 -0.3
33,685 - Ac3H11_1098 0.43 +1.0
33,685 - Ac3H11_1098 0.43 +1.3
33,685 - Ac3H11_1098 0.43 +0.4
33,685 - Ac3H11_1098 0.43 +0.3
33,685 - Ac3H11_1098 0.43 -0.1
33,685 - Ac3H11_1098 0.43 -0.2
33,685 - Ac3H11_1098 0.43 +0.1
33,735 + Ac3H11_1098 0.52 -0.8
33,763 - Ac3H11_1098 0.58 -1.7

Or see this region's nucleotide sequence