Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_27860

Experiment: Nickel (II) chloride 0.625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_27850 and AO353_27855 overlap by 4 nucleotidesAO353_27855 and AO353_27860 are separated by 281 nucleotidesAO353_27860 and AO353_27865 overlap by 4 nucleotides AO353_27850: AO353_27850 - multidrug RND transporter, at 6,073,390 to 6,074,865 _27850 AO353_27855: AO353_27855 - MarR family transcriptional regulator, at 6,074,862 to 6,075,335 _27855 AO353_27860: AO353_27860 - hypothetical protein, at 6,075,617 to 6,079,288 _27860 AO353_27865: AO353_27865 - hypothetical protein, at 6,079,285 to 6,081,012 _27865 Position (kb) 6075 6076 6077 6078 6079 6080Strain fitness (log2 ratio) -2 -1 0 1 2at 6074.792 kb on + strandat 6074.792 kb on + strandat 6074.792 kb on + strandat 6074.793 kb on - strandat 6074.793 kb on - strandat 6074.793 kb on - strandat 6074.793 kb on - strandat 6074.793 kb on - strandat 6074.856 kb on + strandat 6074.997 kb on - strand, within AO353_27855at 6075.040 kb on - strand, within AO353_27855at 6075.048 kb on + strand, within AO353_27855at 6075.348 kb on + strandat 6075.349 kb on - strandat 6075.369 kb on + strandat 6075.369 kb on + strandat 6075.370 kb on - strandat 6075.389 kb on + strandat 6075.412 kb on - strandat 6075.427 kb on + strandat 6075.438 kb on + strandat 6075.438 kb on + strandat 6075.438 kb on + strandat 6075.438 kb on + strandat 6075.439 kb on - strandat 6075.439 kb on - strandat 6075.439 kb on - strandat 6075.439 kb on - strandat 6075.451 kb on + strandat 6075.451 kb on + strandat 6075.451 kb on + strandat 6075.452 kb on - strandat 6075.452 kb on - strandat 6075.618 kb on + strandat 6075.618 kb on + strandat 6075.618 kb on + strandat 6075.618 kb on + strandat 6075.619 kb on - strandat 6075.619 kb on - strandat 6075.619 kb on - strandat 6075.633 kb on + strandat 6075.634 kb on - strandat 6075.634 kb on - strandat 6075.640 kb on + strandat 6075.679 kb on - strandat 6075.679 kb on - strandat 6075.700 kb on - strandat 6075.732 kb on - strandat 6075.960 kb on + strandat 6075.960 kb on + strandat 6075.960 kb on + strandat 6075.961 kb on - strandat 6075.961 kb on - strandat 6075.961 kb on - strandat 6075.961 kb on - strandat 6075.961 kb on - strandat 6076.089 kb on + strand, within AO353_27860at 6076.153 kb on - strand, within AO353_27860at 6076.836 kb on - strand, within AO353_27860at 6076.836 kb on - strand, within AO353_27860at 6076.983 kb on + strand, within AO353_27860at 6077.327 kb on + strand, within AO353_27860at 6077.328 kb on - strand, within AO353_27860at 6077.328 kb on - strand, within AO353_27860at 6077.328 kb on - strand, within AO353_27860at 6077.328 kb on - strand, within AO353_27860at 6077.328 kb on - strand, within AO353_27860at 6077.328 kb on - strand, within AO353_27860at 6077.328 kb on - strand, within AO353_27860at 6077.328 kb on - strand, within AO353_27860at 6078.168 kb on + strand, within AO353_27860at 6078.168 kb on + strand, within AO353_27860at 6078.168 kb on + strand, within AO353_27860at 6078.169 kb on - strand, within AO353_27860at 6078.169 kb on - strand, within AO353_27860at 6078.169 kb on - strand, within AO353_27860at 6078.169 kb on - strand, within AO353_27860at 6078.803 kb on + strand, within AO353_27860at 6078.803 kb on + strand, within AO353_27860at 6078.803 kb on + strand, within AO353_27860at 6078.804 kb on - strand, within AO353_27860at 6078.804 kb on - strand, within AO353_27860at 6078.804 kb on - strand, within AO353_27860at 6078.804 kb on - strand, within AO353_27860at 6079.269 kb on - strandat 6079.269 kb on - strandat 6079.320 kb on + strandat 6079.321 kb on - strandat 6079.435 kb on - strandat 6079.496 kb on + strand, within AO353_27865at 6079.496 kb on + strand, within AO353_27865at 6079.497 kb on - strand, within AO353_27865at 6079.497 kb on - strand, within AO353_27865at 6079.520 kb on + strand, within AO353_27865at 6079.520 kb on + strand, within AO353_27865at 6079.520 kb on + strand, within AO353_27865at 6079.521 kb on - strand, within AO353_27865at 6079.521 kb on - strand, within AO353_27865at 6079.521 kb on - strand, within AO353_27865at 6079.521 kb on - strand, within AO353_27865at 6079.521 kb on - strand, within AO353_27865at 6079.521 kb on - strand, within AO353_27865at 6079.571 kb on + strand, within AO353_27865at 6079.571 kb on + strand, within AO353_27865at 6079.660 kb on + strand, within AO353_27865at 6079.660 kb on + strand, within AO353_27865at 6079.660 kb on + strand, within AO353_27865at 6079.660 kb on + strand, within AO353_27865at 6079.660 kb on + strand, within AO353_27865at 6079.660 kb on + strand, within AO353_27865at 6079.660 kb on + strand, within AO353_27865at 6079.660 kb on + strand, within AO353_27865at 6079.660 kb on + strand, within AO353_27865at 6079.660 kb on + strand, within AO353_27865at 6079.660 kb on + strand, within AO353_27865at 6079.660 kb on + strand, within AO353_27865at 6079.660 kb on + strand, within AO353_27865at 6079.661 kb on - strand, within AO353_27865at 6079.661 kb on - strand, within AO353_27865at 6079.661 kb on - strand, within AO353_27865at 6079.730 kb on + strand, within AO353_27865at 6079.730 kb on + strandat 6079.730 kb on + strand, within AO353_27865at 6079.730 kb on + strand, within AO353_27865at 6079.731 kb on - strand, within AO353_27865at 6079.731 kb on - strand, within AO353_27865at 6079.731 kb on - strand, within AO353_27865at 6079.794 kb on - strand, within AO353_27865at 6079.832 kb on + strand, within AO353_27865at 6079.833 kb on - strand, within AO353_27865at 6079.838 kb on + strand, within AO353_27865at 6079.838 kb on + strand, within AO353_27865at 6079.838 kb on + strand, within AO353_27865at 6079.839 kb on - strand, within AO353_27865at 6079.839 kb on - strand, within AO353_27865at 6079.839 kb on - strand, within AO353_27865at 6079.863 kb on + strand, within AO353_27865at 6079.863 kb on + strand, within AO353_27865at 6079.864 kb on - strand, within AO353_27865at 6079.864 kb on - strand, within AO353_27865at 6079.864 kb on - strand, within AO353_27865at 6079.892 kb on + strand, within AO353_27865at 6080.072 kb on + strand, within AO353_27865at 6080.072 kb on + strand, within AO353_27865at 6080.073 kb on - strand, within AO353_27865at 6080.124 kb on - strand, within AO353_27865at 6080.124 kb on - strand, within AO353_27865at 6080.124 kb on - strand, within AO353_27865at 6080.254 kb on + strand, within AO353_27865

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.625 mM
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6,074,792 + -0.6
6,074,792 + -2.2
6,074,792 + +1.0
6,074,793 - -1.3
6,074,793 - +0.1
6,074,793 - +0.1
6,074,793 - -0.2
6,074,793 - -0.2
6,074,856 + +0.1
6,074,997 - AO353_27855 0.28 -0.8
6,075,040 - AO353_27855 0.38 +0.1
6,075,048 + AO353_27855 0.39 -0.2
6,075,348 + +0.6
6,075,349 - +0.2
6,075,369 + -1.7
6,075,369 + -0.6
6,075,370 - +1.0
6,075,389 + -0.8
6,075,412 - -0.8
6,075,427 + +0.5
6,075,438 + +0.4
6,075,438 + +0.7
6,075,438 + -1.1
6,075,438 + +0.5
6,075,439 - +1.4
6,075,439 - +0.5
6,075,439 - -0.3
6,075,439 - -0.2
6,075,451 + +0.7
6,075,451 + -0.5
6,075,451 + +0.4
6,075,452 - -0.3
6,075,452 - -1.2
6,075,618 + +0.3
6,075,618 + -1.1
6,075,618 + +1.1
6,075,618 + -0.7
6,075,619 - +0.8
6,075,619 - +1.4
6,075,619 - -0.1
6,075,633 + -1.0
6,075,634 - +1.5
6,075,634 - +0.0
6,075,640 + +0.1
6,075,679 - +1.8
6,075,679 - -0.3
6,075,700 - +0.3
6,075,732 - +0.8
6,075,960 + +0.1
6,075,960 + +0.6
6,075,960 + +1.2
6,075,961 - -0.2
6,075,961 - +0.7
6,075,961 - +0.3
6,075,961 - +0.1
6,075,961 - +0.4
6,076,089 + AO353_27860 0.13 +0.0
6,076,153 - AO353_27860 0.15 +1.7
6,076,836 - AO353_27860 0.33 +1.2
6,076,836 - AO353_27860 0.33 -1.1
6,076,983 + AO353_27860 0.37 +0.8
6,077,327 + AO353_27860 0.47 +0.5
6,077,328 - AO353_27860 0.47 -0.7
6,077,328 - AO353_27860 0.47 +0.4
6,077,328 - AO353_27860 0.47 -1.7
6,077,328 - AO353_27860 0.47 +1.4
6,077,328 - AO353_27860 0.47 +0.3
6,077,328 - AO353_27860 0.47 +0.6
6,077,328 - AO353_27860 0.47 +0.7
6,077,328 - AO353_27860 0.47 +2.3
6,078,168 + AO353_27860 0.69 -0.2
6,078,168 + AO353_27860 0.69 -0.0
6,078,168 + AO353_27860 0.69 +0.8
6,078,169 - AO353_27860 0.69 +1.0
6,078,169 - AO353_27860 0.69 +0.3
6,078,169 - AO353_27860 0.69 +1.1
6,078,169 - AO353_27860 0.69 +0.6
6,078,803 + AO353_27860 0.87 -0.5
6,078,803 + AO353_27860 0.87 +0.8
6,078,803 + AO353_27860 0.87 +0.9
6,078,804 - AO353_27860 0.87 +1.0
6,078,804 - AO353_27860 0.87 +0.2
6,078,804 - AO353_27860 0.87 +0.6
6,078,804 - AO353_27860 0.87 +0.5
6,079,269 - -0.8
6,079,269 - +0.9
6,079,320 + +1.6
6,079,321 - +1.0
6,079,435 - +0.8
6,079,496 + AO353_27865 0.12 +0.5
6,079,496 + AO353_27865 0.12 +0.1
6,079,497 - AO353_27865 0.12 -1.3
6,079,497 - AO353_27865 0.12 -0.2
6,079,520 + AO353_27865 0.14 -0.0
6,079,520 + AO353_27865 0.14 +0.7
6,079,520 + AO353_27865 0.14 -0.1
6,079,521 - AO353_27865 0.14 +0.5
6,079,521 - AO353_27865 0.14 -0.0
6,079,521 - AO353_27865 0.14 +0.6
6,079,521 - AO353_27865 0.14 -0.6
6,079,521 - AO353_27865 0.14 +0.1
6,079,521 - AO353_27865 0.14 -0.2
6,079,571 + AO353_27865 0.17 +1.4
6,079,571 + AO353_27865 0.17 +1.5
6,079,660 + AO353_27865 0.22 -1.3
6,079,660 + AO353_27865 0.22 +0.3
6,079,660 + AO353_27865 0.22 +0.5
6,079,660 + AO353_27865 0.22 -0.6
6,079,660 + AO353_27865 0.22 -0.2
6,079,660 + AO353_27865 0.22 -0.5
6,079,660 + AO353_27865 0.22 +0.0
6,079,660 + AO353_27865 0.22 +1.4
6,079,660 + AO353_27865 0.22 -1.3
6,079,660 + AO353_27865 0.22 +0.8
6,079,660 + AO353_27865 0.22 +0.8
6,079,660 + AO353_27865 0.22 +0.6
6,079,660 + AO353_27865 0.22 -0.0
6,079,661 - AO353_27865 0.22 +1.2
6,079,661 - AO353_27865 0.22 +0.3
6,079,661 - AO353_27865 0.22 -0.5
6,079,730 + AO353_27865 0.26 -1.8
6,079,730 + -0.2
6,079,730 + AO353_27865 0.26 +1.7
6,079,730 + AO353_27865 0.26 +0.1
6,079,731 - AO353_27865 0.26 +0.1
6,079,731 - AO353_27865 0.26 -1.3
6,079,731 - AO353_27865 0.26 +0.7
6,079,794 - AO353_27865 0.29 +0.6
6,079,832 + AO353_27865 0.32 +0.5
6,079,833 - AO353_27865 0.32 +0.4
6,079,838 + AO353_27865 0.32 +0.1
6,079,838 + AO353_27865 0.32 +1.3
6,079,838 + AO353_27865 0.32 +0.6
6,079,839 - AO353_27865 0.32 +0.3
6,079,839 - AO353_27865 0.32 -1.0
6,079,839 - AO353_27865 0.32 -0.5
6,079,863 + AO353_27865 0.33 -0.5
6,079,863 + AO353_27865 0.33 +1.1
6,079,864 - AO353_27865 0.34 +0.2
6,079,864 - AO353_27865 0.34 -0.6
6,079,864 - AO353_27865 0.34 +0.6
6,079,892 + AO353_27865 0.35 +0.2
6,080,072 + AO353_27865 0.46 -1.5
6,080,072 + AO353_27865 0.46 -0.7
6,080,073 - AO353_27865 0.46 +0.2
6,080,124 - AO353_27865 0.49 +0.8
6,080,124 - AO353_27865 0.49 +1.1
6,080,124 - AO353_27865 0.49 -0.4
6,080,254 + AO353_27865 0.56 -0.2

Or see this region's nucleotide sequence